Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte2c02
         (731 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_04_0136 - 18331270-18331431,18331528-18332547,18335048-18335227     31   1.2  
10_06_0037 + 9932967-9933112,9934815-9934822,9935213-9935349,993...    28   6.6  
01_07_0192 - 41888998-41890632                                         28   6.6  
06_01_0800 - 5988425-5988580,5988842-5988951,5990275-5990392,599...    28   8.8  

>05_04_0136 - 18331270-18331431,18331528-18332547,18335048-18335227
          Length = 453

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 11/36 (30%), Positives = 21/36 (58%)
 Frame = +3

Query: 231 LRMPLPFSVPGVHSPIDSIACGASWDKILLLTPTTL 338
           L +PL F+  G+H+ ID++   A+W  + L+    +
Sbjct: 319 LMLPLYFATSGLHTDIDNVRGAAAWGMVALVVAVAI 354


>10_06_0037 +
           9932967-9933112,9934815-9934822,9935213-9935349,
           9935761-9936438
          Length = 322

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = -1

Query: 371 GEGKSSFFSPRQCRWRQ 321
           G+ K+ F SPRQ RWR+
Sbjct: 19  GKEKNGFISPRQSRWRE 35


>01_07_0192 - 41888998-41890632
          Length = 544

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 19/60 (31%), Positives = 31/60 (51%), Gaps = 3/60 (5%)
 Frame = -3

Query: 375 GG*RKELFF--FSAPMSLASTAIFYPNWRHTRSSRSVNALPERKRGEA-SVIETWVIAFL 205
           G  R E FF  F A + ++   +F+P     R+ R  N   ER+  +A  VI+ +V+A +
Sbjct: 207 GDRRHEAFFAAFDAAVEISVARVFHPTTLVWRAMRLANVGSERRMRDAIRVIDEYVMAIV 266


>06_01_0800 -
           5988425-5988580,5988842-5988951,5990275-5990392,
           5990649-5990723,5990856-5991030,5991160-5991425
          Length = 299

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 18/45 (40%), Positives = 22/45 (48%)
 Frame = +1

Query: 157 DITGILFK*QEKEPIAKKRNNPSFNYGCLSPFPFRECIHRSTRSR 291
           D+TGI F+ Q          N  F+Y  LSPF    C + S RSR
Sbjct: 34  DMTGICFRDQLWLNTYPLDRNLVFDYFALSPFYDLTCNNESLRSR 78


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,242,729
Number of Sequences: 37544
Number of extensions: 376319
Number of successful extensions: 758
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 740
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 758
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1921741964
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)