Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte2b12
(778 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_UPI0000D56FBB Cluster: PREDICTED: similar to RAD51-like... 109 8e-23
UniRef50_O75771 Cluster: DNA repair protein RAD51 homolog 4; n=4... 107 3e-22
UniRef50_Q16EQ5 Cluster: Rad51A protein, putative; n=1; Aedes ae... 105 2e-21
UniRef50_Q4SEP3 Cluster: Chromosome undetermined SCAF14615, whol... 86 1e-15
UniRef50_UPI0000E46317 Cluster: PREDICTED: similar to Trad; n=1;... 79 9e-14
UniRef50_O75771-4 Cluster: Isoform 4 of O75771 ; n=1; Homo sapie... 75 2e-12
UniRef50_Q9LQQ2 Cluster: DNA repair protein RAD51 homolog 4; n=6... 69 1e-10
UniRef50_Q54PJ7 Cluster: Putative DNA repair protein; n=1; Dicty... 62 2e-08
UniRef50_Q7ZTX4 Cluster: Zgc:56581; n=6; Euteleostomi|Rep: Zgc:5... 62 2e-08
UniRef50_A7DQP6 Cluster: RecA/RadA recombinase-like protein; n=1... 62 2e-08
UniRef50_Q8TVF0 Cluster: RadA recombinase; n=1; Methanopyrus kan... 61 3e-08
UniRef50_Q8GXF0 Cluster: DNA repair protein RAD51 homolog 3; n=5... 60 5e-08
UniRef50_Q4E2R1 Cluster: DNA recombination and repair protein RA... 59 1e-07
UniRef50_A1RYZ3 Cluster: Rad51-like; n=1; Thermofilum pendens Hr... 59 1e-07
UniRef50_A2XZT8 Cluster: Putative uncharacterized protein; n=2; ... 58 3e-07
UniRef50_Q386Q5 Cluster: Recombinase Rad51, putative; n=1; Trypa... 58 3e-07
UniRef50_Q1ZXF0 Cluster: Putative DNA repair protein; n=1; Dicty... 57 4e-07
UniRef50_A5DET9 Cluster: Putative uncharacterized protein; n=1; ... 57 6e-07
UniRef50_Q8TUJ3 Cluster: DNA repair protein; n=6; Euryarchaeota|... 57 6e-07
UniRef50_A5UKT8 Cluster: DNA repair protein, RadB; n=1; Methanob... 57 6e-07
UniRef50_Q96449 Cluster: Meiotic recombination protein DMC1 homo... 56 7e-07
UniRef50_UPI0000D55904 Cluster: PREDICTED: similar to Meiotic re... 56 1e-06
UniRef50_Q93YY9 Cluster: RAD51C protein; n=1; Chlamydomonas rein... 55 2e-06
UniRef50_A0NCA9 Cluster: ENSANGP00000029732; n=2; Culicidae|Rep:... 55 2e-06
UniRef50_UPI0000D56C94 Cluster: PREDICTED: similar to RAD51 homo... 55 2e-06
UniRef50_Q17A54 Cluster: Spindle-b recombination protein spn-b; ... 55 2e-06
UniRef50_UPI00006CB33C Cluster: hypothetical protein TTHERM_0045... 54 4e-06
UniRef50_Q7RD33 Cluster: DNA repair protein rhp51; n=1; Plasmodi... 54 4e-06
UniRef50_Q8ZYR9 Cluster: DNA repair and recombination protein ra... 54 4e-06
UniRef50_Q49593 Cluster: DNA repair and recombination protein ra... 54 4e-06
UniRef50_Q3LW29 Cluster: DNA recombination and repair protein; n... 54 5e-06
UniRef50_Q27297 Cluster: DNA repair protein Rad51 homolog; n=12;... 54 5e-06
UniRef50_P25453 Cluster: Meiotic recombination protein DMC1; n=3... 53 7e-06
UniRef50_Q55075 Cluster: DNA repair and recombination protein ra... 52 1e-05
UniRef50_Q4Q3T8 Cluster: Recombinase Rad51, putative; n=3; Leish... 52 2e-05
UniRef50_Q8TWK1 Cluster: RadA recombinase; n=1; Methanopyrus kan... 52 2e-05
UniRef50_Q2IEE4 Cluster: Protein recA; n=1; Anaeromyxobacter deh... 52 2e-05
UniRef50_UPI0000F2B25B Cluster: PREDICTED: similar to RAD51-like... 51 3e-05
UniRef50_A1Z7R8 Cluster: CG2412-PA; n=3; Sophophora|Rep: CG2412-... 51 3e-05
UniRef50_A3LTU6 Cluster: Predicted protein; n=1; Pichia stipitis... 51 3e-05
UniRef50_O15315 Cluster: DNA repair protein RAD51 homolog 2; n=2... 51 3e-05
UniRef50_UPI0000E249BA Cluster: PREDICTED: RAD51 homolog C; n=1;... 51 4e-05
UniRef50_Q5JDP8 Cluster: ATPase, RecA superfamily; n=1; Thermoco... 51 4e-05
UniRef50_O27728 Cluster: DNA repair and recombination protein ra... 51 4e-05
UniRef50_O43502 Cluster: DNA repair protein RAD51 homolog 3; n=3... 51 4e-05
UniRef50_Q69KV4 Cluster: Trad-like protein; n=3; Oryza sativa|Re... 50 5e-05
UniRef50_Q6CMV0 Cluster: Similar to sp|P25301 Saccharomyces cere... 50 5e-05
UniRef50_A5DYZ1 Cluster: Putative uncharacterized protein; n=1; ... 50 6e-05
UniRef50_Q2FSR3 Cluster: ATPase; n=4; Methanomicrobiales|Rep: AT... 50 6e-05
UniRef50_A1RY65 Cluster: Rad51-like; n=1; Thermofilum pendens Hr... 50 6e-05
UniRef50_P25454 Cluster: DNA repair protein RAD51; n=111; Eukary... 50 6e-05
UniRef50_Q06609 Cluster: DNA repair protein RAD51 homolog 1; n=2... 50 6e-05
UniRef50_Q6Q241 Cluster: Putative Rad51B protein; n=1; Chlamydom... 50 9e-05
UniRef50_Q8SZF1 Cluster: RE02671p; n=3; Sophophora|Rep: RE02671p... 50 9e-05
UniRef50_Q2NHD1 Cluster: RadB; n=1; Methanosphaera stadtmanae DS... 50 9e-05
UniRef50_O50248 Cluster: DNA repair and recombination protein ra... 50 9e-05
UniRef50_O28184 Cluster: DNA repair and recombination protein ra... 50 9e-05
UniRef50_UPI0000DB74C1 Cluster: PREDICTED: similar to DNA-repair... 49 1e-04
UniRef50_A4S5M9 Cluster: Predicted protein; n=2; Ostreococcus|Re... 49 1e-04
UniRef50_A4S2Y8 Cluster: Predicted protein; n=1; Ostreococcus lu... 49 1e-04
UniRef50_Q8PZN5 Cluster: DNA repair and recombination protein ra... 48 2e-04
UniRef50_O61128 Cluster: Dmc1 homolog; n=11; Eukaryota|Rep: Dmc1... 48 3e-04
UniRef50_Q9SK02 Cluster: DNA repair protein RAD51 homolog 2; n=6... 48 3e-04
UniRef50_UPI0000499144 Cluster: DNA repair protein RAD51C; n=1; ... 48 3e-04
UniRef50_Q8SZ30 Cluster: RE19845p; n=2; Sophophora|Rep: RE19845p... 48 3e-04
UniRef50_Q6BWA8 Cluster: Similar to sp|P25301 Saccharomyces cere... 48 3e-04
UniRef50_Q00XV2 Cluster: RAD51-like protein 2; n=2; Ostreococcus... 47 5e-04
UniRef50_A2ZKR2 Cluster: Putative uncharacterized protein; n=2; ... 47 5e-04
UniRef50_Q9UUL2 Cluster: DNA repair protein rhp57; n=1; Schizosa... 47 5e-04
UniRef50_Q4N299 Cluster: Putative uncharacterized protein; n=2; ... 47 6e-04
UniRef50_Q5A2U1 Cluster: Putative uncharacterized protein RAD57;... 47 6e-04
UniRef50_Q55WG1 Cluster: Putative uncharacterized protein; n=1; ... 47 6e-04
UniRef50_Q6L2I8 Cluster: DNA repair and recombination protein Ra... 47 6e-04
UniRef50_Q54QU4 Cluster: AAA ATPase domain-containing protein; n... 46 8e-04
UniRef50_Q99131 Cluster: REC2 protein; n=1; Ustilago maydis|Rep:... 46 8e-04
UniRef50_Q757K4 Cluster: AER008Wp; n=1; Eremothecium gossypii|Re... 46 8e-04
UniRef50_Q6FIZ6 Cluster: Similar to sp|P25301 Saccharomyces cere... 46 8e-04
UniRef50_Q8I9U4 Cluster: Recombinase Rad51; n=7; Aconoidasida|Re... 46 0.001
UniRef50_A1CPK9 Cluster: DNA repair protein (Rad57), putative; n... 46 0.001
UniRef50_Q9HPF2 Cluster: DNA repair and recombination protein ra... 46 0.001
UniRef50_UPI0000586FDE Cluster: PREDICTED: similar to RAD51L2/RA... 46 0.001
UniRef50_Q00YW7 Cluster: Meiotic recombination protein DMC1, put... 46 0.001
UniRef50_Q9HJD3 Cluster: DNA repair and recombination protein ra... 46 0.001
UniRef50_UPI0000E47207 Cluster: PREDICTED: hypothetical protein;... 45 0.002
UniRef50_Q1DS44 Cluster: Putative uncharacterized protein; n=1; ... 45 0.002
UniRef50_Q9V2F6 Cluster: DNA repair and recombination protein ra... 45 0.002
UniRef50_O93748 Cluster: DNA repair and recombination protein ra... 45 0.002
UniRef50_A0RYZ3 Cluster: RecA/RadA recombinase related protein; ... 45 0.002
UniRef50_Q9PR61 Cluster: Protein recA; n=1; Ureaplasma parvum|Re... 45 0.002
UniRef50_P38953 Cluster: DNA repair protein RAD55; n=2; Saccharo... 44 0.003
UniRef50_Q6YU07 Cluster: Putative XRCC3; n=2; Oryza sativa|Rep: ... 44 0.004
UniRef50_A6R196 Cluster: DNA repair protein RAD51; n=1; Ajellomy... 44 0.004
UniRef50_A4XGH9 Cluster: RecA-superfamily ATPase implicated in s... 44 0.006
UniRef50_Q24DN8 Cluster: Putative uncharacterized protein; n=1; ... 44 0.006
UniRef50_Q2USE9 Cluster: Predicted protein; n=6; Trichocomaceae|... 44 0.006
UniRef50_A7TGZ2 Cluster: Putative uncharacterized protein; n=1; ... 44 0.006
UniRef50_A2QR86 Cluster: Remark: alternate names = YDR004W; n=1;... 44 0.006
UniRef50_Q8ZTI5 Cluster: DNA repair protein radA; n=5; Pyrobacul... 44 0.006
UniRef50_UPI0000585DAC Cluster: PREDICTED: similar to RAD51-like... 43 0.007
UniRef50_UPI000065EE6A Cluster: DNA-repair protein XRCC3 (X-ray ... 43 0.007
UniRef50_Q01C18 Cluster: Rad51B protein; n=2; Ostreococcus|Rep: ... 43 0.010
UniRef50_Q18FI4 Cluster: DNA repair and recombination protein Ra... 43 0.010
UniRef50_A7D6B3 Cluster: KaiC domain protein; n=6; cellular orga... 43 0.010
UniRef50_Q6CPZ2 Cluster: Kluyveromyces lactis strain NRRL Y-1140... 42 0.013
UniRef50_Q6C269 Cluster: Yarrowia lipolytica chromosome F of str... 42 0.013
UniRef50_A7D6F3 Cluster: KaiC domain protein; n=1; Halorubrum la... 42 0.013
UniRef50_A7ATP8 Cluster: Rad51 protein, putative; n=1; Babesia b... 42 0.017
UniRef50_Q5V0B5 Cluster: Circadian regulator; n=1; Haloarcula ma... 42 0.017
UniRef50_Q2Y4W8 Cluster: Putative uncharacterized protein C5_003... 42 0.017
UniRef50_Q0W7M8 Cluster: Putative uncharacterized protein; n=1; ... 42 0.017
UniRef50_P47581 Cluster: Protein recA; n=2; Mycoplasma|Rep: Prot... 42 0.017
UniRef50_O43542 Cluster: DNA-repair protein XRCC3; n=19; Euteleo... 42 0.023
UniRef50_P25301 Cluster: DNA repair protein RAD57; n=2; Saccharo... 42 0.023
UniRef50_Q0AB05 Cluster: Putative circadian clock protein, KaiC;... 41 0.030
UniRef50_Q3ADP9 Cluster: Conserved domain protein; n=1; Carboxyd... 41 0.040
UniRef50_A2DYQ0 Cluster: Putative uncharacterized protein; n=1; ... 41 0.040
UniRef50_Q9P6E6 Cluster: Related to RAD57 protein; n=2; Neurospo... 41 0.040
UniRef50_Q2GW05 Cluster: Putative uncharacterized protein; n=1; ... 41 0.040
UniRef50_Q0D0U2 Cluster: Putative uncharacterized protein; n=1; ... 41 0.040
UniRef50_Q9HMM4 Cluster: DNA repair and recombination protein ra... 41 0.040
UniRef50_Q657A2 Cluster: DNA repair protein radA (RadA)-like; n=... 40 0.052
UniRef50_Q12XV7 Cluster: KaiC; n=1; Methanococcoides burtonii DS... 40 0.052
UniRef50_Q02AB2 Cluster: RecA domain protein; n=1; Solibacter us... 40 0.069
UniRef50_A6Q0W7 Cluster: Circadian clock protein KaiC; n=1; Nitr... 40 0.069
UniRef50_A4G1Y6 Cluster: Putative uncharacterized protein; n=1; ... 40 0.069
