Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte2b22
         (734 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC63.10c |||dolichol kinase |Schizosaccharomyces pombe|chr 3||...    27   2.1  
SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyc...    27   2.1  
SPBC16E9.16c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    25   8.5  

>SPCC63.10c |||dolichol kinase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 465

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 11/35 (31%), Positives = 18/35 (51%)
 Frame = +1

Query: 34  IFVFNIDIFLIISLKWKWFGGGTVLFWPCCFCCRC 138
           +F F+I +FL++ L   +    +V FW   F   C
Sbjct: 403 VFAFSISVFLVLHLTQAFHVCPSVTFWKTLFMSLC 437


>SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1190

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 14/46 (30%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
 Frame = +1

Query: 583 SFRNRYSQRTKPKRSCRQLYCSLSRSCYFYRRLSKCH--LLNDLLK 714
           S R RY +  KP      +YC    + + YR   +CH   ++D++K
Sbjct: 809 SLRARYRKFKKPLIDFNDIYCVDPETGHSYRSREECHYEFVDDVVK 854


>SPBC16E9.16c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 642

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 3/50 (6%)
 Frame = -1

Query: 503 TSTYNGFVVIVAASGRNRREALILCTVTGDHVNSMLGG---I*TRSNGRI 363
           TSTY G   + + S R+     +  T T ++V+++ G    I T +N RI
Sbjct: 49  TSTYEGAQPLSSQSSRSSNYTNVKITATQNNVDALTGAPIRIVTTTNARI 98


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,716,215
Number of Sequences: 5004
Number of extensions: 50127
Number of successful extensions: 160
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 156
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 160
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 347244562
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)