Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte2b22
(734 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0451 - 3404749-3405171,3405444-3405599,3405711-3406583,340... 31 0.95
12_02_0651 + 21522089-21522128,21522472-21522593,21523386-215235... 29 2.9
01_05_0433 - 22094784-22095659 29 3.8
01_01_0484 - 3558941-3559303,3559439-3559560,3560596-3560743,356... 29 3.8
06_03_1182 + 28233916-28234240,28235279-28235305,28236348-28236448 29 5.1
10_04_0002 - 7372425-7372601,7372697-7372780,7372859-7373010,737... 28 6.7
09_04_0277 - 16322312-16322629 28 6.7
07_01_0129 - 959600-959625,960100-961428,961585-961657,962185-96... 28 6.7
02_05_1177 + 34739359-34740304,34740401-34740568,34740672-34741852 28 6.7
07_01_0954 - 8016804-8016905,8017409-8017469,8017543-8017649,801... 28 8.8
07_01_0010 + 72162-74303,74470-74545,75971-76043,76496-76540,779... 28 8.8
02_01_0369 + 2649178-2655291,2655773-2656601,2656737-2657425,265... 28 8.8
>07_01_0451 -
3404749-3405171,3405444-3405599,3405711-3406583,
3406847-3406942
Length = 515
Score = 31.1 bits (67), Expect = 0.95
Identities = 10/23 (43%), Positives = 17/23 (73%)
Frame = -1
Query: 134 RQQKQHGQNKTVPPPNHFHFREI 66
R +K HG+ +T+PP H+H +E+
Sbjct: 385 RYRKAHGKLRTLPPCPHYHLKEV 407
>12_02_0651 +
21522089-21522128,21522472-21522593,21523386-21523544,
21523653-21523730,21523821-21523865,21524121-21524187,
21524261-21524322,21524407-21524546,21524752-21524878,
21524957-21525071,21525210-21525298,21525533-21525616,
21525857-21526219,21526300-21526689,21526835-21526894,
21527530-21527553
Length = 654
Score = 29.5 bits (63), Expect = 2.9
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = +1
Query: 442 ASRLLRPEAATITTKPLYVDVNLGASVHRTLH 537
AS + P + ++PL + NLGAS+HR H
Sbjct: 433 ASTVEHPPRRELLSEPLLQNPNLGASLHRQFH 464
>01_05_0433 - 22094784-22095659
Length = 291
Score = 29.1 bits (62), Expect = 3.8
Identities = 16/37 (43%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Frame = +3
Query: 255 PGRRAPPVLAAPKTI-APLTRTTSRRLLECYVCAYKT 362
PGR PP + PK + AP R SRR C C + T
Sbjct: 48 PGRVPPPPMYRPKPMQAPARRRRSRRGWCCACCLWMT 84
>01_01_0484 -
3558941-3559303,3559439-3559560,3560596-3560743,
3560853-3561491,3562154-3562450,3562553-3563407,
3564363-3564545,3565041-3565118,3565762-3565974,
3566075-3566238,3566357-3566445,3566761-3566891,
3566980-3567148,3567255-3567327,3567525-3567606,
3567677-3567808,3568743-3568818,3568965-3569065,
3569446-3569636,3569738-3569912,3570604-3570854,
3571327-3571603,3572184-3572267,3572496-3573206
Length = 1867
Score = 29.1 bits (62), Expect = 3.8
Identities = 14/27 (51%), Positives = 17/27 (62%)
Frame = +3
Query: 273 PVLAAPKTIAPLTRTTSRRLLECYVCA 353
P LA P IAPL+ + S RL C+V A
Sbjct: 95 PELALPLLIAPLSASPSPRLASCFVKA 121
>06_03_1182 + 28233916-28234240,28235279-28235305,28236348-28236448
Length = 150
Score = 28.7 bits (61), Expect = 5.1
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = +3
Query: 300 APLTRTTSRRLLECYVCAYKTDTPIRSCLDPAKHRV 407
+P T + + +L+ C TDTP +C DP K V
Sbjct: 29 SPSTPSCASKLVPCAQYMNGTDTPPAACCDPLKEAV 64
>10_04_0002 -
