Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte2c05
         (675 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC530.12c |pdf1||palmitoyl protein thioesterase-dolichol pyrop...    91   1e-19
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo...    25   10.0 
SPCC1919.10c |myo52||myosin type V|Schizosaccharomyces pombe|chr...    25   10.0 
SPBC1778.02 |rap1||telomere binding protein Rap1|Schizosaccharom...    25   10.0 
SPBC1861.05 |||carbohydrate kinase|Schizosaccharomyces pombe|chr...    25   10.0 
SPAC30D11.01c ||SPAC56F8.01|alpha-glucosidase|Schizosaccharomyce...    25   10.0 

>SPBC530.12c |pdf1||palmitoyl protein thioesterase-dolichol
           pyrophosphate phosphatase fusion 1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 603

 Score = 91.1 bits (216), Expect = 1e-19
 Identities = 51/147 (34%), Positives = 80/147 (54%)
 Frame = +2

Query: 224 GDTCCMSFSLGSFKIFLEKNIPGVYVLSLQIGNNTVEDFENGYFMNPNLQVEYVCEKLAA 403
           GDT   SF+L      ++K   G  V ++++G+N  ED + GY      Q++ VC+ +  
Sbjct: 35  GDTPT-SFTLTEVSQRVQKLTKGA-VYAIRVGDNEFEDIKAGYLGKLEDQLDEVCDLIGN 92

Query: 404 DPKLSNGFNVMGFSQGCQFIRAVVQRCGHKLPQIKNMVSLGGQHQGIYGIPHCGALRHET 583
           +  LSNGF  +G SQG  F+RA+ Q C     +I+++++LG  H GI  IP C       
Sbjct: 93  EDSLSNGFYALGLSQGGLFLRALAQTC--DAAKIRSLITLGSPHSGINTIPGCSPTNLIC 150

Query: 584 CDDVRKLLNYAAYNSWVQNSLVQATYW 664
              V  +L    ++SW+QN +VQA Y+
Sbjct: 151 KAVVHSILGLGIWHSWIQNHVVQAQYY 177


>SPCC18.03 |||shuttle craft like transcriptional
           regulator|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1077

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 14/39 (35%), Positives = 16/39 (41%)
 Frame = -2

Query: 626 CYMQRN*VASSHHHMFRVSRHHNEVCHRCLGADLRETPC 510
           C+   N   S  +H F     H   C RCL A   E PC
Sbjct: 585 CFRPCNKKLSCGNH-FCQHMCHRGPCPRCLEASFEELPC 622


>SPCC1919.10c |myo52||myosin type V|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1516

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = +3

Query: 480  DVVINYHKLKTWCL 521
            ++  NYH LK WCL
Sbjct: 1342 NISYNYHVLKDWCL 1355


>SPBC1778.02 |rap1||telomere binding protein
           Rap1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 693

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 14/30 (46%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
 Frame = -1

Query: 387 HTYSTWRFGFMK-YPFSKSSTVLLPIWRDR 301
           HT+S WR  FM  +PF  S  V   I  DR
Sbjct: 290 HTFSEWRALFMHFFPFINSEGVDPAILSDR 319


>SPBC1861.05 |||carbohydrate kinase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 747

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = -1

Query: 249 LKDMQHVSPQSWWVQLRFFGSNSLLFVTEID 157
           +KD      +SWW +L  FG  S  F  EI+
Sbjct: 587 MKDGNFFENESWWQKLNSFGITS-SFYNEIE 616


>SPAC30D11.01c ||SPAC56F8.01|alpha-glucosidase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 993

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 16/38 (42%), Positives = 19/38 (50%)
 Frame = +1

Query: 4   LLLKSNFTTLYCFTLI*CIVXXXXXXFENPRIHQSSSS 117
           LL K NFTT + FT++          F   R H SSSS
Sbjct: 2   LLFKFNFTTAFLFTIL---------AFAQARSHSSSSS 30


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,969,859
Number of Sequences: 5004
Number of extensions: 65215
Number of successful extensions: 180
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 169
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 178
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 309878492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)