UniRef50_Q0W7N5 Cluster: Predicted ATPase; n=1; uncultured metha... 40 0.069
UniRef50_Q384W8 Cluster: Putative uncharacterized protein; n=1; ... 40 0.092
UniRef50_Q74ZR1 Cluster: AGR137Wp; n=1; Eremothecium gossypii|Re... 40 0.092
UniRef50_A6RPX0 Cluster: Putative uncharacterized protein; n=2; ... 40 0.092
UniRef50_A6QWV8 Cluster: Predicted protein; n=1; Ajellomyces cap... 40 0.092
UniRef50_Q0W053 Cluster: Putative ATPase; n=1; uncultured methan... 40 0.092
UniRef50_Q8EVC7 Cluster: Protein recA; n=2; Mycoplasma|Rep: Prot... 40 0.092
UniRef50_Q08YR0 Cluster: Putative uncharacterized protein; n=1; ... 39 0.12
UniRef50_Q5ULN8 Cluster: Orf76; n=1; Lactobacillus phage LP65|Re... 39 0.12
UniRef50_P74646 Cluster: Circadian clock protein kinase kaiC; n=... 39 0.12
UniRef50_UPI000023E7C1 Cluster: hypothetical protein FG00844.1; ... 39 0.16
UniRef50_A5HL42 Cluster: DNA primase/helicase; n=1; Phormidium p... 39 0.16
UniRef50_A7E7I5 Cluster: Putative uncharacterized protein; n=1; ... 39 0.16
UniRef50_Q89T73 Cluster: Protein recA; n=9; Bacteria|Rep: Protei... 38 0.21
UniRef50_Q3LBT9 Cluster: Replicative DNA helicase dnaC; n=1; Can... 38 0.21
UniRef50_Q189H2 Cluster: Putative phage-related replicative heli... 38 0.21
UniRef50_Q30L73 Cluster: Gp72; n=1; Listeria phage P100|Rep: Gp7... 38 0.21
UniRef50_Q1DNF7 Cluster: Putative uncharacterized protein; n=1; ... 38 0.21
UniRef50_Q5UXD0 Cluster: Circadian regulator; n=3; Halobacteriac... 38 0.21
UniRef50_Q14565 Cluster: Meiotic recombination protein DMC1/LIM1... 38 0.21
UniRef50_Q0YMC6 Cluster: ATPase; n=1; Geobacter sp. FRC-32|Rep: ... 38 0.28
UniRef50_Q08N73 Cluster: Protein recA; n=2; Cystobacterineae|Rep... 38 0.28
UniRef50_A1WZ80 Cluster: Putative circadian clock protein, KaiC;... 38 0.28
UniRef50_Q580V2 Cluster: DNA repair protein, putative; n=1; Tryp... 38 0.28
UniRef50_Q0W7M6 Cluster: Putative uncharacterized protein; n=1; ... 38 0.28
UniRef50_Q9RVC4 Cluster: DNA repair protein radA; n=4; Deinococc... 38 0.37
UniRef50_Q48N05 Cluster: Circadian oscillation regulator KaiC ho... 38 0.37
UniRef50_Q4CYK4 Cluster: DNA repair protein, putative; n=2; Tryp... 38 0.37
UniRef50_A4R1B5 Cluster: Putative uncharacterized protein; n=1; ... 38 0.37
UniRef50_Q12V32 Cluster: KaiC; n=1; Methanococcoides burtonii DS... 38 0.37
UniRef50_O14129 Cluster: DNA repair protein rhp55; n=1; Schizosa... 38 0.37
UniRef50_Q1QT32 Cluster: Putative circadian clock protein, KaiC;... 37 0.49
UniRef50_Q1CXY6 Cluster: Putative uncharacterized protein; n=2; ... 37 0.49
UniRef50_Q1JSB1 Cluster: Putative uncharacterized protein; n=1; ... 37 0.49
UniRef50_A2BKD6 Cluster: Universally conserved protein; n=1; Hyp... 37 0.49
UniRef50_Q1VUX3 Cluster: Putative uncharacterized protein; n=3; ... 37 0.65
UniRef50_Q4Z9W4 Cluster: ORF021; n=4; unclassified Myoviridae|Re... 37 0.65
UniRef50_A0DFA4 Cluster: Chromosome undetermined scaffold_49, wh... 37 0.65
UniRef50_Q9V2A5 Cluster: RecA superfamily ATPase implicated in s... 37 0.65
UniRef50_A7IAV9 Cluster: HTR-like protein; n=1; Candidatus Metha... 37 0.65
UniRef50_UPI00006DCE56 Cluster: hypothetical protein CdifQ_04003... 36 0.85
UniRef50_UPI00005889FA Cluster: PREDICTED: similar to LOC553395 ... 36 0.85
UniRef50_Q8F261 Cluster: DNA repair protein radA-like protein; n... 36 0.85
UniRef50_Q7D3Y2 Cluster: AGR_pAT_129p; n=4; Rhizobiaceae|Rep: AG... 36 0.85
UniRef50_A5NQF2 Cluster: KaiC domain protein; n=1; Methylobacter... 36 0.85
UniRef50_A7AT31 Cluster: Putative uncharacterized protein; n=1; ... 36 0.85
UniRef50_Q5JDZ8 Cluster: ATPase, RecA superfamily; n=1; Thermoco... 36 0.85
UniRef50_Q9FKM5 Cluster: DNA-repair protein XRCC3 homolog; n=18;... 36 0.85
UniRef50_P73860 Cluster: KaiC-like protein 1; n=17; cellular org... 36 0.85
UniRef50_A7HJZ5 Cluster: DNA repair protein RadA; n=2; Thermotog... 36 1.1
UniRef50_A6LZR9 Cluster: AAA ATPase; n=8; Clostridium|Rep: AAA A... 36 1.1
UniRef50_A5D4Z4 Cluster: BioD-like N-terminal domain of phosphot... 36 1.1
UniRef50_A7SD26 Cluster: Predicted protein; n=1; Nematostella ve... 36 1.1
UniRef50_Q6FM82 Cluster: Similar to sp|P38953 Saccharomyces cere... 36 1.1
UniRef50_A6STQ0 Cluster: Putative uncharacterized protein; n=1; ... 36 1.1
UniRef50_UPI0000DAE4B2 Cluster: hypothetical protein Rgryl_01000... 36 1.5
UniRef50_Q57192 Cluster: L.oenos plasmid p4028 ORF1, ORF2, ORF3,... 36 1.5
UniRef50_Q54G98 Cluster: AAA ATPase domain-containing protein; n... 36 1.5
UniRef50_Q0V430 Cluster: Putative uncharacterized protein; n=1; ... 36 1.5
UniRef50_Q5JES3 Cluster: ATPase, RecA superfamily; n=1; Thermoco... 36 1.5
UniRef50_Q12VV6 Cluster: KaiC; n=1; Methanococcoides burtonii DS... 36 1.5
UniRef50_Q566S1 Cluster: LOC553395 protein; n=4; Danio rerio|Rep... 35 2.0
UniRef50_Q8C610 Cluster: Adult male testis cDNA, RIKEN full-leng... 35 2.0
UniRef50_A6SQA9 Cluster: Putative uncharacterized protein; n=1; ... 35 2.0
UniRef50_A2BJC1 Cluster: RecA-like ATPase; n=1; Hyperthermus but... 35 2.0
UniRef50_A3KGI2 Cluster: RAD51 homolog; n=1; Mus musculus|Rep: R... 35 2.6
UniRef50_Q0HEC7 Cluster: KAP P-loop domain protein; n=3; Shewane... 35 2.6
UniRef50_Q08XB9 Cluster: KaiC domain protein; n=1; Stigmatella a... 35 2.6
UniRef50_A5W1R9 Cluster: Non-specific serine/threonine protein k... 35 2.6
UniRef50_A5D488 Cluster: RecA-superfamily ATPase; n=1; Pelotomac... 35 2.6
UniRef50_A4XK90 Cluster: Putative circadian clock protein, KaiC;... 35 2.6
UniRef50_Q871P4 Cluster: Related to ubiquitin-specific proteinas... 35 2.6
UniRef50_O58001 Cluster: DNA repair and recombination protein ra... 35 2.6
UniRef50_UPI00015BAB16 Cluster: putative circadian clock protein... 34 3.4
UniRef50_UPI000067400A Cluster: hypothetical protein Bpse4_03000... 34 3.4
UniRef50_Q4A748 Cluster: Chromosomal replication initiator prote... 34 3.4
UniRef50_A0YNR9 Cluster: DNA repair protein radA; n=3; Cyanobact... 34 3.4
UniRef50_A3FQA6 Cluster: Putative uncharacterized protein; n=2; ... 34 3.4
UniRef50_Q5B8N2 Cluster: Putative uncharacterized protein; n=1; ... 34 3.4
UniRef50_Q9YE25 Cluster: Putative uncharacterized protein; n=1; ... 34 3.4
UniRef50_Q5V5J9 Cluster: RecA/helicase-like; n=1; Haloarcula mar... 34 3.4
UniRef50_O29896 Cluster: Putative uncharacterized protein; n=1; ... 34 3.4
UniRef50_UPI0000DAE56D Cluster: hypothetical protein Rgryl_01000... 34 4.6
UniRef50_Q6MRN7 Cluster: DnaB protein; n=1; Bdellovibrio bacteri... 34 4.6
UniRef50_Q4HNQ7 Cluster: Putative uncharacterized protein; n=1; ... 34 4.6
UniRef50_Q01QX0 Cluster: RecA domain protein; n=1; Solibacter us... 34 4.6
UniRef50_A5KMI4 Cluster: Putative uncharacterized protein; n=1; ... 34 4.6
UniRef50_A4JVD4 Cluster: IcmO protein; n=2; Proteobacteria|Rep: ... 34 4.6
UniRef50_Q3IA99 Cluster: Disease resistance protein; n=1; Phaseo... 34 4.6
UniRef50_A5K641 Cluster: Putative uncharacterized protein; n=2; ... 34 4.6
UniRef50_A3FQK6 Cluster: Putative uncharacterized protein; n=1; ... 34 4.6
UniRef50_Q3IML2 Cluster: Probable KaiC-like transcriptional regu... 34 4.6
UniRef50_Q2FNQ2 Cluster: Putative circadian clock protein, KaiC;... 34 4.6
UniRef50_P43705 Cluster: Protein recA; n=176; root|Rep: Protein ... 34 4.6
UniRef50_Q5JET4 Cluster: DNA repair and recombination protein ra... 34 4.6
UniRef50_O66827 Cluster: DNA repair protein radA homolog; n=1; A... 34 4.6
UniRef50_Q4S4D7 Cluster: Chromosome 2 SCAF14738, whole genome sh... 33 6.0
UniRef50_A3KGH9 Cluster: RAD51 homolog; n=13; Eukaryota|Rep: RAD... 33 6.0
UniRef50_Q97J22 Cluster: UVRA-like protein, probably involved in... 33 6.0
UniRef50_Q6MBT0 Cluster: Putative excinuclease ABC chain A; n=1;... 33 6.0
UniRef50_A6LBI5 Cluster: Replicative DNA helicase; n=1; Parabact... 33 6.0
UniRef50_A4A535 Cluster: Exopolysaccharide biosynthesis protein;... 33 6.0
UniRef50_A2UBG3 Cluster: Cobyrinic acid a,c-diamide synthase; n=... 33 6.0
UniRef50_A0H0V2 Cluster: KaiC; n=1; Chloroflexus aggregans DSM 9... 33 6.0
UniRef50_Q555F1 Cluster: Putative uncharacterized protein; n=2; ... 33 6.0
UniRef50_Q4CWC1 Cluster: DNA repair protein, putative; n=3; Tryp... 33 6.0
UniRef50_Q4PC21 Cluster: Putative uncharacterized protein; n=1; ... 33 6.0
UniRef50_Q8PZS8 Cluster: Flagella related protein FlaH; n=3; Met... 33 6.0
UniRef50_Q39199 Cluster: DNA repair protein recA homolog 1, chlo... 33 6.0
UniRef50_Q59486 Cluster: Protein recA, plasmid; n=2; Lactococcus... 33 6.0
UniRef50_P08098 Cluster: Mobilization protein A; n=6; Enterobact... 33 6.0
UniRef50_Q8EWP8 Cluster: Predicted cytoskeletal protein; n=1; My... 33 8.0
UniRef50_Q6LUG7 Cluster: DNA repair protein radA; n=7; Proteobac... 33 8.0
UniRef50_Q1PXH1 Cluster: Putative uncharacterized protein; n=1; ... 33 8.0
UniRef50_A5ZGX7 Cluster: Putative uncharacterized protein; n=1; ... 33 8.0
UniRef50_A7REW6 Cluster: Predicted protein; n=1; Nematostella ve... 33 8.0
UniRef50_Q4JB87 Cluster: Conserved protein; n=7; Thermoprotei|Re... 33 8.0
UniRef50_Q3SA55 Cluster: ATPase RecA-superfamily; n=1; unculture... 33 8.0
>UniRef50_UPI0000D56FBB Cluster: PREDICTED: similar to RAD51-like 3;
n=1; Tribolium castaneum|Rep: PREDICTED: similar to
RAD51-like 3 - Tribolium castaneum
Length = 339
Score = 109 bits (262), Expect = 8e-23
Identities = 56/176 (31%), Positives = 98/176 (55%)
Frame = +1
Query: 196 LTDHVIKMLFQSRIITILDFLQEDVEKLSNICKLSIPQILEARNRILTKFSAPVINGSCF 375
LT+ V+K L ++ T+ DF++ D +++ I +L+ ++ +N +L KFSA +NG F
Sbjct: 38 LTEDVVKALHGRKVWTVGDFVKVDTQQIIKIARLNFREVRAVKNYLLKKFSATPVNGFDF 97
Query: 376 IDKIRKGTISIKSGVKNLDNMLNRGIPAKTITELCGIAGSGKTQLALQIAINCAKETHKT 555
+ K T I +G+K +D +LN G+ I ELCG SGKT L + N +
Sbjct: 98 YKNVLKNTAIIPTGIKGVDQLLNGGLFTGNIYELCGPPASGKTHFVLTLIKNVILNMDQN 157
Query: 556 VLYIDTKGDFSALRIQKILEKCQYSFKEVAAIMSRIHISYIWTMEELVNLFKNLKN 723
V DTK DFSA++++++L+ C + + + +I ++ +T +L+N +KN
Sbjct: 158 VHIFDTKNDFSAVKMKQMLKNCDEDRRTKS--LGKIIVNRCYTRYDLINSLYEIKN 211
