Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte2c02
         (731 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1A4.09 |||pseudouridine synthase|Schizosaccharomyces pombe|c...    27   2.8  
SPAC1565.02c |||GTPase activating protein|Schizosaccharomyces po...    26   6.4  

>SPBC1A4.09 |||pseudouridine synthase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 680

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 11/28 (39%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
 Frame = -3

Query: 300 WRHTRSSR-SVNALPERKRGEASVIETW 220
           W  T  +  S+  LP R   E+S++ETW
Sbjct: 412 WHSTHDAEASLRILPRRMIAESSILETW 439


>SPAC1565.02c |||GTPase activating protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 374

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 10/33 (30%), Positives = 19/33 (57%)
 Frame = +2

Query: 32  PFLHIKIKPLIGYYIRDAFICLFPTSNSVTIAF 130
           P  H+K+ P++  + R+    +FP++ S T  F
Sbjct: 136 PLSHLKLPPIVYEFDRNVEPAIFPSNPSATSNF 168


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,945,895
Number of Sequences: 5004
Number of extensions: 57099
Number of successful extensions: 117
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 117
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 345237368
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)