Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte2b22
(734 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_44250| Best HMM Match : Toxin_1 (HMM E-Value=0.039) 31 0.97
SB_20265| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.97
SB_5842| Best HMM Match : WD40 (HMM E-Value=6.7e-21) 29 3.0
SB_11483| Best HMM Match : WSC (HMM E-Value=0.063) 29 3.9
SB_54348| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.2
SB_50601| Best HMM Match : Peptidase_M10 (HMM E-Value=0) 29 5.2
SB_18135| Best HMM Match : Cytochrom_B561 (HMM E-Value=0.5) 29 5.2
SB_56906| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.2
SB_7507| Best HMM Match : LIM (HMM E-Value=1.9) 28 6.8
SB_37337| Best HMM Match : PGI (HMM E-Value=0) 28 9.0
SB_32428| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.0
SB_19154| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.0
>SB_44250| Best HMM Match : Toxin_1 (HMM E-Value=0.039)
Length = 80
Score = 31.1 bits (67), Expect = 0.97
Identities = 19/69 (27%), Positives = 29/69 (42%), Gaps = 6/69 (8%)
Frame = +3
Query: 420 CHSTEDKCF------TSVTSRGSDNNYEAVIRGCKSGCVGSPDTTCCELNRCNNQAFAMP 581
C ED CF ++ S G ++ +A I+ C + CCE + CN A P
Sbjct: 5 CKKDEDVCFKHRTGDSTTKSCGKKSDCDARIKSCTDNN-NYCEAACCETDECNAGAVNQP 63
Query: 582 IISKQILTA 608
++ L A
Sbjct: 64 VVLVTALAA 72
>SB_20265| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 730
Score = 31.1 bits (67), Expect = 0.97
Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 3/46 (6%)
Frame = +3
Query: 384 LDPAKHRVHVITCHSTEDKCFTSV---TSRGSDNNYEAVIRGCKSG 512
L P RVH+ + E C +S +RG DN +A GC+SG
Sbjct: 507 LGPRDGRVHMKSLSREEGSCLSSSGTRDARGQDNTPKASAHGCESG 552
>SB_5842| Best HMM Match : WD40 (HMM E-Value=6.7e-21)
Length = 759
Score = 29.5 bits (63), Expect = 3.0
Identities = 17/50 (34%), Positives = 23/50 (46%)
Frame = +3
Query: 414 ITCHSTEDKCFTSVTSRGSDNNYEAVIRGCKSGCVGSPDTTCCELNRCNN 563
I C S E+ C TS+ R + IR C+SG + TC RC +
Sbjct: 473 IRCRSGEETCVTSIRGRSGEGTCVTSIR-CRSG-----EETCVTSIRCRS 516
>SB_11483| Best HMM Match : WSC (HMM E-Value=0.063)
Length = 86
Score = 29.1 bits (62), Expect = 3.9
Identities = 13/47 (27%), Positives = 22/47 (46%)
Frame = +3
Query: 372 IRSCLDPAKHRVHVITCHSTEDKCFTSVTSRGSDNNYEAVIRGCKSG 512
++ C + AK R +++ + CFTS + + N Y GC G
Sbjct: 27 LQECFEEAKRRGNIVFAMQARNYCFTSPDAHHTYNKY-GPAPGCSGG 72
>SB_54348| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 375
Score = 28.7 bits (61), Expect = 5.2
Identities = 15/43 (34%), Positives = 27/43 (62%), Gaps = 1/43 (2%)
Frame = -1
Query: 143 SSHRQQKQHGQNKTVPPPNHFHFREIIKKISI-LNTKIHYIFH 18
S+ R+Q Q Q+ T PN+ +RE + +I+ +NT +H I++
Sbjct: 13 STRRRQSQEQQDYTSGYPNNEEYREDLGQITHGINTLVHDIYN 55
>SB_50601| Best HMM Match : Peptidase_M10 (HMM E-Value=0)
Length = 515
Score = 28.7 bits (61), Expect = 5.2