>UniRef50_O75771 Cluster: DNA repair protein RAD51 homolog 4; n=42;
Euteleostomi|Rep: DNA repair protein RAD51 homolog 4 -
Homo sapiens (Human)
Length = 328
Score = 107 bits (257), Expect = 3e-22
Identities = 52/175 (29%), Positives = 105/175 (60%)
Frame = +1
Query: 196 LTDHVIKMLFQSRIITILDFLQEDVEKLSNICKLSIPQILEARNRILTKFSAPVINGSCF 375
LT+ +I++L RI T++D + D+E+++ C LS ++ R +L +FSA +NG+
Sbjct: 12 LTEEMIQLLRSHRIKTVVDLVSADLEEVAQKCGLSYKALVALRRVLLAQFSAFPVNGADL 71
Query: 376 IDKIRKGTISIKSGVKNLDNMLNRGIPAKTITELCGIAGSGKTQLALQIAINCAKETHKT 555
++++ T + +G+ +LD +L+ G+ +TE+ G GSGKTQ+ L +A N A +
Sbjct: 72 YEELKTSTAILSTGIGSLDKLLDAGLYTGEVTEIVGGPGSGKTQVCLCMAANVAHGLQQN 131
Query: 556 VLYIDTKGDFSALRIQKILEKCQYSFKEVAAIMSRIHISYIWTMEELVNLFKNLK 720
VLY+D+ G +A R+ ++L+ +E A + RI + + + + +++++ + L+
Sbjct: 132 VLYVDSNGGLTASRLLQLLQAKTQDEEEQAEALRRIQVVHAFDIFQMLDVLQELR 186
>UniRef50_Q16EQ5 Cluster: Rad51A protein, putative; n=1; Aedes
aegypti|Rep: Rad51A protein, putative - Aedes aegypti
(Yellowfever mosquito)
Length = 329
Score = 105 bits (251), Expect = 2e-21
Identities = 58/175 (33%), Positives = 98/175 (56%)
Frame = +1
Query: 193 ALTDHVIKMLFQSRIITILDFLQEDVEKLSNICKLSIPQILEARNRILTKFSAPVINGSC 372
ALT++VIK+L ++RI T+ DF + + ++L + LS +I + + ++FS I
Sbjct: 11 ALTEYVIKLLQKNRIHTVYDFAKTEDDRLMRVSNLSYEEISFVKKELTSRFSGNCIQVVE 70
Query: 373 FIDKIRKGTISIKSGVKNLDNMLNRGIPAKTITELCGIAGSGKTQLALQIAINCAKETHK 552
+ + +K+G++ LD +L G+ + E+ G + SGKTQ+ + +A N A+
Sbjct: 71 YFRYLEDLVEPLKTGIRGLDLLLEGGLLPGHVMEIFGDSSSGKTQICVTMAANIARNHKF 130
Query: 553 TVLYIDTKGDFSALRIQKILEKCQYSFKEVAAIMSRIHISYIWTMEELVNLFKNL 717
V Y+DTK DF A RI KILE + S +E+ M RI + I + E L+ ++L
Sbjct: 131 DVFYVDTKCDFFARRIHKILELNKCSVQEIQETMGRIKVERILSPESLIKTMEDL 185
>UniRef50_Q4SEP3 Cluster: Chromosome undetermined SCAF14615, whole
genome shotgun sequence; n=2; Tetraodontidae|Rep:
Chromosome undetermined SCAF14615, whole genome shotgun
sequence - Tetraodon nigroviridis (Green puffer)
Length = 332
Score = 85.8 bits (203), Expect = 1e-15
Identities = 48/177 (27%), Positives = 94/177 (53%)
Frame = +1
Query: 196 LTDHVIKMLFQSRIITILDFLQEDVEKLSNICKLSIPQILEARNRILTKFSAPVINGSCF 375
L +++ L + I T+ D + D+E+L+ C +S +L R +L + +A ++G+
Sbjct: 12 LDQQLLRDLRSADIKTVEDLVSSDIEELAQKCCVSYKALLAVRRVLLAQHTAFPVSGADL 71
Query: 376 IDKIRKGTISIKSGVKNLDNMLNRGIPAKTITELCGIAGSGKTQLALQIAINCAKETHKT 555
+++ T + SG +LD +L+ G ITEL G GSGK+Q+ A++ + ++
Sbjct: 72 YEELLSSTAILSSGNPSLDKLLDSGFYTGEITELSGGPGSGKSQVCFAAAVHISLHLKQS 131
Query: 556 VLYIDTKGDFSALRIQKILEKCQYSFKEVAAIMSRIHISYIWTMEELVNLFKNLKNG 726
V+++DT G +A R+ ++LE E + RIH+ ++ + L++ L+ G
Sbjct: 132 VVFVDTTGGLTAGRLLQMLEAESSKRDEQMEALQRIHVFRLFDVFSLLDCLYALRAG 188
>UniRef50_UPI0000E46317 Cluster: PREDICTED: similar to Trad; n=1;
Strongylocentrotus purpuratus|Rep: PREDICTED: similar to
Trad - Strongylocentrotus purpuratus
Length = 208
Score = 79.4 bits (187), Expect = 9e-14
Identities = 41/133 (30%), Positives = 74/133 (55%)
Frame = +1
Query: 322 RNRILTKFSAPVINGSCFIDKIRKGTISIKSGVKNLDNMLNRGIPAKTITELCGIAGSGK 501
R +L ++SA INGS D++ + +G ++D +L+ G+ +TE+ G A GK
Sbjct: 17 RRLLLAQYSAFPINGSDLYDEVISTVAYLSTGCDSIDKLLDGGVYTSELTEIVGQAAVGK 76
Query: 502 TQLALQIAINCAKETHKTVLYIDTKGDFSALRIQKILEKCQYSFKEVAAIMSRIHISYIW 681
TQ L +A A + + VL+IDT G F A R+ I+ S K +A + ++H + +
Sbjct: 77 TQFCLTLASCVAVSSEQNVLFIDTNGGFHASRLHDIIAHKSTSEKITSAALHKVHCATTF 136
Query: 682 TMEELVNLFKNLK 720
+ +L++L +++K
Sbjct: 137 DLYDLLDLLESIK 149
>UniRef50_O75771-4 Cluster: Isoform 4 of O75771 ; n=1; Homo
sapiens|Rep: Isoform 4 of O75771 - Homo sapiens (Human)
Length = 283
Score = 75.4 bits (177), Expect = 2e-12
Identities = 35/104 (33%), Positives = 65/104 (62%)
Frame = +1
Query: 196 LTDHVIKMLFQSRIITILDFLQEDVEKLSNICKLSIPQILEARNRILTKFSAPVINGSCF 375
LT+ +I++L RI T++D + D+E+++ C LS ++ R +L +FSA +NG+
Sbjct: 12 LTEEMIQLLRSHRIKTVVDLVSADLEEVAQKCGLSYKALVALRRVLLAQFSAFPVNGADL 71
Query: 376 IDKIRKGTISIKSGVKNLDNMLNRGIPAKTITELCGIAGSGKTQ 507
++++ T + +G+ +LD +L+ G+ +TE+ G GSGKTQ
Sbjct: 72 YEELKTSTAILSTGIGSLDKLLDAGLYTGEVTEIVGGPGSGKTQ 115
>UniRef50_Q9LQQ2 Cluster: DNA repair protein RAD51 homolog 4; n=6;
Arabidopsis thaliana|Rep: DNA repair protein RAD51
homolog 4 - Arabidopsis thaliana (Mouse-ear cress)
Length = 322
Score = 69.3 bits (162), Expect = 1e-10
Identities = 49/168 (29%), Positives = 86/168 (51%), Gaps = 6/168 (3%)
Frame = +1
Query: 235 IITILDFLQEDVEKLSNICK--LSIPQILEARNRILTKFSA---PVINGSCFIDKIRKGT 399
I+TI DFL D+ +L+ + + ++ E IL+ P++NG ++ + +
Sbjct: 27 ILTIEDFLLHDLYELTAFSQRQTNADRLKEGITLILSLIERQCRPLVNGLKLLEDLHRNK 86
Query: 400 ISIKSGVKNLDNMLNRGIPAKTITELCGIAGSGKTQLALQIAINCAKETHKTVLYIDTKG 579
++ +G K D++L G +TEL G + SGKTQ +Q A + A+ VLY+DT
Sbjct: 87 HTLSTGDKETDSLLQGGFREGQLTELVGPSSSGKTQFCMQAAASVAENHLGRVLYLDTGN 146
Query: 580 DFSALRIQKILEKCQYSFKEVA-AIMSRIHISYIWTMEELVNLFKNLK 720
FSA RI + + C S + +MSRI ++ + L + ++L+
Sbjct: 147 SFSARRIAQFI--CSSSDATLGQKVMSRILCHTVYDIYTLFDTLQDLE 192
>UniRef50_Q54PJ7 Cluster: Putative DNA repair protein; n=1;
Dictyostelium discoideum AX4|Rep: Putative DNA repair
protein - Dictyostelium discoideum AX4
Length = 381
Score = 62.1 bits (144), Expect = 2e-08
Identities = 35/110 (31%), Positives = 56/110 (50%), Gaps = 5/110 (4%)
Frame = +1
Query: 388 RKGTISIKSGVKNLDNMLNRGIPAKTITELCGIAGSGKTQLALQIAINCA-----KETHK 552
R G +I + +D MLN G P K ITE+CG+ G GKT +A Q+ +N +
Sbjct: 58 RDGNNNIITFCSEIDQMLNGGTPLKKITEICGVPGIGKTNMAFQLLVNTSIPFDLGGVQG 117
Query: 553 TVLYIDTKGDFSALRIQKILEKCQYSFKEVAAIMSRIHISYIWTMEELVN 702
+YIDT+G +S R++++ + V +YI T+E ++N
Sbjct: 118 KAIYIDTEGSYSCQRVREMATHLVNHLECVLLKNPMTQTTYIPTVETVLN 167
>UniRef50_Q7ZTX4 Cluster: Zgc:56581; n=6; Euteleostomi|Rep:
Zgc:56581 - Danio rerio (Zebrafish) (Brachydanio rerio)
Length = 373
Score = 61.7 bits (143), Expect = 2e-08
Identities = 44/153 (28%), Positives = 78/153 (50%), Gaps = 5/153 (3%)
Frame = +1
Query: 220 LFQSRIITILDFLQEDVEKLSNICKLSIPQILEARNRILTKFSAPVINGSCFIDKIRKGT 399
L + ++ T D L +LS + LS P L + R+++K AP + + + K RK
Sbjct: 19 LKRHQLETCQDVLSVTQVELSRLAGLSYPAALNLQ-RLVSKACAPAVITALDLWK-RKEE 76
Query: 400 ISIKSGVKNLDNMLNRGIPAKTITELCGIAGSGKTQLALQIAI-----NCAKETHKTVLY 564
+ + + LD +L+ G+P +TE+ G +G GKTQL + +++ V+Y
Sbjct: 77 LCFSTSLPALDRLLHGGLPRGALTEVTGPSGCGKTQLCMMLSVLATLPKSLGGLDSGVIY 136
Query: 565 IDTKGDFSALRIQKILEKCQYSFKEVAAIMSRI 663
IDT+ FSA ++++E Q F E ++ R+
Sbjct: 137 IDTESAFSA---ERLVEMAQSRFPEFFSVKERL 166
>UniRef50_A7DQP6 Cluster: RecA/RadA recombinase-like protein; n=1;
Candidatus Nitrosopumilus maritimus SCM1|Rep: RecA/RadA
recombinase-like protein - Candidatus Nitrosopumilus
maritimus SCM1
Length = 217
Score = 61.7 bits (143), Expect = 2e-08
Identities = 39/105 (37%), Positives = 60/105 (57%)
Frame = +1
Query: 406 IKSGVKNLDNMLNRGIPAKTITELCGIAGSGKTQLALQIAINCAKETHKTVLYIDTKGDF 585
I +G++ LD L GIP I ++ G G+GKTQL LQ+AIN K+ VLY DT G F
Sbjct: 2 ISTGLEKLDKSLFGGIPNGVIVDIFGKNGTGKTQLLLQLAINSIKKGGH-VLYFDTTGGF 60
Query: 586 SALRIQKILEKCQYSFKEVAAIMSRIHISYIWTMEELVNLFKNLK 720
R ++IL+ Q + + +++I +S + E +N KN++
Sbjct: 61 ---RPERILD-IQKESESQSDFLNQITVSRLTNTSEQINSIKNIE 101
>UniRef50_Q8TVF0 Cluster: RadA recombinase; n=1; Methanopyrus
kandleri|Rep: RadA recombinase - Methanopyrus kandleri
Length = 317
Score = 61.3 bits (142), Expect = 3e-08
Identities = 45/161 (27%), Positives = 78/161 (48%), Gaps = 8/161 (4%)
Frame = +1
Query: 157 IKMQKLTHVEGTALTDHVIKMLFQSRIITILDFLQEDVEKLSNICKLS---IPQILEARN 327
+K +KL+ ++ L D +K L + I+T+ DF+ D + LS + +S + I E
Sbjct: 1 MKERKLSDLD--LLPDETVKKLEEKGIVTVEDFIYADPKYLSEVTGMSERDVEDIQEELR 58
Query: 328 RILTKFSAPVINGSCFIDKIRKGTISIKSGVKNLDNMLNRGIPAKTITELCGIAGSGKTQ 507
I +F ++K+ + I +G LD +L G+P +TE G GSGK+Q
Sbjct: 59 NIDVEFET--------LEKLERKRRRITTGSSALDEILGGGVPCGELTEFAGPFGSGKSQ 110
Query: 508 LALQIAINCAKETHK-----TVLYIDTKGDFSALRIQKILE 615
+ Q+ +N + ++IDT+G S RI+ + E
Sbjct: 111 IVFQLCVNVQLPEEEGGLESKAIFIDTEGTVSPGRIKGMAE 151
>UniRef50_Q8GXF0 Cluster: DNA repair protein RAD51 homolog 3; n=5;
Magnoliophyta|Rep: DNA repair protein RAD51 homolog 3 -
Arabidopsis thaliana (Mouse-ear cress)
Length = 363
Score = 60.5 bits (140), Expect = 5e-08
Identities = 43/149 (28%), Positives = 72/149 (48%), Gaps = 9/149 (6%)
Frame = +1
Query: 241 TILDFLQEDVEKLSNICKLSIPQILEARNRILTKFSAPVINGSCFI-DKIRK--GTISIK 411
+I D+ + +NI + +IL+ N+ S +ING+ D + + I
Sbjct: 47 SIASVSSSDLARDANITEEEAFEILKLANQSCCNGSRSLINGAKNAWDMLHEEESLPRIT 106
Query: 412 SGVKNLDNMLNRGIPAKTITELCGIAGSGKTQLALQIAIN------CAKETHKTVLYIDT 573
+ +LDN+L GI + +TE+ G+ G GKTQ+ +Q+++N C K + YIDT
Sbjct: 107 TSCSDLDNILGGGISCRDVTEIGGVPGIGKTQIGIQLSVNVQIPRECGGLGGKAI-YIDT 165
Query: 574 KGDFSALRIQKILEKCQYSFKEVAAIMSR 660
+G F R +I E C +E M +
Sbjct: 166 EGSFMVERALQIAEACVEDMEEYTGYMHK 194
>UniRef50_Q4E2R1 Cluster: DNA recombination and repair protein
RAD51, putative; n=1; Trypanosoma cruzi|Rep: DNA
recombination and repair protein RAD51, putative -
Trypanosoma cruzi
Length = 492
Score = 59.3 bits (137), Expect = 1e-07
Identities = 28/79 (35%), Positives = 46/79 (58%), Gaps = 5/79 (6%)
Frame = +1
Query: 421 KNLDNMLNRGIPAKTITELCGIAGSGKTQLALQIAINC--AKE---THKTVLYIDTKGDF 585
+ +D +L G+P ++E+CG G GKTQ+ +Q+A+NC +E H + L+IDT+G F
Sbjct: 128 RGIDTLLGGGLPVGAVSEVCGAPGVGKTQMLMQLAVNCLLPRELGGLHGSCLFIDTEGSF 187
Query: 586 SALRIQKILEKCQYSFKEV 642
R ++I KE+
Sbjct: 188 VPERFREIAHAAVMQVKEI 206
>UniRef50_A1RYZ3 Cluster: Rad51-like; n=1; Thermofilum pendens Hrk
5|Rep: Rad51-like - Thermofilum pendens (strain Hrk 5)
Length = 315
Score = 59.3 bits (137), Expect = 1e-07
Identities = 45/161 (27%), Positives = 77/161 (47%), Gaps = 7/161 (4%)
Frame = +1
Query: 157 IKMQKLTHVEGTALTDHVIKMLFQSRIITILDFLQEDVEKLSNICKLSIPQILEARN--R 330
I +++L EG I L + I T+ D + + E+L + + + L R
Sbjct: 3 IPIEELGKEEGIGRV--TISRLKSAGIETVEDLVLYNPEELEELAGIDFERALRLVRTAR 60
Query: 331 ILTKFSAPVINGSCFIDKIRKGTISIKSGVKNLDNMLNRGIPAKTITELCGIAGSGKTQL 510
L + + G + ++ + S+ +GVK LD +L G+ + I E G GSGKTQL
Sbjct: 61 RLAGWEVRAVRGDEYASQLSQRE-SLTTGVKALDELLEGGLVTQEIYEFAGEYGSGKTQL 119
