Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte2b21
         (690 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY375535-1|AAQ82648.1|  147|Apis mellifera doublesex protein.          27   0.13 
X72575-1|CAA51167.1|  168|Apis mellifera Apidaecin precursor pro...    23   2.7  
DQ325077-1|ABD14091.1|  181|Apis mellifera complementary sex det...    22   4.8  
DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex det...    22   4.8  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    22   4.8  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    22   4.8  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    22   4.8  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              22   4.8  
DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex det...    22   6.3  

>AY375535-1|AAQ82648.1|  147|Apis mellifera doublesex protein.
          Length = 147

 Score = 27.5 bits (58), Expect = 0.13
 Identities = 13/51 (25%), Positives = 26/51 (50%)
 Frame = +1

Query: 109 ESAKASSKKEVIVVHSEKIEYSNGLNTLKAELEEEVDIIDLGAPRGIRSVP 261
           E  K ++ ++ ++  + K++     + +K  + EEVD +  G    I SVP
Sbjct: 7   EKCKITANRQQVMRQNMKLKRHLAQDKVKVRVAEEVDPLPFGVENTISSVP 57


>X72575-1|CAA51167.1|  168|Apis mellifera Apidaecin precursor
           protein.
          Length = 168

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 13/54 (24%), Positives = 24/54 (44%)
 Frame = +1

Query: 238 PRGIRSVPPERVSSKPARVASTYTPNPRLYPGPQAKFKKVKRDRATETKPAEPK 399
           PR  R    E  +++P  +     P+PRL   P+A+    +     + +P  P+
Sbjct: 114 PRLRREPEAEPGNNRPVYIPQPRPPHPRLRREPEAEPGNNRPVYIPQPRPPHPR 167


>DQ325077-1|ABD14091.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 14/45 (31%), Positives = 20/45 (44%)
 Frame = +1

Query: 265 ERVSSKPARVASTYTPNPRLYPGPQAKFKKVKRDRATETKPAEPK 399
           +R S    R   +Y  N R Y   + + K+  RDR    +  EPK
Sbjct: 37  KRYSRSREREQKSYK-NERKYRKYRERSKERSRDRTERERSREPK 80


>DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex
           determiner protein.
          Length = 191

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 14/45 (31%), Positives = 20/45 (44%)
 Frame = +1

Query: 265 ERVSSKPARVASTYTPNPRLYPGPQAKFKKVKRDRATETKPAEPK 399
           +R S    R   +Y  N R Y   + + K+  RDR    +  EPK
Sbjct: 37  KRYSRSREREQKSYK-NERKYRKYRERSKERSRDRTERERSREPK 80


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 4/6 (66%), Positives = 5/6 (83%)
 Frame = -3

Query: 670 WWNVCW 653
           WW +CW
Sbjct: 490 WWKICW 495


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 4/6 (66%), Positives = 5/6 (83%)
 Frame = -3

Query: 670 WWNVCW 653
           WW +CW
Sbjct: 543 WWKICW 548


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 10/31 (32%), Positives = 16/31 (51%)
 Frame = +1

Query: 370 ATETKPAEPKETQQSKRKRFFRRPVPNARLY 462
           +TET P+  +       +RFF+   P A +Y
Sbjct: 535 STETPPSYNQLNYNENIERFFKSKPPVATMY 565


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 11/44 (25%), Positives = 20/44 (45%)
 Frame = +1

Query: 355 VKRDRATETKPAEPKETQQSKRKRFFRRPVPNARLYRPGPPPPK 486
           + RD ++     +P  T +S+ +RFF        +Y P    P+
Sbjct: 482 ITRDISSLVVQEQPTPTTESEERRFFSFHQWGILVYEPSACRPR 525


>DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 15/45 (33%), Positives = 21/45 (46%)
 Frame = +1

Query: 265 ERVSSKPARVASTYTPNPRLYPGPQAKFKKVKRDRATETKPAEPK 399
           +R S    R  ++Y  N R Y   +   K+  RDRA   +  EPK
Sbjct: 36  KRNSRSREREQNSYK-NEREYRKYRETSKERSRDRAERERSREPK 79


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.313    0.128    0.365 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 178,470
Number of Sequences: 438
Number of extensions: 3494
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21073995
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)