Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte2c07
(736 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_30283| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.97
SB_22742| Best HMM Match : ubiquitin (HMM E-Value=0.01) 31 1.3
SB_46149| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.2
SB_145| Best HMM Match : OATP (HMM E-Value=4.2) 30 2.2
SB_26876| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 2.3
SB_12442| Best HMM Match : zf-MYND (HMM E-Value=0.0028) 29 5.2
SB_53466| Best HMM Match : SCP (HMM E-Value=2.4e-27) 29 5.2
SB_45116| Best HMM Match : EGF (HMM E-Value=0) 29 5.2
SB_35887| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.2
SB_55022| Best HMM Match : 7tm_1 (HMM E-Value=0.011) 28 6.8
SB_24117| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.8
SB_58445| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.8
SB_42957| Best HMM Match : TSP_1 (HMM E-Value=6.1e-13) 28 9.0
SB_31994| Best HMM Match : CPSase_L_chain (HMM E-Value=0) 28 9.0
SB_31382| Best HMM Match : RVT_1 (HMM E-Value=2.2e-12) 28 9.0
SB_5892| Best HMM Match : IQ (HMM E-Value=2.1) 28 9.0
SB_4324| Best HMM Match : IQ (HMM E-Value=0.0059) 28 9.0
SB_49733| Best HMM Match : GLTT (HMM E-Value=0.8) 28 9.0
>SB_30283| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1417
Score = 31.1 bits (67), Expect = 0.97
Identities = 22/79 (27%), Positives = 38/79 (48%), Gaps = 1/79 (1%)
Frame = +1
Query: 364 DENFDFPGISDLPSDEGSNHGNIRDYYLKPGYDNHREALKQDVDLDGKISSNEISGLLKQ 543
D ++ FP LP+ E S + Y +P DN ++Q++ K + +G+ +Q
Sbjct: 820 DNDYAFP----LPTIEKSQREPVEGVYSEPYSDNRNAQIRQNLQ-SRKTQPGQKNGVYEQ 874
Query: 544 KDNMQDANQKPL-FNGNLV 597
N +D N +P F G +V
Sbjct: 875 AYNEEDHNVQPADFPGYVV 893
>SB_22742| Best HMM Match : ubiquitin (HMM E-Value=0.01)
Length = 792
Score = 30.7 bits (66), Expect = 1.3
Identities = 20/69 (28%), Positives = 31/69 (44%)
Frame = +1
Query: 391 SDLPSDEGSNHGNIRDYYLKPGYDNHREALKQDVDLDGKISSNEISGLLKQKDNMQDANQ 570
SD P +G GN R + Y N +AL+++ G S ++ LK+K+ AN+
Sbjct: 536 SDGPDSDGLVEGNFRQEMFEK-YGNASDALRREYTRTGDNSRHDTLQTLKEKEGKIAANK 594
Query: 571 KPLFNGNLV 597
LV
Sbjct: 595 SNFCEDELV 603
>SB_46149| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 149
Score = 29.9 bits (64), Expect = 2.2
Identities = 10/22 (45%), Positives = 16/22 (72%)
Frame = -1
Query: 505 SHLNLHLV*EPLCGCHSRVSNS 440
+H + +L+ P+C CH+ VSNS
Sbjct: 7 AHASRNLIESPICDCHAHVSNS 28
>SB_145| Best HMM Match : OATP (HMM E-Value=4.2)
Length = 264
Score = 29.9 bits (64), Expect = 2.2
Identities = 23/79 (29%), Positives = 33/79 (41%), Gaps = 2/79 (2%)
Frame = +1
Query: 373 FDFPGISDLPSDEGSNHGNIRDYYLKPGYDNHREALKQDVDLDGKISSNEISGLLKQKDN 552
FD + D D+G N+G+ D Y Y + + + D D D + E G N
Sbjct: 11 FDDGDVDDGDDDDGDNNGDDDDNYFLLCYASIHDGVDDDDDNDSYLLLKE--GYSNCSCN 68
Query: 553 MQDANQKPLFN--GNLVPG 603
+ LFN G+L PG
Sbjct: 69 HPQVSAPDLFNTTGHLSPG 87
