Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte2b21
(690 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 34 0.017
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 31 0.21
SPBC119.05c |||Wiskott-Aldrich syndrome homolog binding protein ... 29 0.84
SPAC3A11.14c |pkl1|klp1, SPAC3H5.03c|kinesin-like protein Pkl1|S... 29 0.84
SPBC1289.04c |pob1||Boi family protein|Schizosaccharomyces pombe... 28 1.1
SPBC16A3.07c |nrm1||negative regulator of MBF|Schizosaccharomyce... 28 1.5
SPCC320.10 |srp72||signal recognition particle subunit Srp72|Sch... 27 1.9
SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyc... 27 1.9
SPBP8B7.10c |||U3 snoRNP-associated protein Utp16 |Schizosacchar... 27 3.4
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 26 4.5
SPBC3H7.03c |||2-oxoglutarate dehydrogenase |Schizosaccharomyces... 26 4.5
SPBC4F6.06 |kin1||microtubule affinity-regulating kinase Kin1 |S... 26 5.9
SPCC320.03 |||transcription factor |Schizosaccharomyces pombe|ch... 25 7.8
SPBC11B10.08 |||conserved fungal protein|Schizosaccharomyces pom... 25 7.8
SPAC12G12.15 |sif3||Sad1 interacting factor 3|Schizosaccharomyce... 25 7.8
SPAC4H3.02c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 25 7.8
>SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 262
Score = 34.3 bits (75), Expect = 0.017
Identities = 28/106 (26%), Positives = 44/106 (41%), Gaps = 1/106 (0%)
Frame = +1
Query: 241 RGIRSVPPERVSSKPARVASTYTPNPRLYPGPQAKFKKVKRDRATETKPAEPKETQQSKR 420
RG S+P R S+P+ + P P + P ++ + + +T QS
Sbjct: 117 RGTPSLP-SRPGSRPSVLNQEQVPPPPVRPNVMSQMPPPP----SYSSSGSYSQTYQSNA 171
Query: 421 KRFFRRPVPNARLYRPGP-PPPKLISKQARVTWTAVSAGRALDTAS 555
P+P A P P PPP+ +S+ + +V A A TAS
Sbjct: 172 NYTASSPLPTASANAPLPVPPPRRVSQNSSYASGSVPAATAASTAS 217
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 30.7 bits (66), Expect = 0.21
Identities = 16/50 (32%), Positives = 31/50 (62%)
Frame = +1
Query: 82 SAKNQSNLRESAKASSKKEVIVVHSEKIEYSNGLNTLKAELEEEVDIIDL 231
S++++S+ ES+ + S++EVIV EK E S+ ++ EEE ++ +
Sbjct: 107 SSESESSSSESSSSESEEEVIVKTEEKKESSSESSSSSESEEEEEAVVKI 156
>SPBC119.05c |||Wiskott-Aldrich syndrome homolog binding protein
Lsb1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 296
Score = 28.7 bits (61), Expect = 0.84
Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Frame = +1
Query: 238 PRGIRSVPPERVSSKPARVASTYT--PNPRLYPGPQAKFKKVKR 363
PR + VP + S+ + V S+ P P YPGP K V+R
Sbjct: 101 PRKLPGVPAPQKQSEASSVNSSTEKLPPPPSYPGPNTAHKNVER 144
>SPAC3A11.14c |pkl1|klp1, SPAC3H5.03c|kinesin-like protein
Pkl1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 832
Score = 28.7 bits (61), Expect = 0.84
Identities = 21/75 (28%), Positives = 39/75 (52%)
Frame = +1
Query: 7 LEINEWKGFFQSSKFSVIN*EKMVLSAKNQSNLRESAKASSKKEVIVVHSEKIEYSNGLN 186
L++ E K ++ + S I E + K + + E A + E +SEK EY ++
Sbjct: 325 LDLLEMKQQEENDRISHIEYENDLTVKKLKRRISELEMAVKEYESEKSYSEK-EYEEKIS 383