Query: 511 ALQIAINCAKETHK-----TVLYIDTKGDFSALRIQKILEK 618
Q+++ + V+Y+DT+G FS RI++I E+
Sbjct: 120 CHQLSVTAQLPPSRGGLGGKVVYVDTEGTFSPSRIERIAER 160
>UniRef50_A2XZT8 Cluster: Putative uncharacterized protein; n=2;
Oryza sativa|Rep: Putative uncharacterized protein -
Oryza sativa subsp. indica (Rice)
Length = 353
Score = 57.6 bits (133), Expect = 3e-07
Identities = 43/147 (29%), Positives = 68/147 (46%), Gaps = 6/147 (4%)
Frame = +1
Query: 196 LTDHVIKMLFQSRIITILDFLQEDVEKLSNICKLSIPQILEARNRILTKFSAPVINGSCF 375
L H+ +L R+ T D L +L + I A + P
Sbjct: 11 LPPHLAHILAARRLTTAKDVLSLPEVELMGVLDAGIHTARAAVAHVSEIACPPYQTALAL 70
Query: 376 IDKIR-KGTISIKSGVKNLDNMLNRGIPAKTITELCGIAGSGKTQLALQIAI-----NCA 537
++ R +G + + ++ LD L+ GIPA +TE+ G +G GKTQ L++A+ C
Sbjct: 71 LEAFRARGDGRLATTLRGLDEALHGGIPAGKLTEVVGPSGIGKTQFCLKLALLATLPECY 130
Query: 538 KETHKTVLYIDTKGDFSALRIQKILEK 618
+ VLYIDT+ FS+ R+ +I EK
Sbjct: 131 GGLNGRVLYIDTESKFSSRRMIEIGEK 157
>UniRef50_Q386Q5 Cluster: Recombinase Rad51, putative; n=1;
Trypanosoma brucei|Rep: Recombinase Rad51, putative -
Trypanosoma brucei
Length = 507
Score = 57.6 bits (133), Expect = 3e-07
Identities = 32/89 (35%), Positives = 51/89 (57%), Gaps = 5/89 (5%)
Frame = +1
Query: 391 KGTISIKSGVKNLDNMLNRGIPAKTITELCGIAGSGKTQLALQIAINCA--KE---THKT 555
KG ++ + ++LD +L G+ T+TE+CG G GKTQL++Q+A+NC KE
Sbjct: 101 KGIENVTTLCRSLDILLGGGLQVGTLTEICGPPGVGKTQLSMQLAVNCVLPKELGGLQGG 160
Query: 556 VLYIDTKGDFSALRIQKILEKCQYSFKEV 642
L+IDT+G F R ++I +E+
Sbjct: 161 CLFIDTEGSFLPERFREIASAAVGHVREI 189
>UniRef50_Q1ZXF0 Cluster: Putative DNA repair protein; n=1;
Dictyostelium discoideum AX4|Rep: Putative DNA repair
protein - Dictyostelium discoideum AX4
Length = 354
Score = 57.2 bits (132), Expect = 4e-07
Identities = 40/148 (27%), Positives = 73/148 (49%), Gaps = 2/148 (1%)
Frame = +1
Query: 202 DHVIKMLFQSRIITILDF-LQEDVEKLSNICKLSIPQILEARNRILTKFSAPVINGSCFI 378
D+VIK F++ ++D L D ++ + I + + + FS+ ING
Sbjct: 22 DNVIK--FENNGYPMIDLILFSDAYQIQRNTSIPIETVTLIQRNLQRLFSSVPINGYQHY 79
Query: 379 DKIRKGTISIKSGVKNLDNMLN-RGIPAKTITELCGIAGSGKTQLALQIAINCAKETHKT 555
+++ SG+K LD +L G + I EL G GKTQ+++ ++N +++ +
Sbjct: 80 LDVKEFKTHYSSGIKLLDQLLGGNGFTSGEIYELVGNTSCGKTQISMCCSLNLSQQYNSN 139
Query: 556 VLYIDTKGDFSALRIQKILEKCQYSFKE 639
++YID+ FS R+ +I K Y K+
Sbjct: 140 IIYIDSSNSFSPPRLIEIF-KSNYLIKQ 166
>UniRef50_A5DET9 Cluster: Putative uncharacterized protein; n=1;
Pichia guilliermondii|Rep: Putative uncharacterized
protein - Pichia guilliermondii (Yeast) (Candida
guilliermondii)
Length = 504
Score = 56.8 bits (131), Expect = 6e-07
Identities = 35/120 (29%), Positives = 67/120 (55%), Gaps = 2/120 (1%)
Frame = +1
Query: 256 LQEDVEKLSNICKLSIPQILEARNRILTKFSAPVINGSCFIDKIRKGTISIKSGVKNLDN 435
L + + +L+ S ++ E NR+ ++ + +I + T+ + +G+++LD
Sbjct: 41 LDDGISRLARKIGRSPNEVSEFTNRLKSETTRGIIETPVLEPETT--TLHVSTGIESLDQ 98
Query: 436 MLNRGIPAKTITELCGIAGSGKTQLALQIAINCAK--ETHKTVLYIDTKGDFSALRIQKI 609
LN G ITE+ G +G+GK+QL LQ++IN K E+ K+V YI T+ + R++++
Sbjct: 99 RLNGGAKVGDITEIFGASGTGKSQLLLQMSINSVKLHESSKSV-YISTESVIATSRLEEM 157
>UniRef50_Q8TUJ3 Cluster: DNA repair protein; n=6;
Euryarchaeota|Rep: DNA repair protein - Methanosarcina
acetivorans
Length = 267
Score = 56.8 bits (131), Expect = 6e-07
Identities = 27/68 (39%), Positives = 44/68 (64%)
Frame = +1
Query: 406 IKSGVKNLDNMLNRGIPAKTITELCGIAGSGKTQLALQIAINCAKETHKTVLYIDTKGDF 585
+ SG K LD +L G +T++ G AG+GKT + +Q+A+ C K+ K V++IDT+G
Sbjct: 50 LSSGCKPLDELLGGGFERGIVTQVFGAAGTGKTNICIQLAVECVKQGQK-VIFIDTEG-L 107
Query: 586 SALRIQKI 609
S +R ++I
Sbjct: 108 SPVRFKQI 115
>UniRef50_A5UKT8 Cluster: DNA repair protein, RadB; n=1;
Methanobrevibacter smithii ATCC 35061|Rep: DNA repair
protein, RadB - Methanobrevibacter smithii (strain PS /
ATCC 35061 / DSM 861)
Length = 234
Score = 56.8 bits (131), Expect = 6e-07
Identities = 26/61 (42%), Positives = 44/61 (72%)
Frame = +1
Query: 427 LDNMLNRGIPAKTITELCGIAGSGKTQLALQIAINCAKETHKTVLYIDTKGDFSALRIQK 606
+DN+L+ G+ T+T++ G GSGK+ ++L +A+N AK+ K V+Y+DT+G S RI++
Sbjct: 19 IDNLLDGGVEKGTVTQIFGPPGSGKSNISLVLAVNVAKQ-GKKVVYVDTEGGISINRIKQ 77
Query: 607 I 609
I
Sbjct: 78 I 78
>UniRef50_Q96449 Cluster: Meiotic recombination protein DMC1
homolog; n=111; Eukaryota|Rep: Meiotic recombination
protein DMC1 homolog - Glycine max (Soybean)
Length = 345
Score = 56.4 bits (130), Expect = 7e-07
Identities = 56/177 (31%), Positives = 80/177 (45%), Gaps = 8/177 (4%)
Frame = +1
Query: 211 IKMLFQSRIITILDFLQEDVEKLSNICKLS---IPQILEARNRILTKFSAPVINGSCFID 381
+K L + I T + + L+ I LS + +I EA + L F I GS +
Sbjct: 45 VKKLQDAGIYTCNGLMMHTKKNLTGIKGLSEAKVDKICEAAEK-LVNFG--YITGSDALL 101
Query: 382 KIRKGTISIKSGVKNLDNMLNRGIPAKTITELCGIAGSGKTQLALQIAINCAKETHK--- 552
K RK I I +G + LD +L G+ ITE G SGKTQLA + ++ T+
Sbjct: 102 K-RKSVIRITTGSQALDELLGGGVETSAITEAFGEFRSGKTQLAHTLCVSTQLPTNMRGG 160
Query: 553 --TVLYIDTKGDFSALRIQKILEKCQYSFKEVAAIMSRIHISYIWTMEELVNLFKNL 717
V YIDT+G F RI I E+ + A++ I + +T E NL L
Sbjct: 161 NGKVAYIDTEGTFRPDRIVPIAERFG---MDPGAVLDNIIYARAYTYEHQYNLLLGL 214
>UniRef50_UPI0000D55904 Cluster: PREDICTED: similar to Meiotic
recombination protein DMC1/LIM15 homolog; n=1; Tribolium
castaneum|Rep: PREDICTED: similar to Meiotic
recombination protein DMC1/LIM15 homolog - Tribolium
castaneum
Length = 356
Score = 55.6 bits (128), Expect = 1e-06
Identities = 44/173 (25%), Positives = 81/173 (46%), Gaps = 4/173 (2%)
Frame = +1
Query: 211 IKMLFQSRIITILDFLQEDVEKLSNICKLSIPQILEARNRILTKFSAPVINGSCFIDKIR 390
++M +++ + F V K+ IC + NR +T F ++ +C
Sbjct: 62 LQMTTTDKLLALKSFNPSKVSKIQEICGN-----ISFSNRFMTAFE---VSEAC------ 107
Query: 391 KGTISIKSGVKNLDNMLNRGIPAKTITELCGIAGSGKTQLALQIAINCAKETHK----TV 558
K I +G NLD +L G+ + +IT++ G AGSGKTQ+A + + T V
Sbjct: 108 KQVFKISTGSANLDKLLGGGVESMSITQVFGEAGSGKTQIAHTLCVTTQIPTEDYSGGKV 167
Query: 559 LYIDTKGDFSALRIQKILEKCQYSFKEVAAIMSRIHISYIWTMEELVNLFKNL 717
++IDT+ F RI++I + + E + + + ++I + E + KN+
Sbjct: 168 MFIDTERSFRPNRIRQIARR--FHLSEDSVLQNILYIR-AYNSEHQYQILKNV 217
>UniRef50_Q93YY9 Cluster: RAD51C protein; n=1; Chlamydomonas
reinhardtii|Rep: RAD51C protein - Chlamydomonas
reinhardtii
Length = 352
Score = 55.2 bits (127), Expect = 2e-06
Identities = 31/78 (39%), Positives = 42/78 (53%), Gaps = 5/78 (6%)
Frame = +1
Query: 397 TISIKSGVKNLDNMLNRGIPAKTITELCGIAGSGKTQLALQIAIN-----CAKETHKTVL 561
T I S ++LD +L G+ A +TE CG+ G GKTQL +Q+A+N +
Sbjct: 90 TPRIISMARDLDALLGGGVAAGQVTEFCGVPGVGKTQLGMQLAVNVQIPRSLSGPEGQAV 149
Query: 562 YIDTKGDFSALRIQKILE 615
YIDT+G F A R I E
Sbjct: 150 YIDTEGSFMAERCADIAE 167
>UniRef50_A0NCA9 Cluster: ENSANGP00000029732; n=2; Culicidae|Rep:
ENSANGP00000029732 - Anopheles gambiae str. PEST
Length = 290
Score = 55.2 bits (127), Expect = 2e-06
Identities = 31/82 (37%), Positives = 43/82 (52%), Gaps = 5/82 (6%)
Frame = +1
Query: 421 KNLDNMLNRGIPAKTITELCGIAGSGKTQLALQIAINC-----AKETHKTVLYIDTKGDF 585
++LD L GIP ITELCG GSGKTQL LQ+A+N +Y+DT F
Sbjct: 24 RDLDLALGSGIPEGMITELCGPPGSGKTQLCLQLAVNVQIPQQLGGLQGRAVYLDTNYGF 83
Query: 586 SALRIQKILEKCQYSFKEVAAI 651
R+Q++ + C +A +
Sbjct: 84 FPQRVQEMAKACHNHCANIALL 105
>UniRef50_UPI0000D56C94 Cluster: PREDICTED: similar to RAD51 homolog
C isoform 1; n=1; Tribolium castaneum|Rep: PREDICTED:
similar to RAD51 homolog C isoform 1 - Tribolium
castaneum
Length = 221
Score = 54.8 bits (126), Expect = 2e-06
Identities = 29/86 (33%), Positives = 52/86 (60%)
Frame = +1
Query: 406 IKSGVKNLDNMLNRGIPAKTITELCGIAGSGKTQLALQIAINCAKETHKTVLYIDTKGDF 585
+ S + LD +L++ I + +TELCG+ G+G+TQ+ L +A+ A ET ++I T +
Sbjct: 67 VTSFIPQLDCLLSKEIASGVVTELCGLPGTGRTQICLHLAVGVAGET----VFIHTNNNL 122
Query: 586 SALRIQKILEKCQYSFKEVAAIMSRI 663
S R+++I EK +V A+M ++
Sbjct: 123 SVERLKEIAEK---FVPDVGALMQKL 145
>UniRef50_Q17A54 Cluster: Spindle-b recombination protein spn-b;
n=1; Aedes aegypti|Rep: Spindle-b recombination protein
spn-b - Aedes aegypti (Yellowfever mosquito)
Length = 266
Score = 54.8 bits (126), Expect = 2e-06
Identities = 29/67 (43%), Positives = 40/67 (59%), Gaps = 2/67 (2%)
Frame = +1
Query: 406 IKSGVKNLDNMLNRGIPAKTITELCGIAGSGKTQLALQIAINCAK--ETHKTVLYIDTKG 579
IK GV LD + GI ++ I E+ G GSGKTQ+ L +A+ C ET K V+YI T+
Sbjct: 30 IKLGVDALDQLTGGGISSRGIVEIAGDPGSGKTQMCLHLALACQMQCETRKGVVYISTEH 89
Query: 580 DFSALRI 600
F + R+
Sbjct: 90 PFPSKRL 96
>UniRef50_UPI00006CB33C Cluster: hypothetical protein
TTHERM_00459230; n=1; Tetrahymena thermophila SB210|Rep:
hypothetical protein TTHERM_00459230 - Tetrahymena
thermophila SB210
Length = 356
Score = 54.0 bits (124), Expect = 4e-06
Identities = 37/101 (36%), Positives = 54/101 (53%), Gaps = 4/101 (3%)
Frame = +1
Query: 319 ARNRILTKFSAPVINGSCFIDKIRKGTISIKSGVKNLDNMLNRGIPAKTITELCGIAGSG 498
AR+ FS+ + G+ + + R I +G K LD++LN GI +++ITE G SG
Sbjct: 83 ARSENSRLFSSEFVLGTTVLQR-RSQIRRISTGSKALDDILNGGIESQSITEFYGEYRSG 141
Query: 499 KTQLALQIAINCAKETH----KTVLYIDTKGDFSALRIQKI 609
KTQ+A + + H VLYIDT+G F RI +I
Sbjct: 142 KTQIAHTACVLAQSQDHCQSPGKVLYIDTEGTFRPERICQI 182
>UniRef50_Q7RD33 Cluster: DNA repair protein rhp51; n=1; Plasmodium
yoelii yoelii|Rep: DNA repair protein rhp51 - Plasmodium
yoelii yoelii
Length = 365
Score = 54.0 bits (124), Expect = 4e-06
Identities = 51/190 (26%), Positives = 89/190 (46%), Gaps = 8/190 (4%)
Frame = +1
Query: 160 KMQKLTHVEGTALTDHVIKMLFQSRIITILDFLQEDVEKLSN---ICKLSIPQILEARNR 330
+ Q++ ++ + I L S TIL +Q ++L N I ++ + +ILE ++
Sbjct: 27 QFQEIEKLQDLGINAADINKLKGSGYCTILSLIQATKKELCNVKGISEVKVDKILEVASK 86
Query: 331 ILTKFSAPVINGSCFIDKIRKGTISIKSGVKNLDNMLNRGIPAKTITELCGIAGSGKTQL 510
I + + I G+ + K R + I +G LD L G + +ITEL G GKTQ+
Sbjct: 87 I--ENCSAFITGNQLVQK-RSKVLKITTGSSVLDKTLGGGFESMSITELFGENRCGKTQV 143
Query: 511 ALQIAINC-----AKETHKTVLYIDTKGDFSALRIQKILEKCQYSFKEVAAIMSRIHISY 675
+A+ + + V YIDT+G F +I KI ++ + ++V + I +
Sbjct: 144 CHTLAVTAQLPKSMQGGNGKVCYIDTEGTFRPEKICKIAQRFGLNSEDV---LDNILYAR 200
Query: 676 IWTMEELVNL 705
+T E L L
Sbjct: 201 AFTHEHLYQL 210
>UniRef50_Q8ZYR9 Cluster: DNA repair and recombination protein radA;
n=19; Archaea|Rep: DNA repair and recombination protein