>SB_26876| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 198
Score = 27.5 bits (58), Expect(2) = 2.3
Identities = 15/54 (27%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Frame = +1
Query: 364 DENFDFPG-ISDLPSDEGSNHGNIRDYYLKPGYDNHREALKQDVDLDGKISSNE 522
D+N D G + D +D+ ++ N Y + D+H + K+D D++ ++S+ E
Sbjct: 94 DDNGDDDGDVDDDNNDDDADINNGMVYDIHDNGDDHGDDRKKDHDIEEELSAQE 147
Score = 21.0 bits (42), Expect(2) = 2.3
Identities = 7/13 (53%), Positives = 10/13 (76%)
Frame = +1
Query: 211 DDEDDGDELYSRN 249
DD+DDGD++ N
Sbjct: 84 DDDDDGDDVDDDN 96
>SB_12442| Best HMM Match : zf-MYND (HMM E-Value=0.0028)
Length = 3809
Score = 28.7 bits (61), Expect = 5.2
Identities = 18/60 (30%), Positives = 30/60 (50%)
Frame = +1
Query: 400 PSDEGSNHGNIRDYYLKPGYDNHREALKQDVDLDGKISSNEISGLLKQKDNMQDANQKPL 579
PS +NH + + + P D H E + DVD+D I E L ++DN+ ++P+
Sbjct: 509 PSMLATNHTKGKQF-VDPTSDKHLEDFETDVDVDDLILEEE--NELNERDNLSLYLKRPV 565
>SB_53466| Best HMM Match : SCP (HMM E-Value=2.4e-27)
Length = 5087
Score = 28.7 bits (61), Expect = 5.2
Identities = 20/73 (27%), Positives = 35/73 (47%), Gaps = 3/73 (4%)
Frame = +1
Query: 202 WGSDDEDDGDE-LYSRNEMSAII--DPMDLHRDFTKHMHEMFRSFGSMFGDVQSFFHDEN 372
+GS +E++ DE L EM I DP D + H H+ + + + ++D+
Sbjct: 3180 YGSSEEEEEDEDLLDHREMYVIPEEDPDDPNHH---HHHQQTQQHDD--NEEEVLYYDQG 3234
Query: 373 FDFPGISDLPSDE 411
FD P + D+ +E
Sbjct: 3235 FDNPALEDICEEE 3247
>SB_45116| Best HMM Match : EGF (HMM E-Value=0)
Length = 2023
Score = 28.7 bits (61), Expect = 5.2
Identities = 13/30 (43%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
Frame = -2
Query: 138 VHKGAVRHGCSNLMNSCLCVAG-IWDYCVE 52
VH G CS L + C CVAG ++C E
Sbjct: 133 VHGGTCEFDCSTLTSRCRCVAGYTGEHCEE 162
>SB_35887| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 983
Score = 28.7 bits (61), Expect = 5.2
Identities = 12/37 (32%), Positives = 21/37 (56%)
Frame = +1
Query: 211 DDEDDGDELYSRNEMSAIIDPMDLHRDFTKHMHEMFR 321
DDEDD D+ Y+ N++ +++ P H+H+ R
Sbjct: 295 DDEDDNDDDYTENDIISLM-PYTFTSGLEPHLHQEAR 330
>SB_55022| Best HMM Match : 7tm_1 (HMM E-Value=0.011)
Length = 441
Score = 28.3 bits (60), Expect = 6.8
Identities = 26/115 (22%), Positives = 44/115 (38%), Gaps = 1/115 (0%)
Frame = +1
Query: 367 ENFDFPGISDLPSDEGSNHGNIRDYYLKPGYDNHREALKQD-VDLDGKISSNEISGLLKQ 543
+N F S LP D+G N NI P + N + D + + + I+ L
Sbjct: 234 QNPSFWSASGLPDDDGENPFNI---LFGPSFYNKPLGFQADELQMFENQGAENIAELDVN 290
Query: 544 KDNMQDANQKPLFNGNLVPGRSFCQTIITTSVKKPDGTVETRRIVKNGNEVTEET 708
N +P G ++ + Q+I+ K DG +T ++ + E T
Sbjct: 291 NSNTNHNYNQPSTEGVVMENSAQFQSILDLIEKMTDGRTKTNWTLERNTKKRERT 345
>SB_24117| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1276
Score = 28.3 bits (60), Expect = 6.8
Identities = 15/57 (26%), Positives = 28/57 (49%), Gaps = 4/57 (7%)
Frame = +1
Query: 217 EDDGDELYSRNEMSAIIDPMDLHRDFTKH----MHEMFRSFGSMFGDVQSFFHDENF 375