Identities = 19/72 (26%), Positives = 32/72 (44%), Gaps = 1/72 (1%)
Frame = +3
Query: 345 VCAYKTDTPIRSCLDPAKHRVHVITCHSTEDKCFTSVTSRGSDNNYEAVIRGC-KSGCVG 521
+ + T TP+ S + H TC +T D CFT+ T+ + + + +G
Sbjct: 420 ILSQDTQTPLNSFYNTGYPDTHNTTC-TTGDFCFTTCTTGILSQDTQTPLNHFYNTGYPD 478
Query: 522 SPDTTCCELNRC 557
+ +TTC N C
Sbjct: 479 TENTTCTTGNFC 490
>SB_18135| Best HMM Match : Cytochrom_B561 (HMM E-Value=0.5)
Length = 1595
Score = 28.7 bits (61), Expect = 5.2
Identities = 26/87 (29%), Positives = 43/87 (49%), Gaps = 3/87 (3%)
Frame = +1
Query: 451 LLRPEAATITTKPL---YVDVNLGASVHRTLHAVS*IAATTRPLRCRSFRNRYSQRTKPK 621
+ R A T++T L Y+ +N S+ RT+ AV+ AA L R + Y P+
Sbjct: 884 IYRSIAVTLSTAQLLSRYLPLNCCHSIFRTI-AVTLSAAQ---LLSRYLPHDYCATHLPQ 939
Query: 622 RSCRQLYCSLSRSCYFYRRLSKCHLLN 702
C +YC+++ + + LS+ LLN
Sbjct: 940 NCCLAIYCTIAVTLSTAQLLSRYLLLN 966
>SB_56906| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 311
Score = 28.7 bits (61), Expect = 5.2
Identities = 12/34 (35%), Positives = 15/34 (44%)
Frame = +1
Query: 562 TRPLRCRSFRNRYSQRTKPKRSCRQLYCSLSRSC 663
T P R R N + KP +C YCS + C
Sbjct: 100 THPRRLRPEVNAFYALVKPPTNCSNEYCSTGKKC 133
>SB_7507| Best HMM Match : LIM (HMM E-Value=1.9)
Length = 200
Score = 28.3 bits (60), Expect = 6.8
Identities = 13/27 (48%), Positives = 13/27 (48%)
Frame = +1
Query: 58 FLIISLKWKWFGGGTVLFWPCCFCCRC 138
FL ISL W G T CFCC C
Sbjct: 12 FLCISLGWISRGKDTSAMGRNCFCCAC 38
>SB_37337| Best HMM Match : PGI (HMM E-Value=0)
Length = 391
Score = 27.9 bits (59), Expect = 9.0
Identities = 15/44 (34%), Positives = 22/44 (50%)
Frame = -1
Query: 377 SNGRIGFVSADVAFQKPSAGSSREWSNSLRSGEDRRCSSTRSLN 246
+ G+ G +A QK AG + S+ R+G R C TR L+
Sbjct: 332 AEGKTGEKLDKIAPQKRGAGQTARESHPTRAGVTRPCDVTRQLH 375
>SB_32428| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1128
Score = 27.9 bits (59), Expect = 9.0
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = +3
Query: 507 SGCVGSPDTTCCELNRCNNQAFAMP 581
SG + +CC N CNN+ A+P
Sbjct: 1040 SGLLTKCSVSCCHGNGCNNEGLAIP 1064
>SB_19154| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 569
Score = 27.9 bits (59), Expect = 9.0
Identities = 16/57 (28%), Positives = 25/57 (43%), Gaps = 2/57 (3%)
Frame = +3
Query: 447 TSVTSRGSDNNYEAVIRGCKSGCVGSPDTTCCELNRCNNQ--AFAMPIISKQILTAN 611
T+ SD++ + I+G + + S CC CN +FA P + Q L N
Sbjct: 101 TATAQTFSDDSTQHTIKGIFNDILKSAVNLCCAQRNCNQTQVSFAPPATTLQTLNIN 157
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,431,772
Number of Sequences: 59808
Number of extensions: 436240
Number of successful extensions: 4935
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 4778
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4918
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1974037988
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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