radA - Pyrobaculum aerophilum
Length = 333
Score = 54.0 bits (124), Expect = 4e-06
Identities = 41/130 (31%), Positives = 65/130 (50%), Gaps = 7/130 (5%)
Frame = +1
Query: 241 TILDFLQEDVEKLSNIC--KLSIPQILEARNRILTKFSAPVINGSCFIDKIRKGTISIKS 414
T+ D V++L+ I + QI+EA ++L S + + + RK I +
Sbjct: 48 TVRDIAFASVKELAEIIGNEDRAQQIIEAARKMLGLHS---FISALEVYERRKKIRRIST 104
Query: 415 GVKNLDNMLNRGIPAKTITELCGIAGSGKTQLALQIAINCAKETHK-----TVLYIDTKG 579
GV++LD +L GI + +TE+ G GSGKTQL Q+A+ + +YIDT+
Sbjct: 105 GVRSLDELLGGGIETRAVTEIVGEFGSGKTQLCHQLAVMVQLPEERGGLGAKAIYIDTEN 164
Query: 580 DFSALRIQKI 609
F RI +I
Sbjct: 165 TFRPERIMQI 174
>UniRef50_Q49593 Cluster: DNA repair and recombination protein radA;
n=11; Archaea|Rep: DNA repair and recombination protein
radA - Methanococcus jannaschii
Length = 352
Score = 54.0 bits (124), Expect = 4e-06
Identities = 57/219 (26%), Positives = 97/219 (44%), Gaps = 22/219 (10%)
Frame = +1
Query: 130 NRTFMRCVLIKMQKLTHVEGTA-LTDHVIKMLFQSRIITILDFLQEDVEKLSNICKLSIP 306
N FM V+I M LT + G T +K + + I ++ ++ I + +
Sbjct: 23 NYKFMLMVII-MDDLTQLPGVGPTTAEKLKEAGYTDFMKIATASIGELTEIDGISEKAAA 81
Query: 307 QILEARNRILTKFSAPVINGSCFIDKIRKGTISIKSGVKNLDNMLNRGIPAKTITELCGI 486
+I+EA + + +G+ + + RK + +G KNLD +L G+ ++++TE G+
Sbjct: 82 RIIEAARELC---NLGFKSGTEVLSQ-RKNIWKLSTGSKNLDEILGGGLESQSVTEFAGM 137
Query: 487 AGSGKTQLALQIAIN--CAKE------------THKTVLYIDTKGDFSALRIQKILEKCQ 624
GSGKTQ+A Q +N C + +YIDT+G F RI ++ E
Sbjct: 138 FGSGKTQIAHQACVNLQCPERIVADDAIKDEILNEPKAVYIDTEGTFRPERIVQMAEALG 197
Query: 625 YSFKEV-------AAIMSRIHISYIWTMEELVNLFKNLK 720
EV A S + + Y +E L+ N+K
Sbjct: 198 LDGNEVLNNIFVARAYNSDMQMLYAENVENLIREGHNIK 236
>UniRef50_Q3LW29 Cluster: DNA recombination and repair protein; n=1;
Bigelowiella natans|Rep: DNA recombination and repair
protein - Bigelowiella natans (Pedinomonas minutissima)
(Chlorarachnion sp.(strain CCMP 621))
Length = 331
Score = 53.6 bits (123), Expect = 5e-06
Identities = 51/179 (28%), Positives = 94/179 (52%), Gaps = 10/179 (5%)
Frame = +1
Query: 127 CNRTFMRCV-LIKMQKLTHVEGTALTDHVIKMLFQSRIITILDFLQEDVEKLSNICKLS- 300
C++ R + L+++QKL ++D I+ L + I TI + ++L +I L+
Sbjct: 6 CHKASKRNIGLMELQKL------GISDLDIQKLIDNGIFTINSLAKASKKELYSIKGLND 59
Query: 301 --IPQILE-ARNRILTKFSAPVINGSCFIDKIRKGTISIKSGVKNLDNMLNRGIPAKTIT 471
+IL A+ R+ FS + N ++ K +K I + K +DN+L GI + ++T
Sbjct: 60 RKAEKILSLAKKRVPVGFST-LKN---YL-KTKKQQFHISTLNKTIDNLLEGGIESSSVT 114
Query: 472 ELCGIAGSGKTQLALQIAINCAKETH-----KTVLYIDTKGDFSALRIQKILEKCQYSF 633
E+ G + +GKTQ + ++ + + K V+YIDT+G+F R+ +I EK + +F
Sbjct: 115 EIFGESKTGKTQFCHILCVSAMVDNYSFVQTKKVIYIDTEGNFRPERLIEISEKFKINF 173
>UniRef50_Q27297 Cluster: DNA repair protein Rad51 homolog; n=12;
Fungi/Metazoa group|Rep: DNA repair protein Rad51
homolog - Drosophila melanogaster (Fruit fly)
Length = 336
Score = 53.6 bits (123), Expect = 5e-06
Identities = 44/165 (26%), Positives = 78/165 (47%), Gaps = 8/165 (4%)
Frame = +1
Query: 172 LTHVEGTALTDHVIKMLFQSRIITILDFLQEDVEKLSNICKLS---IPQILEARNRILTK 342
+T + G ++T IK+L Q+ + T+ ++L I L + QI+ N+++
Sbjct: 22 VTKLIGGSITAKDIKLLQQASLHTVESVANATKKQLMAIPGLGGGKVEQIITEANKLVP- 80
Query: 343 FSAPVINGSCFIDKIRKGTISIKSGVKNLDNMLNRGIPAKTITELCGIAGSGKTQLALQI 522
++ F ++R + + +G K LD +L GI +ITE+ G GKTQL +
Sbjct: 81 --LGFLSARTFY-QMRADVVQLSTGSKELDKLLGGGIETGSITEIFGEFRCGKTQLCHTL 137
Query: 523 AINC-----AKETHKTVLYIDTKGDFSALRIQKILEKCQYSFKEV 642
A+ C K +YIDT+ F R+ I ++ + + EV
Sbjct: 138 AVTCQLPISQKGGEGKCMYIDTENTFRPERLAAIAQRYKLNESEV 182
>UniRef50_P25453 Cluster: Meiotic recombination protein DMC1; n=39;
Eukaryota|Rep: Meiotic recombination protein DMC1 -
Saccharomyces cerevisiae (Baker's yeast)
Length = 334
Score = 53.2 bits (122), Expect = 7e-06
Identities = 40/130 (30%), Positives = 67/130 (51%), Gaps = 5/130 (3%)
Frame = +1
Query: 241 TILDFLQEDVEKLSNICKLSIPQILEARNRILTKFSAPVINGSCFIDKIRKGTISIKSGV 420
T+L + + K+ + ++ + +I EA +I+ I + +D IR+ S+ +G
Sbjct: 45 TVLSTTRRHLCKIKGLSEVKVEKIKEAAGKII---QVGFIPATVQLD-IRQRVYSLSTGS 100
Query: 421 KNLDNMLNRGIPAKTITELCGIAGSGKTQLA--LQIAINCAKET---HKTVLYIDTKGDF 585
K LD++L GI +ITE+ G GKTQ++ L + +E V YIDT+G F
Sbjct: 101 KQLDSILGGGIMTMSITEVFGEFRCGKTQMSHTLCVTTQLPREMGGGEGKVAYIDTEGTF 160
Query: 586 SALRIQKILE 615
RI++I E
Sbjct: 161 RPERIKQIAE 170
>UniRef50_Q55075 Cluster: DNA repair and recombination protein radA;
n=12; Archaea|Rep: DNA repair and recombination protein
radA - Sulfolobus solfataricus
Length = 324
Score = 52.4 bits (120), Expect = 1e-05
Identities = 38/127 (29%), Positives = 63/127 (49%), Gaps = 12/127 (9%)
Frame = +1
Query: 376 IDKIRKGTISIKSGVKNLDNMLNRGIPAKTITELCGIAGSGKTQLALQIAINCAKETHK- 552
+ K R I +G + LD +L GI +T+TE G GSGKTQL Q+++N K
Sbjct: 79 VKKERMNVKKISTGSQALDGLLAGGIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKG 138
Query: 553 ----TVLYIDTKGDFSALRIQKI-------LEKCQYSFKEVAAIMSRIHISYIWTMEELV 699
+YIDT+G F RI+ + ++ + + AI + I+ + ++ELV
Sbjct: 139 GLSGKAVYIDTEGTFRWERIENMAKALGLDIDNVMNNIYYIRAINTDHQIAIVDDLQELV 198
Query: 700 NLFKNLK 720
+ ++K
Sbjct: 199 SKDPSIK 205
>UniRef50_Q4Q3T8 Cluster: Recombinase Rad51, putative; n=3;
Leishmania|Rep: Recombinase Rad51, putative - Leishmania
major
Length = 687
Score = 52.0 bits (119), Expect = 2e-05
Identities = 25/66 (37%), Positives = 40/66 (60%), Gaps = 5/66 (7%)
Frame = +1
Query: 427 LDNMLNRGIPAKTITELCGIAGSGKTQLALQIAINCAKETH-----KTVLYIDTKGDFSA 591
LD +L G+P +TE+ G G GKTQL +Q+A++CA L++DT+G F A
Sbjct: 229 LDGVLGGGVPVGGVTEISGPPGVGKTQLLMQLAVSCAMPVEFGGMGGACLFVDTEGSFVA 288
Query: 592 LRIQKI 609
R++++
Sbjct: 289 ERLEQM 294
>UniRef50_Q8TWK1 Cluster: RadA recombinase; n=1; Methanopyrus
kandleri|Rep: RadA recombinase - Methanopyrus kandleri
Length = 316
Score = 52.0 bits (119), Expect = 2e-05
Identities = 35/108 (32%), Positives = 55/108 (50%)
Frame = +1
Query: 406 IKSGVKNLDNMLNRGIPAKTITELCGIAGSGKTQLALQIAINCAKETHKTVLYIDTKGDF 585
I +G++ D + G+P I + G G+GK+Q A Q+A + KE ++VLYIDT+
Sbjct: 89 IPTGIQGFDERMGGGLPTGVIVGMYGPPGAGKSQFATQVAAHALKE-GESVLYIDTE--- 144
Query: 586 SALRIQKILEKCQYSFKEVAAIMSRIHISYIWTMEELVNLFKNLKNGE 729
+A R Q++LE + E+ + R + I L F K GE
Sbjct: 145 NAFRPQRLLEIGGFKKDELKEVSDRFVLRRIIDAAALRQYFDE-KEGE 191
>UniRef50_Q2IEE4 Cluster: Protein recA; n=1; Anaeromyxobacter
dehalogenans 2CP-C|Rep: Protein recA - Anaeromyxobacter
dehalogenans (strain 2CP-C)
Length = 494
Score = 51.6 bits (118), Expect = 2e-05
Identities = 27/56 (48%), Positives = 37/56 (66%)
Frame = +1
Query: 406 IKSGVKNLDNMLNRGIPAKTITELCGIAGSGKTQLALQIAINCAKETHKTVLYIDT 573
+ +GV+ LD +L GIPAK+IT + G GSGKT LALQ+ + A++ K LY T
Sbjct: 13 VSTGVEGLDQVLGGGIPAKSITVVSGEPGSGKTVLALQMLFHAARQ-GKRSLYFTT 67
Score = 36.7 bits (81), Expect = 0.65
Identities = 18/53 (33%), Positives = 28/53 (52%)
Frame = +1
Query: 406 IKSGVKNLDNMLNRGIPAKTITELCGIAGSGKTQLALQIAINCAKETHKTVLY 564
+ +GV LD + + GIP + T + G G+GKT L L + A+ VL+
Sbjct: 252 LSTGVAQLDALFHGGIPPASSTTVMGGTGTGKTLLGLHFLVEGARRGEPGVLF 304
>UniRef50_UPI0000F2B25B Cluster: PREDICTED: similar to RAD51-like 1
(S. cerevisiae),; n=1; Monodelphis domestica|Rep:
PREDICTED: similar to RAD51-like 1 (S. cerevisiae), -
Monodelphis domestica
Length = 396
Score = 51.2 bits (117), Expect = 3e-05
Identities = 48/197 (24%), Positives = 97/197 (49%), Gaps = 12/197 (6%)
Frame = +1
Query: 166 QKLTHVEGTALTDHVIKMLFQSRIITILDFLQEDVEKLSNICKLSIPQILEARNRILTKF 345
+KLT + L+ + L + +++T DFL +L + S + E ++++
Sbjct: 4 KKLTRI---GLSQDLCDRLSRHQVVTCQDFLCLSPLELMKVTGQSYQGVSELLY-VVSRA 59
Query: 346 SAPVINGSCFIDKIRKGTIS---IKSGVKNLDNMLNRGIPAKTITELCGIAGSGKTQLAL 516
AP + + + + G S + + + +LD L+ G+ ++TE+ G +G GKTQ +
Sbjct: 60 CAPQMQTAYEMKLEKSGGPSSAFLATTLISLDEALHGGVACGSLTEITGPSGCGKTQFCM 119
Query: 517 QIAINCAKET-----HKTVLYIDTKGDFSALRIQKILEKCQYSF----KEVAAIMSRIHI 669
+++ T V+YIDT+ FSA R+ +I E SF +++ ++ S+IH+
Sbjct: 120 MMSVLATLPTGMGGLEGAVIYIDTESAFSAERLIRIAEFRFPSFFNTEEKLLSMSSKIHL 179
Query: 670 SYIWTMEELVNLFKNLK 720
T E++ ++L+
Sbjct: 180 YKELTCNEVLKRIESLE 196
>UniRef50_A1Z7R8 Cluster: CG2412-PA; n=3; Sophophora|Rep: CG2412-PA
- Drosophila melanogaster (Fruit fly)
Length = 184
Score = 51.2 bits (117), Expect = 3e-05
Identities = 29/83 (34%), Positives = 44/83 (53%)
Frame = +1
Query: 466 ITELCGIAGSGKTQLALQIAINCAKETHKTVLYIDTKGDFSALRIQKILEKCQYSFKEVA 645
+ ELCG G GKTQL +A+N + + VL+IDTK +FS RIQ +L + +
Sbjct: 23 VWELCGQPGVGKTQLLYTLALNFVWKHSQAVLFIDTKREFSCKRIQDMLRAREVDEEASE 82
Query: 646 AIMSRIHISYIWTMEELVNLFKN 714
M I + T ++ +L K+
Sbjct: 83 RAMKGIRVVQAATGADINDLLKS 105
>UniRef50_A3LTU6 Cluster: Predicted protein; n=1; Pichia
stipitis|Rep: Predicted protein - Pichia stipitis
(Yeast)
Length = 541
Score = 51.2 bits (117), Expect = 3e-05
Identities = 32/106 (30%), Positives = 56/106 (52%), Gaps = 2/106 (1%)
Frame = +1
Query: 379 DKIRKGTISIKSGVKNLDNMLNRGIPAKTITELCGIAGSGKTQLALQIAINCA--KETHK 552
D I+ + I +G+ LD+ L GIP ITE+ G +G GK+ + Q+A+ C + K
Sbjct: 79 DMIKSPSKFISTGLHTLDSDLGGGIPTGEITEIFGSSGCGKSHMLAQLAMECQLNEGDCK 138
Query: 553 TVLYIDTKGDFSALRIQKILEKCQYSFKEVAAIMSRIHISYIWTME 690
++I T+ R+ +I Q S++ + +S +ISYI+ +
Sbjct: 139 ECIHIGTESFLETKRLHQI----QQSYESKGSTVSLDNISYIYCQD 180
>UniRef50_O15315 Cluster: DNA repair protein RAD51 homolog 2; n=27;
Deuterostomia|Rep: DNA repair protein RAD51 homolog 2 -
Homo sapiens (Human)
Length = 384
Score = 51.2 bits (117), Expect = 3e-05
Identities = 48/187 (25%), Positives = 89/187 (47%), Gaps = 12/187 (6%)
Frame = +1
Query: 196 LTDHVIKMLFQSRIITILDFLQEDVEKLSNICKLSIPQILEARNRILTKFSAPVINGSCF 375
L+ + L + +I+T DFL +L + LS + E + ++ AP + +
Sbjct: 11 LSQELCDRLSRHQILTCQDFLCLSPLELMKVTGLSYRGVHELLCMV-SRACAPKMQTAYG 69
Query: 376 IDKIRKGTIS---IKSGVKNLDNMLNRGIPAKTITELCGIAGSGKTQLALQIAINCAKET 546
I R S + + + LD L+ G+ ++TE+ G G GKTQ + ++I T
Sbjct: 70 IKAQRSADFSPAFLSTTLSALDEALHGGVACGSLTEITGPPGCGKTQFCIMMSILATLPT 129
Query: 547 HK-----TVLYIDTKGDFSALRIQKILEK--CQYSFKEVAAIM--SRIHISYIWTMEELV 699
+ V+YIDT+ FSA R+ +I E +Y E ++ S++H+ T +E++
Sbjct: 130 NMGGLEGAVVYIDTESAFSAERLVEIAESRFPRYFNTEEKLLLTSSKVHLYRELTCDEVL 189
Query: 700 NLFKNLK 720