Query: 187 TLKAELEEEVDIIDL 231
+L+ ELE+++ ID+
Sbjct: 384 SLRIELEDKLAEIDM 398
>SPBC1289.04c |pob1||Boi family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 871
Score = 28.3 bits (60), Expect = 1.1
Identities = 30/103 (29%), Positives = 41/103 (39%), Gaps = 13/103 (12%)
Frame = +1
Query: 211 EVDIIDLGAPRGIRSVPPERVSSKPARVASTYTPNPRLYPGPQAKF-------------K 351
++ ID +P I S P S+ +S+ T +P P P AK K
Sbjct: 541 KITTIDGESPSSISSRLPS--SNLEQGSSSSVTKSPESMPDPSAKASSPVTSKGVSINEK 598
Query: 352 KVKRDRATETKPAEPKETQQSKRKRFFRRPVPNARLYRPGPPP 480
+ AT +PK+T+ SK F P P A L P PP
Sbjct: 599 SAVNNYATPLSKPQPKDTKGSKLGNTFVAPSPAASL--PASPP 639
>SPBC16A3.07c |nrm1||negative regulator of MBF|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 342
Score = 27.9 bits (59), Expect = 1.5
Identities = 14/46 (30%), Positives = 20/46 (43%)
Frame = +1
Query: 199 ELEEEVDIIDLGAPRGIRSVPPERVSSKPARVASTYTPNPRLYPGP 336
+L V ++ PR IR + +S P + S PN Y GP
Sbjct: 260 KLTRSVSLLQHKTPRRIRPKSLSKSNSTPLKHLSAQKPNSNYYTGP 305
>SPCC320.10 |srp72||signal recognition particle subunit
Srp72|Schizosaccharomyces pombe|chr 3|||Manual
Length = 561
Score = 27.5 bits (58), Expect = 1.9
Identities = 14/54 (25%), Positives = 25/54 (46%)
Frame = +1
Query: 382 KPAEPKETQQSKRKRFFRRPVPNARLYRPGPPPPKLISKQARVTWTAVSAGRAL 543
+ E + SK+ R R+P P + + P P + I K+ R S G+++
Sbjct: 503 RSVEANSSNSSKKTRKRRKPTPKSFNPKATPDPQRWIPKRDRTNVKIKSKGKSM 556
>SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1428
Score = 27.5 bits (58), Expect = 1.9
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = +1
Query: 124 SSKKEVIVVHSEKIEYSNGLNTLKAELEEE 213
SSK+ IV +IE+ N L L+ +LE E
Sbjct: 340 SSKEAEIVFRKSRIEFMNKLKALQQKLENE 369
>SPBP8B7.10c |||U3 snoRNP-associated protein Utp16
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 346
Score = 26.6 bits (56), Expect = 3.4
Identities = 28/107 (26%), Positives = 50/107 (46%), Gaps = 14/107 (13%)
Frame = +1
Query: 88 KNQSNLRESAK--ASSKKEVIVVHSEKIEYSNGLNTLKAELEEEVD--IIDLGAPRGIRS 255
+N+ N +A+ ++SK ++ ++ + ++E N E+EE+VD +DL P+G +
Sbjct: 225 QNERNRERNAQRVSASKLDLAILEAAEVEEINSTT----EIEEKVDEASLDLYTPKGHKI 280
Query: 256 V-PPERVSSKPAR---------VASTYTPNPRLYPGPQAKFKKVKRD 366
V P + K R T +P L P + K + KRD
Sbjct: 281 VFPNNEIPKKRTRSFRKGDFKVSVLKETNDPLLAPNYEKKLSQRKRD 327
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 26.2 bits (55), Expect = 4.5
Identities = 22/83 (26%), Positives = 35/83 (42%), Gaps = 1/83 (1%)
Frame = +1
Query: 238 PRGIRSVPPERVSSKPARVASTYTPNPRLYPGPQAKFKKVKRDRATETKPAEP-KETQQS 414
P G S+P +++ A + L+ G K + + + A+ P+ P T QS
Sbjct: 76 PTGAPSLPTSSNNTQQAEERPSMPALGGLFAGGMPKLRHIGKSSASAAPPSAPAPPTPQS 135
Query: 415 KRKRFFRRPVPNARLYRPGPPPP 483
+ RP P + RP PPP
Sbjct: 136 E-----LRP-PTSAPPRPSIPPP 152
>SPBC3H7.03c |||2-oxoglutarate dehydrogenase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1009
Score = 26.2 bits (55), Expect = 4.5
