Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte2b23
         (678 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_04_0443 - 21283680-21283940,21284044-21284118,21284620-212846...    29   3.4  
01_06_1467 + 37570289-37570771,37571818-37571892,37572006-37572266     29   3.4  
05_04_0033 - 17369134-17369321,17369522-17370355,17370429-17373042     28   7.9  
02_02_0520 + 11152718-11153600,11153736-11153917,11154160-111542...    28   7.9  

>05_04_0443 -
           21283680-21283940,21284044-21284118,21284620-21284649,
           21286744-21287247
          Length = 289

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 11/19 (57%), Positives = 16/19 (84%)
 Frame = -1

Query: 345 FYFLVFLGLIGGWSSSVEQ 289
           F+F+VFLGL   WS+SV++
Sbjct: 150 FFFIVFLGLTLSWSASVKK 168


>01_06_1467 + 37570289-37570771,37571818-37571892,37572006-37572266
          Length = 272

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 11/19 (57%), Positives = 16/19 (84%)
 Frame = -1

Query: 345 FYFLVFLGLIGGWSSSVEQ 289
           F+F+VFLGL   WS+SV++
Sbjct: 143 FFFIVFLGLTLSWSASVKK 161


>05_04_0033 - 17369134-17369321,17369522-17370355,17370429-17373042
          Length = 1211

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 21/61 (34%), Positives = 30/61 (49%), Gaps = 9/61 (14%)
 Frame = -1

Query: 204  NSCKAFTLFW-PDL--------ISLVSVCNIVSFMLTTNCISDIMVRSLCVKQTNLQLNN 52
            +S K FTL+  PDL        + L SVC +    LT  C+S   V+ L    ++  LNN
Sbjct: 1085 SSLKEFTLYHLPDLCVLEGLSSLQLHSVCLVDIPKLTAECVSKFRVQDLLHVSSSAVLNN 1144

Query: 51   V 49
            +
Sbjct: 1145 I 1145


>02_02_0520 +
           11152718-11153600,11153736-11153917,11154160-11154249,
           11154343-11154627,11154776-11154994,11155112-11155339
          Length = 628

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 18/60 (30%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
 Frame = +2

Query: 65  KFVCFTHRERTMI-SEMQLVVSINDTILHTLTNEIKSGQNNVNALQEFQKDVNLLLTKMI 241
           KFV  T  ER  + SEM+     ND+I      + KS +N +  +++ +K+  + L K++
Sbjct: 337 KFVAQTDIERRKLESEMKKNSEQNDSIHMARIEQQKSDKNVLKLVEKHKKEKEIALNKIL 396


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,943,168
Number of Sequences: 37544
Number of extensions: 229374
Number of successful extensions: 443
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 434
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 443
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1726796312
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)