++L+
Sbjct: 190 QRIESLE 196
>UniRef50_UPI0000E249BA Cluster: PREDICTED: RAD51 homolog C; n=1;
Pan troglodytes|Rep: PREDICTED: RAD51 homolog C - Pan
troglodytes
Length = 461
Score = 50.8 bits (116), Expect = 4e-05
Identities = 25/70 (35%), Positives = 38/70 (54%), Gaps = 5/70 (7%)
Frame = +1
Query: 427 LDNMLNRGIPAKTITELCGIAGSGKTQLALQIAIN-----CAKETHKTVLYIDTKGDFSA 591
LD++L G+P TE+CG G GKTQL +Q+A++ C ++IDT+G F
Sbjct: 152 LDDILGGGVPLMKTTEICGAPGVGKTQLCMQLAVDVQIPECFGGVAGEAVFIDTEGSFMV 211
Query: 592 LRIQKILEKC 621
R+ + C
Sbjct: 212 DRVVDLATAC 221
>UniRef50_Q5JDP8 Cluster: ATPase, RecA superfamily; n=1;
Thermococcus kodakarensis KOD1|Rep: ATPase, RecA
superfamily - Pyrococcus kodakaraensis (Thermococcus
kodakaraensis)
Length = 448
Score = 50.8 bits (116), Expect = 4e-05
Identities = 36/101 (35%), Positives = 58/101 (57%), Gaps = 3/101 (2%)
Frame = +1
Query: 406 IKSGVKNLDNMLNRGIPAKTITELCGIAGSGKTQLALQIAINCAKETHKTVLYIDTKGDF 585
+K+G+ LD +L G+ +IT + G GSGKT LAL +A N +K + K VLYI +
Sbjct: 238 LKTGILGLDELLGGGLYEGSITLIAGPTGSGKTILALNLASNLSK-SGKKVLYIAYEESL 296
Query: 586 SALRIQKILEK--CQYSFKEVAAI-MSRIHISYIWTMEELV 699
+ALR LEK + +F+ V+ + R + Y +++L+
Sbjct: 297 AALR--DTLEKLGLEENFRIVSMVPEGRTPVEYYALIKDLI 335
>UniRef50_O27728 Cluster: DNA repair and recombination protein radB;
n=1; Methanothermobacter thermautotrophicus str. Delta
H|Rep: DNA repair and recombination protein radB -
Methanobacterium thermoautotrophicum
Length = 234
Score = 50.8 bits (116), Expect = 4e-05
Identities = 23/62 (37%), Positives = 40/62 (64%)
Frame = +1
Query: 424 NLDNMLNRGIPAKTITELCGIAGSGKTQLALQIAINCAKETHKTVLYIDTKGDFSALRIQ 603
++D +L G+ +TIT+ G GSGKT + +++A+ A+ TV +IDT+G S RI+
Sbjct: 18 SIDRILGGGVERRTITQFYGPPGSGKTNITIKLAVETARRGKNTV-FIDTEGGLSVERIR 76
Query: 604 KI 609
++
Sbjct: 77 QV 78
>UniRef50_O43502 Cluster: DNA repair protein RAD51 homolog 3; n=32;
Euteleostomi|Rep: DNA repair protein RAD51 homolog 3 -
Homo sapiens (Human)
Length = 376
Score = 50.8 bits (116), Expect = 4e-05
Identities = 25/70 (35%), Positives = 38/70 (54%), Gaps = 5/70 (7%)
Frame = +1
Query: 427 LDNMLNRGIPAKTITELCGIAGSGKTQLALQIAIN-----CAKETHKTVLYIDTKGDFSA 591
LD++L G+P TE+CG G GKTQL +Q+A++ C ++IDT+G F
Sbjct: 107 LDDILGGGVPLMKTTEICGAPGVGKTQLCMQLAVDVQIPECFGGVAGEAVFIDTEGSFMV 166
Query: 592 LRIQKILEKC 621
R+ + C
Sbjct: 167 DRVVDLATAC 176
>UniRef50_Q69KV4 Cluster: Trad-like protein; n=3; Oryza sativa|Rep:
Trad-like protein - Oryza sativa subsp. japonica (Rice)
Length = 272
Score = 50.4 bits (115), Expect = 5e-05
Identities = 29/90 (32%), Positives = 50/90 (55%), Gaps = 6/90 (6%)
Frame = +1
Query: 364 GSCFIDK---IRKGTIS---IKSGVKNLDNMLNRGIPAKTITELCGIAGSGKTQLALQIA 525
G CF+D ++ T + + +G++ +D +L G+ +TE+ G + SGKTQ+ L A
Sbjct: 30 GQCFLDGMDLLKDATENKRFLPTGLQGVDALLGGGLRQGQLTEITGQSSSGKTQVCLCSA 89
Query: 526 INCAKETHKTVLYIDTKGDFSALRIQKILE 615
+ A V+Y+DT FS RI +I++
Sbjct: 90 SHVAARQLGVVMYLDTSNSFSPSRIARIVD 119
>UniRef50_Q6CMV0 Cluster: Similar to sp|P25301 Saccharomyces
cerevisiae YDR004w RAD57 DNA repair protein; n=1;
Kluyveromyces lactis|Rep: Similar to sp|P25301
Saccharomyces cerevisiae YDR004w RAD57 DNA repair
protein - Kluyveromyces lactis (Yeast) (Candida
sphaerica)
Length = 480
Score = 50.4 bits (115), Expect = 5e-05
Identities = 39/135 (28%), Positives = 66/135 (48%), Gaps = 8/135 (5%)
Frame = +1
Query: 238 ITILDFLQEDVEKLSNICKLSIPQILEARNRILTKFSAPVINGSCF-IDKIRKGTIS--I 408
IT LDFL + L SI +I++ + + +F + + I +++
Sbjct: 30 ITCLDFLSQSPSNLMKTINRSINEIIKFQAALRNEFELALADIKIQDITTLKEDDKPRCF 89
Query: 409 KSGVKNLDNMLNRGIPAKTITELCGIAGSGKTQLALQIAINCAKETHKTVL-----YIDT 573
+G LD +L GI +K ITE+ G + +GK+QL LQ+A++ L YI T
Sbjct: 90 TTGNLGLDKLLGGGIYSKGITEIFGESSTGKSQLLLQLALSVQLPEDMNGLNGQSVYITT 149
Query: 574 KGDFSALRIQKILEK 618
+GD R++ I+E+
Sbjct: 150 EGDLPTRRLKSIIEQ 164
>UniRef50_A5DYZ1 Cluster: Putative uncharacterized protein; n=1;
Lodderomyces elongisporus NRRL YB-4239|Rep: Putative
uncharacterized protein - Lodderomyces elongisporus
(Yeast) (Saccharomyces elongisporus)
Length = 711
Score = 50.0 bits (114), Expect = 6e-05
Identities = 37/143 (25%), Positives = 70/143 (48%), Gaps = 6/143 (4%)
Frame = +1
Query: 271 EKLSNICKLSIPQILEARNRILTKFSAPVIN-GSCFIDKIRKGTIS----IKSGVKNLDN 435
++L+ + + +I + + + P N + F D + G I I +G+ +LD
Sbjct: 151 QELAKLLSRPVREIKDYIRSLNEDLAVPPSNIDNLFGDNLNDGDIDYENHISTGLPDLDE 210
Query: 436 MLNRGIPAKTITELCGIAGSGKTQLALQIAINCAKETHK-TVLYIDTKGDFSALRIQKIL 612
L GIP ++E+ G +G GK+Q QI N + K TV+++ T+ + R++ I
Sbjct: 211 QLGGGIPIGEVSEVFGASGCGKSQFVYQIIHNSILQGAKNTVVHVATESFMESKRLKDIF 270
Query: 613 EKCQYSFKEVAAIMSRIHISYIW 681
E S +++ + R +SYI+
Sbjct: 271 ESDSSSSSSLSSKLDR--MSYIY 291
>UniRef50_Q2FSR3 Cluster: ATPase; n=4; Methanomicrobiales|Rep:
ATPase - Methanospirillum hungatei (strain JF-1 / DSM
864)
Length = 234
Score = 50.0 bits (114), Expect = 6e-05
Identities = 27/68 (39%), Positives = 42/68 (61%)
Frame = +1
Query: 406 IKSGVKNLDNMLNRGIPAKTITELCGIAGSGKTQLALQIAINCAKETHKTVLYIDTKGDF 585
+ SG LD+++ G P K IT++ G GSGK+ L L A++ K+ ++V+Y DT+ F
Sbjct: 6 VSSGNAALDDLMGTGYPRKMITQIFGEPGSGKSSLCLMAAVSVLKQ-GESVVYFDTE-SF 63
Query: 586 SALRIQKI 609
SA R +I
Sbjct: 64 SAERFSQI 71
>UniRef50_A1RY65 Cluster: Rad51-like; n=1; Thermofilum pendens Hrk
5|Rep: Rad51-like - Thermofilum pendens (strain Hrk 5)
Length = 250
Score = 50.0 bits (114), Expect = 6e-05
Identities = 28/81 (34%), Positives = 47/81 (58%), Gaps = 5/81 (6%)
Frame = +1
Query: 382 KIRKGTISIKSGVKNLDNMLNRGIPAKTITELCGIAGSGKTQLA--LQIAINCAKE---T 546
++ + + I +GV++LD++L GI +ITE G G+GKTQ+ L + + K+
Sbjct: 22 RVYEESARISTGVRSLDDLLEGGIEVGSITEFIGEFGAGKTQICHQLSVMVQLPKDKGGL 81
Query: 547 HKTVLYIDTKGDFSALRIQKI 609
+ LY+DT+G F RI +I
Sbjct: 82 NARALYVDTEGTFRPERIVQI 102
>UniRef50_P25454 Cluster: DNA repair protein RAD51; n=111;
Eukaryota|Rep: DNA repair protein RAD51 - Saccharomyces
cerevisiae (Baker's yeast)
Length = 400
Score = 50.0 bits (114), Expect = 6e-05
Identities = 29/82 (35%), Positives = 43/82 (52%), Gaps = 5/82 (6%)
Frame = +1
Query: 388 RKGTISIKSGVKNLDNMLNRGIPAKTITELCGIAGSGKTQLALQIAINCAKET-----HK 552
R I + +G KNLD +L G+ +ITEL G +GK+QL +A+ C
Sbjct: 154 RSELICLTTGSKNLDTLLGGGVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEG 213
Query: 553 TVLYIDTKGDFSALRIQKILEK 618
LYIDT+G F +R+ I ++
Sbjct: 214 KCLYIDTEGTFRPVRLVSIAQR 235
>UniRef50_Q06609 Cluster: DNA repair protein RAD51 homolog 1; n=22;
Eukaryota|Rep: DNA repair protein RAD51 homolog 1 - Homo
sapiens (Human)
Length = 339
Score = 50.0 bits (114), Expect = 6e-05
Identities = 30/90 (33%), Positives = 45/90 (50%), Gaps = 5/90 (5%)
Frame = +1
Query: 388 RKGTISIKSGVKNLDNMLNRGIPAKTITELCGIAGSGKTQLALQIAINCAKETHK----- 552
R I I +G K LD +L GI +ITE+ G +GKTQ+ +A+ C +
Sbjct: 96 RSEIIQITTGSKELDKLLQGGIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEG 155
Query: 553 TVLYIDTKGDFSALRIQKILEKCQYSFKEV 642
+YIDT+G F R+ + E+ S +V
Sbjct: 156 KAMYIDTEGTFRPERLLAVAERYGLSGSDV 185
>UniRef50_Q6Q241 Cluster: Putative Rad51B protein; n=1;
Chlamydomonas reinhardtii|Rep: Putative Rad51B protein -
Chlamydomonas reinhardtii
Length = 392
Score = 49.6 bits (113), Expect = 9e-05
Identities = 28/74 (37%), Positives = 44/74 (59%), Gaps = 5/74 (6%)
Frame = +1
Query: 406 IKSGVKNLDNMLNRGIPAKTITELCGIAGSGKTQLALQIAINCAKE-----THKTVLYID 570
+++G+ LD L G+P +ITEL G G GK+QL+ +A+ A V+YID
Sbjct: 83 LRTGLPTLDGALRLGVPVGSITELVGPGGVGKSQLSHMLALAVAMPEALGGLGAGVVYID 142
Query: 571 TKGDFSALRIQKIL 612
T+ FSA R+Q+++
Sbjct: 143 TERKFSAPRLQEMV 156
>UniRef50_Q8SZF1 Cluster: RE02671p; n=3; Sophophora|Rep: RE02671p -
Drosophila melanogaster (Fruit fly)
Length = 341
Score = 49.6 bits (113), Expect = 9e-05
Identities = 39/137 (28%), Positives = 59/137 (43%), Gaps = 7/137 (5%)
Frame = +1
Query: 253 FLQEDVEKLSNICKLSIPQILEARNRILTKFSA--PVINGSCFIDKIRKGTISIKSGVKN 426
FL + L I + P + K+ A P S F + + G
Sbjct: 35 FLDTRQQSLHTIVRKCTPDDVRVLKDAAAKWLAEMPQSADSLFKPLVNVRWSRVSFGCSA 94
Query: 427 LDNMLNRGIPAKTITELCGIAGSGKTQLALQIA--INCAKE---THKTVLYIDTKGDFSA 591
LD G+ + ITELCG AG GKT+L LQ++ + +E K V YI T+ F A
Sbjct: 95 LDRCTGGGVVTRGITELCGAAGVGKTELLLQLSLCVQLPRELGGLGKGVAYICTESSFPA 154
Query: 592 LRIQKILEKCQYSFKEV 642
R+ ++ + C+ E+
Sbjct: 155 RRLLQMSKACEKRHPEM 171
>UniRef50_Q2NHD1 Cluster: RadB; n=1; Methanosphaera stadtmanae DSM
3091|Rep: RadB - Methanosphaera stadtmanae (strain DSM
3091)
Length = 232
Score = 49.6 bits (113), Expect = 9e-05
Identities = 27/62 (43%), Positives = 36/62 (58%)
Frame = +1
Query: 424 NLDNMLNRGIPAKTITELCGIAGSGKTQLALQIAINCAKETHKTVLYIDTKGDFSALRIQ 603
+LD +L GI IT+ G GSGKT +AL+I K K + Y+DT+G S RIQ
Sbjct: 18 SLDKLLGGGIEKGCITQFYGPPGSGKTNIALKILYEATKNGSKAI-YMDTEGGLSLERIQ 76
Query: 604 KI 609
+I
Sbjct: 77 QI 78
>UniRef50_O50248 Cluster: DNA repair and recombination protein radB;
n=6; Methanococcales|Rep: DNA repair and recombination
protein radB - Methanococcus maripaludis
Length = 216
Score = 49.6 bits (113), Expect = 9e-05
Identities = 29/73 (39%), Positives = 43/73 (58%), Gaps = 1/73 (1%)
Frame = +1
Query: 427 LDNMLNRGIPAKTITELCGIAGSGKTQLALQIAINCAKETHKTVLYIDTKGDFSALRIQK 606
L+ +LN I KTIT++ G G GKT + + I++ A E K V+YIDT+G S RI++
Sbjct: 2 LEELLNGNIEKKTITQIYGPPGVGKTNICI-ISMLKAIENGKNVVYIDTEGSLSIERIKQ 60
Query: 607 ILEK-CQYSFKEV 642
+ K C K +
Sbjct: 61 LSGKDCDELLKNI 73
>UniRef50_O28184 Cluster: DNA repair and recombination protein radB;
n=1; Archaeoglobus fulgidus|Rep: DNA repair and
recombination protein radB - Archaeoglobus fulgidus
Length = 221
Score = 49.6 bits (113), Expect = 9e-05
Identities = 27/68 (39%), Positives = 43/68 (63%)
Frame = +1
Query: 406 IKSGVKNLDNMLNRGIPAKTITELCGIAGSGKTQLALQIAINCAKETHKTVLYIDTKGDF 585
I +G K +D++L G+ T+T++ G G+GKT L L +A N A++ V YIDT+G
Sbjct: 6 IPTGSKCIDSLLGGGVETGTVTQIYGHGGTGKTTLCLMLAKNAAEQF--KVAYIDTEG-L 62
Query: 586 SALRIQKI 609
S R+++I
Sbjct: 63 SGERVRQI 70
>UniRef50_UPI0000DB74C1 Cluster: PREDICTED: similar to DNA-repair
protein XRCC3 (X-ray repair cross-complementing protein