Identities = 20/78 (25%), Positives = 34/78 (43%), Gaps = 4/78 (5%)
Frame = +1
Query: 223 IDLGAPRGIRSVPPERVSSKPARVASTYTPNPRLYPGPQAKFKKVKRDRATE----TKPA 390
I L P G PE S++ R +PR +P + K ++ +D + TKP+
Sbjct: 767 IVLSLPHGYDGQGPEHSSARMERYLQLCNEDPREFPS-EEKLQRQHQDCNIQAIYVTKPS 825
Query: 391 EPKETQQSKRKRFFRRPV 444
+ + R FR+P+
Sbjct: 826 QYFHALRRNIHRQFRKPL 843
>SPBC4F6.06 |kin1||microtubule affinity-regulating kinase Kin1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 891
Score = 25.8 bits (54), Expect = 5.9
Identities = 20/100 (20%), Positives = 36/100 (36%)
Frame = +1
Query: 268 RVSSKPARVASTYTPNPRLYPGPQAKFKKVKRDRATETKPAEPKETQQSKRKRFFRRPVP 447
R++ P + P Y +V + E P + T ++RK P+P
Sbjct: 524 RIAKTPVSSVPSSPVQPTSYNRTLPPMPEVVAYKGDEESPRVSRNTSLARRK-----PLP 578
Query: 448 NARLYRPGPPPPKLISKQARVTWTAVSAGRALDTASRAAL 567
+ + P P I K + S+ R + +S + L
Sbjct: 579 DTESHSPSPSATSSIKKNPSSIFRRFSSRRKQNKSSTSTL 618
>SPCC320.03 |||transcription factor |Schizosaccharomyces pombe|chr
3|||Manual
Length = 867
Score = 25.4 bits (53), Expect = 7.8
Identities = 18/81 (22%), Positives = 31/81 (38%)
Frame = +1
Query: 307 TPNPRLYPGPQAKFKKVKRDRATETKPAEPKETQQSKRKRFFRRPVPNARLYRPGPPPPK 486
+P+P+ Y GP D + + P+ S F P PN +Y P P
Sbjct: 271 SPSPQPYSGPILASTAPTLDGSYLSNPSNSNPAVMSLSSNFPSPPKPNNPVYLPPRGNPT 330
Query: 487 LISKQARVTWTAVSAGRALDT 549
+ + + V + S ++ T
Sbjct: 331 VNDRVSNVLPSITSFDSSVTT 351
>SPBC11B10.08 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 204
Score = 25.4 bits (53), Expect = 7.8
Identities = 16/57 (28%), Positives = 24/57 (42%)
Frame = +2
Query: 278 ANPRGSLQPTLLIRDCILGPRRSLKK*RETAQRRPSQLNPRKPNNQSASGSSAGPCP 448
++P+ Q +R + P S+ + PS N P +AS SSA P P
Sbjct: 30 SDPKAKPQWECPVRGLTIPPPPSVDHSAPPSGPPPSYSNSAAPATPAASASSAAPAP 86
>SPAC12G12.15 |sif3||Sad1 interacting factor 3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 510
Score = 25.4 bits (53), Expect = 7.8
Identities = 17/46 (36%), Positives = 21/46 (45%)
Frame = +1
Query: 448 NARLYRPGPPPPKLISKQARVTWTAVSAGRALDTASRAALGLVEER 585
N RL P PP + S+ R+T S R D AA GL + R
Sbjct: 16 NTRLSTPVHIPPPINSESTRITPQHGSPPRFGDHRISAAQGLFQRR 61
>SPAC4H3.02c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 391
Score = 25.4 bits (53), Expect = 7.8
Identities = 13/47 (27%), Positives = 18/47 (38%)
Frame = +1
Query: 262 PERVSSKPARVASTYTPNPRLYPGPQAKFKKVKRDRATETKPAEPKE 402
P+ P + +T L P P+ K K+ E P EP E
Sbjct: 147 PDSQKLSPGKEKNTLDLKHCLLPSPEYKAPPAKKPEDYEASPGEPVE 193
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.313 0.128 0.365
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,585,558
Number of Sequences: 5004
Number of extensions: 48270
Number of successful extensions: 152
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 151
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 319939482
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
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