Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte2c05
         (675 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0008 + 84955-85048,85165-85225,85375-85426,85554-85661,856...    61   9e-10
10_08_0939 + 21696941-21697049,21697171-21697255,21698385-216984...    56   2e-08
07_03_1546 + 27602598-27602917,27602995-27603052,27603130-276032...    29   2.6  
08_01_0588 + 5222536-5222656,5222887-5223440                           28   5.9  
04_03_0858 + 20357519-20357573,20358072-20358119,20360675-203609...    28   7.8  
01_06_0276 - 28084746-28085003,28085103-28085357,28085531-280857...    28   7.8  

>03_01_0008 +
           84955-85048,85165-85225,85375-85426,85554-85661,
           85662-85715,86140-86190,86348-86410,87048-87113,
           87190-87228,87493-87615,88251-88343,88437-88661
          Length = 342

 Score = 60.9 bits (141), Expect = 9e-10
 Identities = 34/88 (38%), Positives = 47/88 (53%)
 Frame = +2

Query: 410 KLSNGFNVMGFSQGCQFIRAVVQRCGHKLPQIKNMVSLGGQHQGIYGIPHCGALRHETCD 589
           +LSNG+N++G SQG    RAVV+ C    P +KN +SLGG H G   +P CG+     C 
Sbjct: 111 ELSNGYNIVGLSQGNLIGRAVVEFCDDG-PPVKNFISLGGPHAGTASVPLCGS--GIFCI 167

Query: 590 DVRKLLNYAAYNSWVQNSLVQATYWHDP 673
               L+    Y+ +VQ  L  + Y   P
Sbjct: 168 LADSLIKMEIYSDYVQAHLAPSGYMKIP 195


>10_08_0939 +
           21696941-21697049,21697171-21697255,21698385-21698457,
           21698553-21698609,21698660-21698713,21699196-21699246,
           21699441-21699503,21700453-21700518,21700625-21700663,
           21702190-21702271,21703479-21703536,21703698-21703914,
           21704248-21704697
          Length = 467

 Score = 56.4 bits (130), Expect = 2e-08
 Identities = 33/103 (32%), Positives = 53/103 (51%)
 Frame = +2

Query: 365 NLQVEYVCEKLAADPKLSNGFNVMGFSQGCQFIRAVVQRCGHKLPQIKNMVSLGGQHQGI 544
           NL   Y+C  +    +L  G++++G SQG    RAV++ C    P +KN +S+GG H G 
Sbjct: 100 NLHHFYLCT-VKKMKELRKGYSIVGLSQGNLIGRAVIEYCDGG-PPVKNFISIGGPHAGT 157

Query: 545 YGIPHCGALRHETCDDVRKLLNYAAYNSWVQNSLVQATYWHDP 673
             +P CG+     C  +  L+    Y+++VQ  L  + Y   P
Sbjct: 158 ASVPLCGS--GIVCVLIDALIKLEIYSNYVQAHLAPSGYLKIP 198


>07_03_1546 +
           27602598-27602917,27602995-27603052,27603130-27603252,
           27603896-27603992,27604095-27604131,27604244-27604349,
           27604547-27604604,27604705-27604802,27604911-27605030,
           27605622-27605667,27606336-27606522,27606747-27607263,
           27607361-27607453,27608101-27608286,27608364-27608574,
           27609263-27609387,27609518-27609664,27610114-27610236,
           27610445-27610799,27611076-27611305,27611785-27611877
          Length = 1109

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 17/56 (30%), Positives = 24/56 (42%)
 Frame = -1

Query: 441 KPMTLNPFDSFGSAANFSHTYSTWRFGFMKYPFSKSSTVLLPIWRDRT*TPGMFFS 274
           +P+   P  S GS+A    +Y TW   F     + SS  +  +W  R   P   FS
Sbjct: 159 EPVVFPPLKSVGSSAQAEISYLTWNPKFQHILATASSNGMTVVWDLRNQKPLTSFS 214


>08_01_0588 + 5222536-5222656,5222887-5223440
          Length = 224

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = -1

Query: 465 RIN*HPCEKPMTLNPFDSFGSAANFSHTYST 373
           R+N  PC+ PM +N  D F +AA F    ST
Sbjct: 42  RVNGFPCKNPMEVNS-DDFFNAAKFDMPRST 71


>04_03_0858 +
           20357519-20357573,20358072-20358119,20360675-20360922,
           20361152-20361363,20361480-20361741,20361832-20362143
          Length = 378

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 13/46 (28%), Positives = 26/46 (56%)
 Frame = +2

Query: 389 EKLAADPKLSNGFNVMGFSQGCQFIRAVVQRCGHKLPQIKNMVSLG 526
           E+LA + +L   F +MGFS G + + + ++   H+L  +  +  +G
Sbjct: 154 EELADNLQLGPKFYLMGFSMGGEIMWSCLKHISHRLAGVAILAPVG 199


>01_06_0276 - 28084746-28085003,28085103-28085357,28085531-28085798,
            28085948-28086253,28086369-28086643,28087034-28087252,
            28087486-28089015,28089236-28089397,28089512-28089666,
            28090195-28091064,28091363-28091832,28091917-28091981,
            28092105-28092448,28092531-28092710,28092817-28092920,
            28093053-28093162,28093648-28093744,28094138-28094238,
            28094324-28094476,28094561-28094674,28094795-28094884,
            28094960-28095307
          Length = 2157

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = +2

Query: 365  NLQVEYVCEKLAADPKLSNGFNV 433
            N++ E    KLA +PK+SNG +V
Sbjct: 1606 NMKAEKAAAKLAKEPKISNGVSV 1628


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,567,087
Number of Sequences: 37544
Number of extensions: 399458
Number of successful extensions: 842
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 816
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 840
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1714968940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)