Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte2b22
         (734 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                31   0.015
DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protei...    25   0.98 
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    24   1.7  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    21   9.1  

>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 30.7 bits (66), Expect = 0.015
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = -1

Query: 155 HFGASSHRQQKQHGQNKTVPPPNHFHFRE 69
           H G+S H Q   H    T+ PP+H H  +
Sbjct: 329 HRGSSPHHQHGNHTMGPTMGPPHHHHHHQ 357


>DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protein
           protein.
          Length = 424

 Score = 24.6 bits (51), Expect = 0.98
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = -1

Query: 662 QDRDKEQYSWRHDLFGFVRCEYLFRNDR 579
           +D+ K+ +++  D+ GF    Y FRN R
Sbjct: 190 EDKCKDTFAYIADVTGFALLVYDFRNSR 217


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 7/9 (77%), Positives = 9/9 (100%)
 Frame = -1

Query: 653 DKEQYSWRH 627
           DK+QY+WRH
Sbjct: 384 DKKQYTWRH 392


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.4 bits (43), Expect = 9.1
 Identities = 12/43 (27%), Positives = 17/43 (39%)
 Frame = +2

Query: 575 DADHFETDTHSEQNRKDHAANYTVLCHGPVTSTDGCQSVICLT 703
           + D F+   H E +R   A  +       VTS    QS +  T
Sbjct: 708 EGDSFKVSKHEEVSRTSTAGQFPTNVATTVTSMSIDQSTVIQT 750


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 191,516
Number of Sequences: 438
Number of extensions: 3682
Number of successful extensions: 9
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22901220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)