3); n=1; Apis mellifera|Rep: PREDICTED: similar to
DNA-repair protein XRCC3 (X-ray repair
cross-complementing protein 3) - Apis mellifera
Length = 169
Score = 49.2 bits (112), Expect = 1e-04
Identities = 31/102 (30%), Positives = 56/102 (54%), Gaps = 5/102 (4%)
Frame = +1
Query: 406 IKSGVKNLDNMLNRGIPAKTITELCGIAGSGKTQLALQIAINC-AKETH----KTVLYID 570
+ +G D +L GI + IT++ G A +GKTQLALQ+ + +T +YI
Sbjct: 18 LTTGCSKFDTLLQGGITNRGITQIYGAASTGKTQLALQLCLTVQLPKTEGGLAAGAIYIC 77
Query: 571 TKGDFSALRIQKILEKCQYSFKEVAAIMSRIHISYIWTMEEL 696
T+ F + R+Q++++K + + K+ + + +I T+EEL
Sbjct: 78 TESIFPSRRLQELIQKLEIT-KKHGINGDLVFVEHISTIEEL 118
>UniRef50_A4S5M9 Cluster: Predicted protein; n=2; Ostreococcus|Rep:
Predicted protein - Ostreococcus lucimarinus CCE9901
Length = 288
Score = 48.8 bits (111), Expect = 1e-04
Identities = 31/93 (33%), Positives = 51/93 (54%)
Frame = +1
Query: 331 ILTKFSAPVINGSCFIDKIRKGTISIKSGVKNLDNMLNRGIPAKTITELCGIAGSGKTQL 510
I + A +NGS ++ I + +G +D +L G+ + E+ G + SGKTQL
Sbjct: 17 IYNETCANAVNGSDVERQLSLLEI-LPTGCDAIDELLGGGLRQGQLIEITGPSASGKTQL 75
Query: 511 ALQIAINCAKETHKTVLYIDTKGDFSALRIQKI 609
L A + A ++ V+Y+DT G FSA RI+++
Sbjct: 76 CLSAAASFAALDNR-VVYVDTTGGFSATRIKQL 107
>UniRef50_A4S2Y8 Cluster: Predicted protein; n=1; Ostreococcus
lucimarinus CCE9901|Rep: Predicted protein -
Ostreococcus lucimarinus CCE9901
Length = 351
Score = 48.8 bits (111), Expect = 1e-04
Identities = 37/151 (24%), Positives = 72/151 (47%), Gaps = 6/151 (3%)
Frame = +1
Query: 283 NICKLSIPQILEARNRILTKFSAPVINGSCFIDKIRKGTISIKSGVKNLDNMLNRGIPAK 462
++ +L+ + AR I++ A + +D +R+ + ++++D L G+
Sbjct: 40 DVVELADVSMHRARQFIISVAKAVAPTPTTALDALRRSQY-VPLVIEDVDKALGGGLRVG 98
Query: 463 TITELCGIAGSGKTQLALQIAINCAKETH-----KTVLYIDTKGDFSALRIQKIL-EKCQ 624
+TE+ G AG+GKTQL L + A V+Y+D + FS R+ +I EK
Sbjct: 99 AVTEVVGAAGAGKTQLCLAACASAAAPARVGGRDGGVIYVDAERKFSGARLAEIAREKFP 158
Query: 625 YSFKEVAAIMSRIHISYIWTMEELVNLFKNL 717
+F++ ++ + ++ T L +L K L
Sbjct: 159 GAFEDEESVHALARRVHVVTPTSLTDLNKRL 189
>UniRef50_Q8PZN5 Cluster: DNA repair and recombination protein radA;
n=21; Archaea|Rep: DNA repair and recombination protein
radA - Methanosarcina mazei (Methanosarcina frisia)
Length = 325
Score = 48.4 bits (110), Expect = 2e-04
Identities = 29/80 (36%), Positives = 43/80 (53%), Gaps = 5/80 (6%)
Frame = +1
Query: 388 RKGTISIKSGVKNLDNMLNRGIPAKTITELCGIAGSGKTQLALQIAINCAKETHK----- 552
RK + +G D M+ GI + ITEL G GSGKTQ+A Q+A+N +
Sbjct: 76 RKLVGKLTTGCTEFDEMMGGGIETQAITELYGEFGSGKTQVAHQLAVNVQMDREHGGLGG 135
Query: 553 TVLYIDTKGDFSALRIQKIL 612
+V+ IDT+ F RI +++
Sbjct: 136 SVIIIDTENTFRPERITQMV 155
>UniRef50_O61128 Cluster: Dmc1 homolog; n=11; Eukaryota|Rep: Dmc1
homolog - Leishmania major
Length = 364
Score = 48.0 bits (109), Expect = 3e-04
Identities = 34/126 (26%), Positives = 63/126 (50%), Gaps = 6/126 (4%)
Frame = +1
Query: 259 QEDVEKLSNICKLSIPQILEARNRILTKFSAPVINGSCFIDKIRKGTISIKSGVKNLDNM 438
++D+ ++ + + + +I+EA R+ I GS + + R + I +G LD +
Sbjct: 81 RKDLIQIKGLSEAKVDKIIEAARRVS---EVGFITGSSCLQQ-RSTLLRISTGSTALDQL 136
Query: 439 LNRG-IPAKTITELCGIAGSGKTQLALQIAINCAKET-----HKTVLYIDTKGDFSALRI 600
L G I +++ITE G +GKTQ+ + + C + +Y+DT+G F RI
Sbjct: 137 LGGGGIESRSITEAFGEFRTGKTQIGHTLCVTCQLPLEMGGGNGKAVYVDTEGTFRPERI 196
Query: 601 QKILEK 618
+ I E+
Sbjct: 197 RPIAER 202
>UniRef50_Q9SK02 Cluster: DNA repair protein RAD51 homolog 2; n=6;
Magnoliophyta|Rep: DNA repair protein RAD51 homolog 2 -
Arabidopsis thaliana (Mouse-ear cress)
Length = 370
Score = 48.0 bits (109), Expect = 3e-04
Identities = 43/153 (28%), Positives = 75/153 (49%), Gaps = 9/153 (5%)
Frame = +1
Query: 211 IKMLFQSR-IITILDFLQEDVEKLSNICKLSIPQILEARNRILTKFSAPVINGSCFIDK- 384
I +F +R IIT D L +L + + + +I A + I S P + ++K
Sbjct: 15 ISNIFAARNIITAKDALSMTEFELMELLDVGMKEIRSAISFISEATSPPCQSARSLLEKK 74
Query: 385 IRKGTIS--IKSGVKNLDNMLNRGIPAKTITELCGIAGSGKTQLALQIAINCAKET---- 546
+ +S + + +K LD+ L GIP +TEL G G GK+Q +++A++ +
Sbjct: 75 VENEHLSGHLPTHLKGLDDTLCGGIPFGVLTELVGPPGIGKSQFCMKLALSASFPVAYGG 134
Query: 547 -HKTVLYIDTKGDFSALRIQKILEKCQYSFKEV 642
V+YID + FS+ ++++E SF EV
Sbjct: 135 LDGRVIYIDVESKFSS---RRVIEMGLESFPEV 164
>UniRef50_UPI0000499144 Cluster: DNA repair protein RAD51C; n=1;
Entamoeba histolytica HM-1:IMSS|Rep: DNA repair protein
RAD51C - Entamoeba histolytica HM-1:IMSS
Length = 283
Score = 47.6 bits (108), Expect = 3e-04
Identities = 30/92 (32%), Positives = 46/92 (50%), Gaps = 9/92 (9%)
Frame = +1
Query: 421 KNLDNMLNRGIPAKTITELCGIAGSGKTQLALQIAINCAKE-----THKTVLYIDTKGDF 585
+ +D LN GI IT++ G GSGK+QL +QIA N + +Y D+ F
Sbjct: 45 QEIDQFLNGGISLGEITQIVGFPGSGKSQLCMQIACNVQLPEEIGGLNSESIYYDSYSQF 104
Query: 586 SALRIQKILEKCQYSFKE----VAAIMSRIHI 669
R+Q++ E S+ E V I+ +IH+
Sbjct: 105 CISRVQRMAECICASYPEYKLNVKEILEKIHV 136
>UniRef50_Q8SZ30 Cluster: RE19845p; n=2; Sophophora|Rep: RE19845p -
Drosophila melanogaster (Fruit fly)
Length = 270
Score = 47.6 bits (108), Expect = 3e-04
Identities = 34/117 (29%), Positives = 58/117 (49%), Gaps = 5/117 (4%)
Frame = +1
Query: 298 SIPQILEARNRILTKFSAPVINGSCFIDKIRKGTISIKSGVKNLDNMLNRGIPAKTITEL 477
S P+ +E R + + + + + SC+ D + + I +G K LD GI + EL
Sbjct: 12 SQPEAIERRPSVSHE-NFRIFDKSCW-DISQSASNKILTGKKALDTHFGGGISLGHLVEL 69
Query: 478 CGIAGSGKTQLALQIAIN-----CAKETHKTVLYIDTKGDFSALRIQKILEKCQYSF 633
G +G+GKTQ+ LQ+ +N A + L+IDT+ DF R+ + K + +
Sbjct: 70 IGNSGTGKTQMCLQLCLNVQIPKAAGGLEGSALFIDTRQDFHPDRLMGLALKLERQY 126
>UniRef50_Q6BWA8 Cluster: Similar to sp|P25301 Saccharomyces
cerevisiae YDR004w RAD57 DNA repair protein; n=1;
Debaryomyces hansenii|Rep: Similar to sp|P25301
Saccharomyces cerevisiae YDR004w RAD57 DNA repair
protein - Debaryomyces hansenii (Yeast) (Torulaspora
hansenii)
Length = 569
Score = 47.6 bits (108), Expect = 3e-04
Identities = 31/99 (31%), Positives = 49/99 (49%), Gaps = 4/99 (4%)
Frame = +1
Query: 406 IKSGVKNLDNMLNRGIPAKTITELCGIAGSGKTQLALQIAIN---CAKETHKTVLYIDTK 576
I +G++ LD LN GIP ITE+ G +G GK+QL LQ+ I + +YI T+
Sbjct: 97 IPTGLEALDRQLNGGIPLGEITEIFGASGCGKSQLLLQLCIYTQLVGDPENNQCIYISTE 156
Query: 577 GDFSALRIQKILEKCQYSFK-EVAAIMSRIHISYIWTME 690
R+ +++ Y+ K + +M I Y +E
Sbjct: 157 SPLETRRLHDMID--HYNAKSDKKVLMDNISCIYCQDIE 193
>UniRef50_Q00XV2 Cluster: RAD51-like protein 2; n=2;
Ostreococcus|Rep: RAD51-like protein 2 - Ostreococcus
tauri
Length = 570
Score = 47.2 bits (107), Expect = 5e-04
Identities = 24/66 (36%), Positives = 37/66 (56%), Gaps = 5/66 (7%)
Frame = +1
Query: 427 LDNMLNRGIPAKTITELCGIAGSGKTQLALQIAINCAKE-----THKTVLYIDTKGDFSA 591
LD++L+ GI + ITE CG G GKTQ+ Q+ ++ + T +Y+DT+G F A
Sbjct: 108 LDDVLDGGIGSGEITEFCGCPGVGKTQMCTQVCVSASTPEAFGGTDGEAVYVDTEGSFMA 167
Query: 592 LRIQKI 609
R +
Sbjct: 168 DRAMDV 173
>UniRef50_A2ZKR2 Cluster: Putative uncharacterized protein; n=2;
Oryza sativa|Rep: Putative uncharacterized protein -
Oryza sativa subsp. indica (Rice)
Length = 294
Score = 47.2 bits (107), Expect = 5e-04
Identities = 29/96 (30%), Positives = 46/96 (47%), Gaps = 5/96 (5%)
Frame = +1
Query: 400 ISIKSGVKNLDNMLNRGIPAKTITELCGIAGSGKTQLALQIAINCAKETHK-----TVLY 564
I + +G + LD +L+ GI +ITE+ G SGKTQL + + C + LY
Sbjct: 94 IQVTTGSRELDKILDGGIETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKALY 153
Query: 565 IDTKGDFSALRIQKILEKCQYSFKEVAAIMSRIHIS 672
ID +G F R+ +I ++ + A + R S
Sbjct: 154 IDAEGTFRPQRLLQIADRFAIMIVDSATALYRTDFS 189
>UniRef50_Q9UUL2 Cluster: DNA repair protein rhp57; n=1;
Schizosaccharomyces pombe|Rep: DNA repair protein rhp57
- Schizosaccharomyces pombe (Fission yeast)
Length = 354
Score = 47.2 bits (107), Expect = 5e-04
Identities = 38/147 (25%), Positives = 69/147 (46%), Gaps = 5/147 (3%)
Frame = +1
Query: 202 DHVIKMLFQSRIITILDFLQEDVEKLSNICKLSIPQILEARNRILTKFSAPVINGSCFID 381
D I F+ ++ +D L D+ +L S ++L+ +I + PV C
Sbjct: 13 DEKIASAFELGEVSTVDLLTLDITELERRTHCSQSELLQLIEQI-SLLLQPV---RCSAS 68
Query: 382 KIRKGTISIKSGVKNLDNMLNRGIPAKTITELCGIAGSGKTQLALQIAINCAKE-----T 546
K+ ++ +G LD L+ GIP +TE+CG +GSGK+Q +Q+ +
Sbjct: 69 KVTSKYLT--TGDVKLDETLHGGIPVGQLTEICGESGSGKSQFCMQLCLMVQLPLSLGGM 126
Query: 547 HKTVLYIDTKGDFSALRIQKILEKCQY 627
+K ++I T+ S L +++ E +Y
Sbjct: 127 NKAAVFISTE---SGLETKRLFELARY 150
>UniRef50_Q4N299 Cluster: Putative uncharacterized protein; n=2;
Theileria|Rep: Putative uncharacterized protein -
Theileria parva
Length = 286
Score = 46.8 bits (106), Expect = 6e-04
Identities = 30/83 (36%), Positives = 40/83 (48%), Gaps = 5/83 (6%)
Frame = +1
Query: 379 DKIRKGTISIKSGVKNLDNMLNRGIPAKTITELCGIAGSGKTQLALQIAI-----NCAKE 543
D+ G + GVK +D LN G+ + E+ G +GSGKTQ AL + N
Sbjct: 19 DRDVSGPKHLMFGVKEIDQALNGGLLLGKVCEIYGPSGSGKTQFALSLTSEVLINNLIHS 78
Query: 544 THKTVLYIDTKGDFSALRIQKIL 612
VLYI T G F R+ +IL
Sbjct: 79 KDYVVLYIYTNGTFPIERLNEIL 101
>UniRef50_Q5A2U1 Cluster: Putative uncharacterized protein RAD57;
n=1; Candida albicans|Rep: Putative uncharacterized
protein RAD57 - Candida albicans (Yeast)
Length = 511
Score = 46.8 bits (106), Expect = 6e-04
Identities = 24/71 (33%), Positives = 38/71 (53%), Gaps = 2/71 (2%)
Frame = +1
Query: 406 IKSGVKNLDNMLNRGIPAKTITELCGIAGSGKTQLALQIAINCAKE--THKTVLYIDTKG 579
I +G+ ++D L GIP +TE+ G +G GK+ Q+ NC KE T K + YI T+
Sbjct: 85 ISTGLPSIDRELGGGIPIGEVTEIFGASGCGKSHFLFQLLSNCGKEFSTSKNI-YISTES 143
Query: 580 DFSALRIQKIL 612
R++ +
Sbjct: 144 FLETKRLKDFI 154
>UniRef50_Q55WG1 Cluster: Putative uncharacterized protein; n=1;
Filobasidiella neoformans|Rep: Putative uncharacterized
protein - Cryptococcus neoformans (Filobasidiella
neoformans)
Length = 324
Score = 46.8 bits (106), Expect = 6e-04
Identities = 29/106 (27%), Positives = 55/106 (51%), Gaps = 1/106 (0%)
Frame = +1
Query: 415 GVKNLDNMLNRGIPAKTITELCGIAGSGKTQLALQIAINCAKETHKTVL-YIDTKGDFSA 591
GVK LD +L+ G + E+ G GK+ LAL A+N + + + ++DT+G F+
Sbjct: 86 GVKGLDELLD-GWEGVGVLEIAGPRKVGKSLLALHAALNVLIDNPEAICTWMDTEGTFAP 144
Query: 592 LRIQKILEKCQYSFKEVAAIMSRIHISYIWTMEELVNLFKNLKNGE 729
R K+LE + + +++SRI + + ++++ LK +
Sbjct: 145 ERAGKVLE--AWKIENATSVLSRIMVVPCFKLDDMYETLGRLKEAD 188
>UniRef50_Q6L2I8 Cluster: DNA repair and recombination protein RadB;
