Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte2b22
         (734 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U97196-2|AAB52461.2|  268|Caenorhabditis elegans Hypothetical pr...    30   2.0  
Z69637-7|CAO78728.1|  433|Caenorhabditis elegans Hypothetical pr...    29   2.6  
Z69637-1|CAA93467.1|  601|Caenorhabditis elegans Hypothetical pr...    29   2.6  
U58750-6|AAB00646.1| 2049|Caenorhabditis elegans Rod (drosophila...    29   4.5  
Z37983-7|CAA86058.1| 1106|Caenorhabditis elegans Hypothetical pr...    28   7.9  
U70870-1|AAB51198.1| 1404|Caenorhabditis elegans CELF35-1 protein.     28   7.9  
U40934-5|AAA81683.2| 1404|Caenorhabditis elegans Hypothetical pr...    28   7.9  
AF098986-2|AAC67423.1|  410|Caenorhabditis elegans Hypothetical ...    28   7.9  

>U97196-2|AAB52461.2|  268|Caenorhabditis elegans Hypothetical
           protein B0207.6 protein.
          Length = 268

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 2/56 (3%)
 Frame = -2

Query: 697 ANDTLTTVCRSNRT--VTKNSIVGGMIFSVLFAVSICFEMIGIAKAWLLQRFSSQH 536
           ANDT+      N T  +T N ++  +      A+  C E +G    WLLQ+  + H
Sbjct: 40  ANDTMAYAPDVNITEMITVNDVMDRLGLGPNGALKYCIETLGANCNWLLQKIEANH 95


>Z69637-7|CAO78728.1|  433|Caenorhabditis elegans Hypothetical
           protein F35G2.1b protein.
          Length = 433

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 15/33 (45%), Positives = 23/33 (69%)
 Frame = +3

Query: 246 IEAPGRRAPPVLAAPKTIAPLTRTTSRRLLECY 344
           +E  GRRAP +L    T+AP+T TT+  L++C+
Sbjct: 116 MEQGGRRAP-ILTT--TLAPVTTTTNTPLIDCH 145


>Z69637-1|CAA93467.1|  601|Caenorhabditis elegans Hypothetical
           protein F35G2.1a protein.
          Length = 601

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 15/33 (45%), Positives = 23/33 (69%)
 Frame = +3

Query: 246 IEAPGRRAPPVLAAPKTIAPLTRTTSRRLLECY 344
           +E  GRRAP +L    T+AP+T TT+  L++C+
Sbjct: 284 MEQGGRRAP-ILTT--TLAPVTTTTNTPLIDCH 313


>U58750-6|AAB00646.1| 2049|Caenorhabditis elegans Rod (drosophila
           roughdeal) homologprotein 1 protein.
          Length = 2049

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = +3

Query: 387 DPAKHRVHVITCHSTEDKCFTSVTSRGSDNNYEAVIRG 500
           +PA H +  + CH+T   C     SR SDN +   + G
Sbjct: 121 EPAPHEIDFVVCHTTSSVCQLIFGSR-SDNWHTITLPG 157


>Z37983-7|CAA86058.1| 1106|Caenorhabditis elegans Hypothetical
           protein B0393.5 protein.
          Length = 1106

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = +3

Query: 501 CKSGCVGSPDTTCCELNRCNN 563
           CK G  G P + C ++N C N
Sbjct: 474 CKDGYEGDPSSECRDVNECKN 494


>U70870-1|AAB51198.1| 1404|Caenorhabditis elegans CELF35-1 protein.
          Length = 1404

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = -1

Query: 482 VVIVAASGRNRREALILCTVTGDHVNSMLG 393
           V IV ++ R+  + LI   + G+HVN M+G
Sbjct: 739 VTIVFSTARDAADYLIASKIRGNHVNVMMG 768


>U40934-5|AAA81683.2| 1404|Caenorhabditis elegans Hypothetical
           protein F35H10.10 protein.
          Length = 1404

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = -1

Query: 482 VVIVAASGRNRREALILCTVTGDHVNSMLG 393
           V IV ++ R+  + LI   + G+HVN M+G
Sbjct: 739 VTIVFSTARDAADYLIASKIRGNHVNVMMG 768


>AF098986-2|AAC67423.1|  410|Caenorhabditis elegans Hypothetical
           protein C36C9.3 protein.
          Length = 410

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 14/52 (26%), Positives = 24/52 (46%)
 Frame = +3

Query: 405 VHVITCHSTEDKCFTSVTSRGSDNNYEAVIRGCKSGCVGSPDTTCCELNRCN 560
           +H  + + +++  F+ +   G    Y+ V  GCK  CV   D T  +L   N
Sbjct: 120 IHNYSVNGSDENNFSRIEYDGYKITYQPVNGGCKVSCVDQYDDTEPKLEPSN 171


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,579,820
Number of Sequences: 27780
Number of extensions: 306462
Number of successful extensions: 959
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 898
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 958
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1724918872
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)