Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte2c08
         (676 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic...    27   2.5  
SPBC1289.15 ||SPBC8E4.07c|glycoprotein |Schizosaccharomyces pomb...    27   3.3  
SPAC15E1.05c |||ethanolamine-phosphate cytidylyltransferase |Sch...    26   5.7  
SPAC17D4.04 ||SPAC458.01|tRNA |Schizosaccharomyces pombe|chr 1||...    25   7.6  
SPAC17G8.10c |dma1||mitotic spindle checkpoint protein Dma1|Schi...    25   10.0 
SPAC16A10.07c |taz1|myb1, myb|human TRF ortholog Taz1|Schizosacc...    25   10.0 
SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit Bgs3|Schizo...    25   10.0 

>SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic
            subunit Bgs1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1729

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = +1

Query: 91   NEMLHSKMISNQRGCMAQHCDN*KC 165
            NE +++ MI+ QRG   +HCD  +C
Sbjct: 1098 NEDIYAGMIALQRGGRIKHCDYYQC 1122


>SPBC1289.15 ||SPBC8E4.07c|glycoprotein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1283

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = -1

Query: 172 SDGTFNYRNAVPYTHADY*SFSNAA 98
           SDG   Y + +PYTH    SFSNA+
Sbjct: 48  SDGPSEYTSTLPYTH----SFSNAS 68


>SPAC15E1.05c |||ethanolamine-phosphate cytidylyltransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 365

 Score = 25.8 bits (54), Expect = 5.7
 Identities = 12/57 (21%), Positives = 25/57 (43%), Gaps = 2/57 (3%)
 Frame = -1

Query: 622 HKGSPLTIIIGDNAHTS*RSCLFVLGIYWISQTTQSVVFFYDIQYWIRF--SYLING 458
           H    +T+  G    T    CL      W+ +   S  + +D+++  R+   Y+++G
Sbjct: 43  HSDEEITLNKGPPVMTLEERCLSANTCKWVDEVVPSAPYVFDLEWMRRYGCQYVVHG 99


>SPAC17D4.04 ||SPAC458.01|tRNA |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 654

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +2

Query: 464 NQIRETDPVLYIIEEDDAL 520
           N+  E DP +YI E+D AL
Sbjct: 458 NRFHELDPFVYIKEDDQAL 476


>SPAC17G8.10c |dma1||mitotic spindle checkpoint protein
           Dma1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 267

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 10/15 (66%), Positives = 10/15 (66%)
 Frame = +2

Query: 296 LFVLPCSLRYSYFCI 340
           LFV PCS  Y Y CI
Sbjct: 205 LFVAPCSHSYHYKCI 219


>SPAC16A10.07c |taz1|myb1, myb|human TRF ortholog
           Taz1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 663

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = -3

Query: 542 LLDLTDNTKRRLLL*YTILDPFLVFD 465
           L+DL DNT + L L   +LD  L  D
Sbjct: 233 LIDLLDNTNKHLTLRSIVLDALLSAD 258


>SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit
            Bgs3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1826

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +1

Query: 91   NEMLHSKMISNQRGCMAQHCDN*KC 165
            NE +++ M + QRG   +HCD  +C
Sbjct: 1190 NEDIYAGMTALQRGGRIKHCDYFQC 1214


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,766,449
Number of Sequences: 5004
Number of extensions: 55994
Number of successful extensions: 120
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 120
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 309878492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)