7372425-7372601,7372697-7372780,7372859-7373010,
7373229-7373324,7373406-7373554,7373723-7373788,
7373925-7373994,7374106-7374236,7376464-7376471,
7377946-7378002
Length = 329
Score = 28.3 bits (60), Expect = 6.7
Identities = 9/39 (23%), Positives = 19/39 (48%)
Frame = +3
Query: 513 CVGSPDTTCCELNRCNNQAFAMPIISKQILTANKTEKIM 629
C+ D+ CC C N A+P + K+ + ++++
Sbjct: 104 CLVIEDSLCCSWKSCRNACIAVPSVPKRTAEFSSADEVI 142
>09_04_0277 - 16322312-16322629
Length = 105
Score = 28.3 bits (60), Expect = 6.7
Identities = 19/50 (38%), Positives = 26/50 (52%), Gaps = 4/50 (8%)
Frame = +1
Query: 487 PLYVDVNL-GASVHRTLHAVS*IAATTRPLR---CRSFRNRYSQRTKPKR 624
P+ ++NL GA HR++H +S LR CR R +RT PKR
Sbjct: 42 PIIGNLNLIGALPHRSIHELSKRYGPLIQLRFGSCREEERRRQRRTTPKR 91
>07_01_0129 -
959600-959625,960100-961428,961585-961657,962185-962226
Length = 489
Score = 28.3 bits (60), Expect = 6.7
Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Frame = +1
Query: 622 RSCRQLYCS--LSRSCYFYRRLSKCHLLNDLLK 714
R CRQ Y L +C F R+L + H++N LLK
Sbjct: 182 RLCRQPYSMHLLLDNCLFSRQLEREHIMNFLLK 214
>02_05_1177 + 34739359-34740304,34740401-34740568,34740672-34741852
Length = 764
Score = 28.3 bits (60), Expect = 6.7
Identities = 17/57 (29%), Positives = 24/57 (42%), Gaps = 2/57 (3%)
Frame = +3
Query: 393 AKHRVHVITCHSTEDKCFTSVTSRGSDNNYEAVIRGCKSGCVGSP--DTTCCELNRC 557
AK C ST +CF ++ +G N C G G+P D C ++N C
Sbjct: 271 AKRNATDYACRSTNSECFDTIDGQGYRCN-------CCQGYEGNPYLDGGCTDINEC 320
>07_01_0954 -
8016804-8016905,8017409-8017469,8017543-8017649,
8018278-8018382,8018460-8018546,8018631-8018711,
8018872-8018944,8019288-8019400,8019695-8019788,
8020060-8020115,8020212-8020295,8020384-8020476,
8020592-8020765,8020956-8021099,8021225-8021380
Length = 509
Score = 27.9 bits (59), Expect = 8.8
Identities = 11/39 (28%), Positives = 23/39 (58%)
Frame = +3
Query: 303 PLTRTTSRRLLECYVCAYKTDTPIRSCLDPAKHRVHVIT 419
PLTRT ++ + C D P+ +C++ ++++V+T
Sbjct: 91 PLTRTRAKPAVPVGGCYRLIDIPMSNCINSKINKIYVLT 129
>07_01_0010 + 72162-74303,74470-74545,75971-76043,76496-76540,
77916-78116,78463-78541,78637-78678,78788-78847,
79087-80484,80777-80902,81037-81300
Length = 1501
Score = 27.9 bits (59), Expect = 8.8
Identities = 16/50 (32%), Positives = 24/50 (48%)
Frame = +2
Query: 557 QQPGLCDADHFETDTHSEQNRKDHAANYTVLCHGPVTSTDGCQSVICLTI 706
+ PG + DHF T E+ ++H NYT + VTS S + T+
Sbjct: 1067 EDPGYGNIDHFIL-TEMERENQEHINNYTSVNDYAVTSNPSFHSELHKTL 1115
>02_01_0369 + 2649178-2655291,2655773-2656601,2656737-2657425,
2657523-2657649,2657731-2657812,2658172-2658196
Length = 2621
Score = 27.9 bits (59), Expect = 8.8
Identities = 9/17 (52%), Positives = 15/17 (88%)
Frame = -1
Query: 92 PNHFHFREIIKKISILN 42
P +FHFR+I++KI +L+
Sbjct: 1380 PENFHFRDIVEKIELLS 1396
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,351,736
Number of Sequences: 37544
Number of extensions: 346565
Number of successful extensions: 1174
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1173
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1933531792
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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