Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte2c02
         (731 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_9791| Best HMM Match : Herpes_teg_N (HMM E-Value=1.9)               33   0.32 
SB_26930| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.7  
SB_24575| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.7  
SB_41146| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.7  
SB_26152| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.7  
SB_13786| Best HMM Match : Borrelia_orfD (HMM E-Value=3.3)             30   1.7  
SB_19938| Best HMM Match : TolA (HMM E-Value=0.22)                     30   2.2  
SB_37289| Best HMM Match : Herpes_teg_N (HMM E-Value=0.07)             29   2.9  
SB_52256| Best HMM Match : Man-6-P_recep (HMM E-Value=2.4e-06)         29   5.1  
SB_18635| Best HMM Match : 7tm_1 (HMM E-Value=8.54792e-44)             28   6.8  

>SB_9791| Best HMM Match : Herpes_teg_N (HMM E-Value=1.9)
          Length = 237

 Score = 32.7 bits (71), Expect = 0.32
 Identities = 15/32 (46%), Positives = 18/32 (56%)
 Frame = -1

Query: 266 HSRNGKGERHP*LKLGLLRFLAIGSFSCYLNK 171
           H+RN  G RHP  K  LL F  I S  CY+ +
Sbjct: 172 HNRNQNGFRHPNGKAVLLEFKTIRSVGCYIRR 203


>SB_26930| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1533

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = -1

Query: 266  HSRNGKGERHP*LKLGLLRFLAIGSFSCYLNK 171
            H+R+  G RHP  K  LL F  + S +CY+ +
Sbjct: 1112 HNRDQNGFRHPNGKAVLLEFKTLRSVACYIRR 1143


>SB_24575| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1741

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = -1

Query: 266  HSRNGKGERHP*LKLGLLRFLAIGSFSCYLNK 171
            H+R+  G RHP  K  LL F  + S +CY+ +
Sbjct: 1676 HNRDQNGFRHPNGKAVLLEFKTLRSVACYIRR 1707


>SB_41146| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1128

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = -1

Query: 266  HSRNGKGERHP*LKLGLLRFLAIGSFSCYLNK 171
            H+R+  G RHP  K  LL F  + S +CY+ +
Sbjct: 1063 HNRDQNGFRHPDGKAVLLEFKTLRSVACYIRR 1094


>SB_26152| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1380

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = -1

Query: 266  HSRNGKGERHP*LKLGLLRFLAIGSFSCYLNK 171
            H+R+  G RHP  K  LL F  + S +CY+ +
Sbjct: 1315 HNRDQNGFRHPDGKAVLLEFKTLRSVACYIRR 1346


>SB_13786| Best HMM Match : Borrelia_orfD (HMM E-Value=3.3)
          Length = 258

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = -1

Query: 266 HSRNGKGERHP*LKLGLLRFLAIGSFSCYLNK 171
           H+R+  G RHP  K  LL F  + S +CY+ +
Sbjct: 193 HNRDQNGFRHPNGKAVLLEFKTLRSVACYIRR 224


>SB_19938| Best HMM Match : TolA (HMM E-Value=0.22)
          Length = 2279

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = -1

Query: 266  HSRNGKGERHP*LKLGLLRFLAIGSFSCYLNK 171
            H+R+  G RHP  K  LL F  + S  CY+ +
Sbjct: 1959 HNRDQNGFRHPDGKAVLLEFKTLRSVGCYIRR 1990


>SB_37289| Best HMM Match : Herpes_teg_N (HMM E-Value=0.07)
          Length = 1248

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = -1

Query: 266  HSRNGKGERHP*LKLGLLRFLAIGSFSCYL 177
            H+R+  G RHP  K  LL F  + S +CY+
Sbjct: 1183 HNRDQNGFRHPDGKAVLLEFKTLRSVTCYI 1212


>SB_52256| Best HMM Match : Man-6-P_recep (HMM E-Value=2.4e-06)
          Length = 237

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 15/38 (39%), Positives = 19/38 (50%)
 Frame = +3

Query: 432 KNDNPTPSHSFARGI*ISFHLTILGFAHRF*NRHVKGT 545
           +NDN   S     G+ +S+H  I G  H    RH KGT
Sbjct: 190 ENDNKLYSSCAPSGLDLSYHAIIFGRFHCRPGRHQKGT 227


>SB_18635| Best HMM Match : 7tm_1 (HMM E-Value=8.54792e-44)
          Length = 350

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 11/46 (23%), Positives = 24/46 (52%)
 Frame = +2

Query: 584 NSSVRREERSPGNCFCNMMHSLKSKRFNHHASPLSNTEVLTHDKCI 721
           NS++RR+ +S  NC+  +  +  S   N    P++   ++  + C+
Sbjct: 305 NSTIRRQSQSRRNCYSVISSNSPSPAPNRRLLPINEEALIEKETCL 350


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,924,677
Number of Sequences: 59808
Number of extensions: 427835
Number of successful extensions: 780
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 742
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 778
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1962001171
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)