E D + Y ++ + D++ D TK ++ + G G++QS+F DEN+
Sbjct: 939 EADNSQAYQQSMPDDLTGASDINDDLTKSDKSSQYQPDQQNGDSDGELQSYFPDENY 995
>SB_58445| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 116
Score = 28.3 bits (60), Expect = 6.8
Identities = 15/54 (27%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
Frame = +1
Query: 181 NDFRNPIWGSDDEDDGDELYSRNEMSAIIDPMDLHRDFTKHMHEMFR-SFGSMF 339
ND + GSD+ D+ Y RN + D + RD+ K F S+ +++
Sbjct: 62 NDRQRCETGSDERDETKPYYKRNSDKSCNDLQEYSRDYKKEKEPAFEISYDTLY 115
>SB_42957| Best HMM Match : TSP_1 (HMM E-Value=6.1e-13)
Length = 649
Score = 27.9 bits (59), Expect = 9.0
Identities = 11/20 (55%), Positives = 15/20 (75%)
Frame = +1
Query: 160 IRQEPPRNDFRNPIWGSDDE 219
+R++PPRN R PI+G D E
Sbjct: 31 LRRDPPRNLLRLPIFGKDME 50
>SB_31994| Best HMM Match : CPSase_L_chain (HMM E-Value=0)
Length = 945
Score = 27.9 bits (59), Expect = 9.0
Identities = 13/24 (54%), Positives = 17/24 (70%), Gaps = 1/24 (4%)
Frame = +1
Query: 277 DLHRDFTK-HMHEMFRSFGSMFGD 345
D+H DF K HM ++F + GSM GD
Sbjct: 528 DVHTDFIKQHMADLFPAKGSMPGD 551
>SB_31382| Best HMM Match : RVT_1 (HMM E-Value=2.2e-12)
Length = 1799
Score = 27.9 bits (59), Expect = 9.0
Identities = 15/60 (25%), Positives = 28/60 (46%)
Frame = +1
Query: 514 SNEISGLLKQKDNMQDANQKPLFNGNLVPGRSFCQTIITTSVKKPDGTVETRRIVKNGNE 693
+ EI +++Q+D +K + R + + T S+KK T + I +NGN+
Sbjct: 1167 NKEIKSIMRQRDYFHSKAKKSNLTVDWASHRCY-RNRATNSIKKAKATYNRKLIERNGND 1225
>SB_5892| Best HMM Match : IQ (HMM E-Value=2.1)
Length = 98
Score = 27.9 bits (59), Expect = 9.0
Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Frame = -1
Query: 424 RGWNLRRKASR*FREN-QSFHRGRMTVRHRTCFQTIETFRAYV 299
RGW RR+ ++ +S H M R+ TCF+ +ET + Y+
Sbjct: 19 RGWLCRRRWYNIVQDYIRSPHAESMRKRNYTCFKLLETEKEYL 61
>SB_4324| Best HMM Match : IQ (HMM E-Value=0.0059)
Length = 110
Score = 27.9 bits (59), Expect = 9.0
Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Frame = -1
Query: 424 RGWNLRRKASR*FREN-QSFHRGRMTVRHRTCFQTIETFRAYV 299
RGW RR+ ++ +S H M R+ TCF+ +ET + Y+
Sbjct: 31 RGWLCRRRWYNIVQDYIRSPHAESMRKRNYTCFKLLETEKEYL 73
>SB_49733| Best HMM Match : GLTT (HMM E-Value=0.8)
Length = 149
Score = 27.9 bits (59), Expect = 9.0
Identities = 14/55 (25%), Positives = 26/55 (47%)
Frame = -2
Query: 225 VVFIVGTPDWVSKIVPGRLLPNTKKRT*FVHKGAVRHGCSNLMNSCLCVAGIWDY 61
VV G +W+SK+V + + + FV G V GC ++ + +G ++
Sbjct: 25 VVVTSGCHEWLSKVVTSGFVTSGFVTSGFVTSGFVTSGCHEWLSPVVVTSGCHEW 79
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,891,664
Number of Sequences: 59808
Number of extensions: 538826
Number of successful extensions: 1867
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1714
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1859
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1974037988
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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