Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte2c03
         (742 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    22   5.3  
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    22   7.0  
AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    22   7.0  
DQ435324-1|ABD92639.1|  152|Apis mellifera OBP3 protein.               21   9.2  
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       21   9.2  
AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.     21   9.2  

>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = -2

Query: 276 FPEYSITIVGHHDASHRVH*HF*HGLR 196
           F   ++TIV HH AS     H+ + +R
Sbjct: 352 FQMKNVTIVDHHTASESFMKHYENEMR 378


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = -2

Query: 444 FSDDDCWMNILCQERFCNRQHFSC 373
           F D  C    LCQ RF  + ++SC
Sbjct: 269 FGDSKC---SLCQRRFEEQGNYSC 289


>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 8/16 (50%), Positives = 9/16 (56%)
 Frame = -1

Query: 250 WSSRCLP*GPLTFLTW 203
           W +R LP GP   L W
Sbjct: 8   WEARYLPAGPPRLLGW 23


>DQ435324-1|ABD92639.1|  152|Apis mellifera OBP3 protein.
          Length = 152

 Score = 21.4 bits (43), Expect = 9.2
 Identities = 6/17 (35%), Positives = 14/17 (82%)
 Frame = +1

Query: 502 VDLNDRDKMKEVIRSCV 552
           +D++ +D ++++IR CV
Sbjct: 86  MDMDLKDSIRKIIRQCV 102


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 21.4 bits (43), Expect = 9.2
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = -1

Query: 601 EQCLRQDLPNDRCTLFQH 548
           EQ +  +LPND  +LF++
Sbjct: 151 EQYIPPELPNDEKSLFEN 168


>AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.
          Length = 388

 Score = 21.4 bits (43), Expect = 9.2
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = +3

Query: 396 RTFLDTEYSSNSH 434
           R FLD +YSS  H
Sbjct: 84  RVFLDEDYSSAEH 96


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 203,203
Number of Sequences: 438
Number of extensions: 4003
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23144850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)