Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte2c08
         (676 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_44424| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.5  
SB_7161| Best HMM Match : Peptidase_M13_N (HMM E-Value=0.00072)        29   4.5  
SB_37061| Best HMM Match : G-gamma (HMM E-Value=4.7)                   28   6.0  
SB_29863| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.0  
SB_49765| Best HMM Match : EGF (HMM E-Value=0)                         28   7.9  
SB_248| Best HMM Match : No HMM Matches (HMM E-Value=.)                28   7.9  

>SB_44424| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1350

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = +2

Query: 551  HEEAGSSARVRIIPDNNCKWTTFVPKSFVFLLKYDSINNYEQ 676
            H       RV+  PDN  ++T F P+      K++S+NN  Q
Sbjct: 891  HRALSVRVRVQATPDNGGRFTAFQPRGGEGADKHESLNNSSQ 932


>SB_7161| Best HMM Match : Peptidase_M13_N (HMM E-Value=0.00072)
          Length = 263

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 14/42 (33%), Positives = 20/42 (47%)
 Frame = +1

Query: 103 HSKMISNQRGCMAQHCDN*KCHHLHSV*TKSNVCQVVFTLFC 228
           H K+   QR C++  C +   + LH+V  KS  C   F   C
Sbjct: 50  HHKVSQQQRVCLSAGCLDAAHYMLHAVDNKSEPCNDFFQYAC 91


>SB_37061| Best HMM Match : G-gamma (HMM E-Value=4.7)
          Length = 209

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 19/46 (41%), Positives = 25/46 (54%)
 Frame = +1

Query: 208 VVFTLFC*LSLGASNAK*IVTGQRILHDNIICASLFSEIFIFLHYI 345
           ++F+ F  LS   S    IV GQ    D IIC SL+  +FI L +I
Sbjct: 143 LIFSSFGPLSCWVSLGD-IVLGQVWGFDMIICLSLYRSVFICLSFI 187


>SB_29863| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 590

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 16/66 (24%), Positives = 30/66 (45%), Gaps = 1/66 (1%)
 Frame = +2

Query: 137 WHSIAIIESAITCIRSEPNQMYVKLFSRSFASLVLV-LVTQSKSSRVRGSCMIILFVLPC 313
           WH I ++   +    S P++ YV+ +     SL L  LVT++  + +    +I   +   
Sbjct: 307 WHGILLVTGDVNVDLSRPSECYVRKYMDVLESLNLTQLVTKATRTTLHSETLIDHMITNL 366

Query: 314 SLRYSY 331
             + SY
Sbjct: 367 PKQVSY 372


>SB_49765| Best HMM Match : EGF (HMM E-Value=0)
          Length = 508

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +2

Query: 377 SISGNTDINPNYFCAKSILFSGLNCNT 457
           S+  NT    NY C+ S  ++G +CNT
Sbjct: 319 SVCNNTQDGKNYTCSCSYGYTGRHCNT 345


>SB_248| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2656

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = +2

Query: 257  SKSSRVRGSCMIILFVLPCSLRYSYFCIIYL 349
            S S R    C I +F L  SLR+ Y C I++
Sbjct: 2012 SVSLRFLYLCAICIFALSVSLRFLYLCAIFV 2042


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,961,108
Number of Sequences: 59808
Number of extensions: 408040
Number of successful extensions: 901
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 779
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 899
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1733301648
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)