n=1; Picrophilus torridus|Rep: DNA repair and
recombination protein RadB - Picrophilus torridus
Length = 228
Score = 46.8 bits (106), Expect = 6e-04
Identities = 27/68 (39%), Positives = 40/68 (58%)
Frame = +1
Query: 406 IKSGVKNLDNMLNRGIPAKTITELCGIAGSGKTQLALQIAINCAKETHKTVLYIDTKGDF 585
+ S VK +D ++N G+ ITE+ G GSGKT +++ I + K V+YIDT+G F
Sbjct: 13 LPSNVKCIDELMNGGLEPGIITEIYGQGGSGKTNISM-IFARSVLLSGKRVIYIDTEG-F 70
Query: 586 SALRIQKI 609
S R +I
Sbjct: 71 STERFSQI 78
>UniRef50_Q54QU4 Cluster: AAA ATPase domain-containing protein; n=1;
Dictyostelium discoideum AX4|Rep: AAA ATPase
domain-containing protein - Dictyostelium discoideum AX4
Length = 564
Score = 46.4 bits (105), Expect = 8e-04
Identities = 26/83 (31%), Positives = 45/83 (54%), Gaps = 5/83 (6%)
Frame = +1
Query: 376 IDKIRKGTISIKSGVKNLDNMLNRGIPAKTITELCGIAGSGKTQLALQIAINCAKE---- 543
++K++ +I + +G K +D L GI ITE+ G +GSGKTQL +Q+++
Sbjct: 157 LEKLQISSIKLSTGCKIMDKCLGGGISPIGITEIAGESGSGKTQLCIQLSLQVQLPFEMG 216
Query: 544 -THKTVLYIDTKGDFSALRIQKI 609
+ LYI T+ F R+ ++
Sbjct: 217 GLNGACLYITTEPPFPTKRLNQM 239
>UniRef50_Q99131 Cluster: REC2 protein; n=1; Ustilago maydis|Rep:
REC2 protein - Ustilago maydis (Smut fungus)
Length = 781
Score = 46.4 bits (105), Expect = 8e-04
Identities = 32/99 (32%), Positives = 50/99 (50%), Gaps = 5/99 (5%)
Frame = +1
Query: 256 LQEDVEKLSNICKLSIPQILE-ARNRILTKF--SAPVINGSCFIDKIRKGTIS--IKSGV 420
+ ED+E S C+ PQ + AR+ + V + S D + G SG
Sbjct: 171 MHEDIELPSTFCRPQTPQTHDVARDEHHDGYLCDPKVDHASVARDVLSLGRQRHVFSSGS 230
Query: 421 KNLDNMLNRGIPAKTITELCGIAGSGKTQLALQIAINCA 537
+ LD++L G+ + +TEL G +GSGKTQ+A+Q+ A
Sbjct: 231 RELDDLLGGGVRSAVLTELVGESGSGKTQMAIQVCTYAA 269
>UniRef50_Q757K4 Cluster: AER008Wp; n=1; Eremothecium gossypii|Rep:
AER008Wp - Ashbya gossypii (Yeast) (Eremothecium
gossypii)
Length = 510
Score = 46.4 bits (105), Expect = 8e-04
Identities = 34/136 (25%), Positives = 66/136 (48%), Gaps = 6/136 (4%)
Frame = +1
Query: 226 QSRIITILDFLQEDVEKLSNICKLSIPQILEARNRILTKFSAPVINGSCFID-KIRKGTI 402
Q + +++LDFL ++L + S+ +I + + + +F A V + + K
Sbjct: 26 QQQGVSVLDFLTLSPQQLVKMLNRSVSEISKFQELLREEFRAEVFQANPILPASALKKVQ 85
Query: 403 SIKSGVKNLDNMLNRGIPAKTITELCGIAGSGKTQLALQ--IAINCAKETHKTV---LYI 567
+G +D +LN GI ITE+ G + SGK+Q +Q +A+ E + ++I
Sbjct: 86 CFTTGDVGIDALLNGGIYTHGITEVFGESSSGKSQFLMQLSLAVQLPLELDGSAGQCVFI 145
Query: 568 DTKGDFSALRIQKILE 615
T+ D RI+ +++
Sbjct: 146 TTESDLPTKRIESMIK 161
>UniRef50_Q6FIZ6 Cluster: Similar to sp|P25301 Saccharomyces
cerevisiae YDR004w RAD57; n=2; Saccharomycetales|Rep:
Similar to sp|P25301 Saccharomyces cerevisiae YDR004w
RAD57 - Candida glabrata (Yeast) (Torulopsis glabrata)
Length = 466
Score = 46.4 bits (105), Expect = 8e-04
Identities = 30/131 (22%), Positives = 63/131 (48%), Gaps = 5/131 (3%)
Frame = +1
Query: 238 ITILDFLQEDVEKLSNICKLSIPQILEARNRILTKFSAPVINGSCFIDKIRKGTISIKSG 417
+T +DFL L+ + + SI +++ + R++ ++ A + S + +G
Sbjct: 30 VTCVDFLTLKAPDLAKLSQRSINEVIRFQQRLIREYDAQYNSNSTKPLAKQIPNKQFTTG 89
Query: 418 VKNLDNMLNRGIPAKTITELCGIAGSGKTQLALQIAINCAKE-----THKTVLYIDTKGD 582
+D +L GI ITE+ G + +GK+QL +Q+ ++ + ++I T+GD
Sbjct: 90 DLGIDEVLGGGISTNCITEIFGESSTGKSQLLMQLCLSVQLPISEGGLNAKCVFITTEGD 149
Query: 583 FSALRIQKILE 615
R+ ++E
Sbjct: 150 LPTNRLAGMIE 160
>UniRef50_Q8I9U4 Cluster: Recombinase Rad51; n=7; Aconoidasida|Rep:
Recombinase Rad51 - Plasmodium falciparum
Length = 350
Score = 46.0 bits (104), Expect = 0.001
Identities = 30/82 (36%), Positives = 42/82 (51%), Gaps = 5/82 (6%)
Frame = +1
Query: 388 RKGTISIKSGVKNLDNMLNRGIPAKTITELCGIAGSGKTQLALQIAINCAKETHKT---- 555
R+ I +G K LD +L GI ITEL G +GK+QL +AI C ++
Sbjct: 106 RQNLIKFTTGSKQLDALLKGGIETGGITELFGEFRTGKSQLCHTLAITCQLPIEQSGGEG 165
Query: 556 -VLYIDTKGDFSALRIQKILEK 618
L+IDT+G F RI I ++
Sbjct: 166 KCLWIDTEGTFRPERIVAIAKR 187
>UniRef50_A1CPK9 Cluster: DNA repair protein (Rad57), putative; n=6;
Trichocomaceae|Rep: DNA repair protein (Rad57), putative
- Aspergillus clavatus
Length = 886
Score = 46.0 bits (104), Expect = 0.001
Identities = 26/71 (36%), Positives = 40/71 (56%), Gaps = 4/71 (5%)
Frame = +1
Query: 427 LDNMLNRGIPAKTITELCGIAGSGKTQ--LALQIAINC--AKETHKTVLYIDTKGDFSAL 594
LD +LN G+P +TE+ G +GSGKTQ L L +A+ + K +YI T+ +
Sbjct: 450 LDELLNGGVPVGYLTEVTGESGSGKTQFLLGLLLAVQLPEPRGLGKGAIYISTEAALATS 509
Query: 595 RIQKILEKCQY 627
R+ ++LE Y
Sbjct: 510 RLSQLLESHPY 520
>UniRef50_Q9HPF2 Cluster: DNA repair and recombination protein radB;
n=5; Halobacteriaceae|Rep: DNA repair and recombination
protein radB - Halobacterium salinarium (Halobacterium
halobium)
Length = 236
Score = 46.0 bits (104), Expect = 0.001
Identities = 27/77 (35%), Positives = 42/77 (54%)
Frame = +1
Query: 385 IRKGTISIKSGVKNLDNMLNRGIPAKTITELCGIAGSGKTQLALQIAINCAKETHKTVLY 564
+R+ + +G LD +L G+ T+T+L G +GKT +AL A+ A V Y
Sbjct: 1 MREDDTHLPTGCGALDELLGGGVERGTVTQLYGPPAAGKTNVALTTAVTTAAAGGLAV-Y 59
Query: 565 IDTKGDFSALRIQKILE 615
+DT+G S R Q++LE
Sbjct: 60 VDTEG-LSLARFQQLLE 75
>UniRef50_UPI0000586FDE Cluster: PREDICTED: similar to
RAD51L2/RAD51C protein; n=1; Strongylocentrotus
purpuratus|Rep: PREDICTED: similar to RAD51L2/RAD51C
protein - Strongylocentrotus purpuratus
Length = 425
Score = 45.6 bits (103), Expect = 0.001
Identities = 23/60 (38%), Positives = 32/60 (53%), Gaps = 5/60 (8%)
Frame = +1
Query: 421 KNLDNMLNRGIPAKTITELCGIAGSGKTQLALQIAIN-----CAKETHKTVLYIDTKGDF 585
+ LD ML G+P ITE+CG G GKTQ +Q+ ++ +YIDT+G F
Sbjct: 128 EELDEMLGGGVPMCKITEICGAPGVGKTQTCIQLCVDVQIPASLGGVEGEAVYIDTEGSF 187
>UniRef50_Q00YW7 Cluster: Meiotic recombination protein DMC1,
putative; n=2; Ostreococcus|Rep: Meiotic recombination
protein DMC1, putative - Ostreococcus tauri
Length = 371
Score = 45.6 bits (103), Expect = 0.001
Identities = 38/177 (21%), Positives = 84/177 (47%), Gaps = 6/177 (3%)
Frame = +1
Query: 187 GTALTD-HVIKMLFQSRIITILDFLQEDVEKLSNICKLSIPQILEARNRILTKFSAPVIN 363
G + TD + +K S I ++ F ++++ + ++LE+ ++L + +
Sbjct: 61 GISATDVNKLKAAGFSTIRQLVMFPRKNIVAVKGFSDAKADKVLESALKMLPESESGGFI 120
Query: 364 GSCFIDKIRKGTISIKSGVKNLDNMLNRGIPAKTITELCGIAGSGKTQLALQIAINCAKE 543
+ + RKG + I G +D +LN G + ITE+ G GKTQ+ +A+
Sbjct: 121 TAAEDCERRKGVLHITCGAAAVDAILNGGFETRAITEIFGEWRCGKTQICHTLAVTTQMP 180
Query: 544 TH-----KTVLYIDTKGDFSALRIQKILEKCQYSFKEVAAIMSRIHISYIWTMEELV 699
V +IDT+ F + R++ I ++ + A++S + ++ + T+++++
Sbjct: 181 IEMGGGCSKVAWIDTENTFRSDRLEAIADRFGL---DRDAVLSNVMVARVDTVDQMM 234
>UniRef50_Q9HJD3 Cluster: DNA repair and recombination protein radB;
n=5; Thermoplasmatales|Rep: DNA repair and recombination
protein radB - Thermoplasma acidophilum
Length = 229
Score = 45.6 bits (103), Expect = 0.001
Identities = 25/65 (38%), Positives = 39/65 (60%)
Frame = +1
Query: 385 IRKGTISIKSGVKNLDNMLNRGIPAKTITELCGIAGSGKTQLALQIAINCAKETHKTVLY 564
+++G I++GV +D +LN G+ ITE+ G GSGKT + + IA A V+Y
Sbjct: 6 LQQGVRRIQTGVGCIDALLNGGLEGGIITEIFGEGGSGKTNICM-IASCSAMSQGLKVIY 64
Query: 565 IDTKG 579
ID++G
Sbjct: 65 IDSEG 69
>UniRef50_UPI0000E47207 Cluster: PREDICTED: hypothetical protein;
n=2; Strongylocentrotus purpuratus|Rep: PREDICTED:
hypothetical protein - Strongylocentrotus purpuratus
Length = 355
Score = 45.2 bits (102), Expect = 0.002
Identities = 27/80 (33%), Positives = 43/80 (53%), Gaps = 5/80 (6%)
Frame = +1
Query: 388 RKGTISIKSGVKNLDNMLNRGIPAKTITELCGIAGSGKTQLALQIAINCAKETHK----- 552
RK + +G LD L+ GI K ITE+ G + +GKTQL LQ+ + +
Sbjct: 75 RKEPTHLTTGCPILDEFLHGGILVKGITEIAGQSAAGKTQLCLQLCLTAQLPVQQGGLAN 134
Query: 553 TVLYIDTKGDFSALRIQKIL 612
V+YI T+ F + R+Q+++
Sbjct: 135 GVVYICTEDVFPSKRLQQLI 154
>UniRef50_Q1DS44 Cluster: Putative uncharacterized protein; n=1;
Coccidioides immitis|Rep: Putative uncharacterized
protein - Coccidioides immitis
Length = 591
Score = 45.2 bits (102), Expect = 0.002
Identities = 24/67 (35%), Positives = 39/67 (58%), Gaps = 4/67 (5%)
Frame = +1
Query: 427 LDNMLNRGIPAKTITELCGIAGSGKTQLALQIAINCAKE----THKTVLYIDTKGDFSAL 594
LD++L+ GI +TE+ G +GSGKTQL L + ++ K LYI T+ D +
Sbjct: 115 LDDVLSGGILTGYVTEIAGESGSGKTQLLLHLLLSVQLPPPYGLRKNALYISTEADLATN 174
Query: 595 RIQKILE 615
R+ ++L+
Sbjct: 175 RLSQLLD 181
>UniRef50_Q9V2F6 Cluster: DNA repair and recombination protein radB;
n=5; Thermococcaceae|Rep: DNA repair and recombination
protein radB - Pyrococcus abyssi
Length = 239
Score = 45.2 bits (102), Expect = 0.002
Identities = 23/72 (31%), Positives = 41/72 (56%)
Frame = +1
Query: 400 ISIKSGVKNLDNMLNRGIPAKTITELCGIAGSGKTQLALQIAINCAKETHKTVLYIDTKG 579
+++ +GVK LD +L G+ I ++ G +GKT A+Q+ + V Y+DT+G
Sbjct: 11 MTLTTGVKGLDELLGGGVARGVILQVYGPFATGKTTFAMQVGL----LNEGKVAYVDTEG 66
Query: 580 DFSALRIQKILE 615
FS R++++ E
Sbjct: 67 GFSPERLKQMAE 78
>UniRef50_O93748 Cluster: DNA repair and recombination protein radA;
n=2; Thermoprotei|Rep: DNA repair and recombination
protein radA - Cenarchaeum symbiosum
Length = 398
Score = 45.2 bits (102), Expect = 0.002
Identities = 30/83 (36%), Positives = 41/83 (49%), Gaps = 5/83 (6%)
Frame = +1
Query: 376 IDKIRKGTISIKSGVKNLDNMLNRGIPAKTITELCGIAGSGKTQLALQIAINCAKETHK- 552
I K R+ I +G LD +L GI + ITE+ G GSGKTQ + + K +
Sbjct: 79 IYKRRQSIGMITTGTDALDALLGGGIETQAITEVFGEFGSGKTQFCHTMCVTTQKPKEEG 138
Query: 553 ----TVLYIDTKGDFSALRIQKI 609
V+YIDT+G F R+ I
Sbjct: 139 GLGGGVMYIDTEGTFRPERVVTI 161
>UniRef50_A0RYZ3 Cluster: RecA/RadA recombinase related protein;
n=1; Cenarchaeum symbiosum|Rep: RecA/RadA recombinase
related protein - Cenarchaeum symbiosum
Length = 218
Score = 44.8 bits (101), Expect = 0.002
Identities = 24/69 (34%), Positives = 38/69 (55%)
Frame = +1
Query: 406 IKSGVKNLDNMLNRGIPAKTITELCGIAGSGKTQLALQIAINCAKETHKTVLYIDTKGDF 585
I+SG++ +D L G+ IT++ G SGK+Q+A +I E + V++ DT G
Sbjct: 2 IRSGIRGIDGFLGGGLRGGFITDIFGPPASGKSQIAFEICAGALAEGGR-VIFHDTSGTL 60
Query: 586 SALRIQKIL 612
RI +IL
Sbjct: 61 RPERILQIL 69
>UniRef50_Q9PR61 Cluster: Protein recA; n=1; Ureaplasma parvum|Rep:
Protein recA - Ureaplasma parvum (Ureaplasma urealyticum
biotype 1)
Length = 334
Score = 44.8 bits (101), Expect = 0.002
Identities = 31/76 (40%), Positives = 43/76 (56%), Gaps = 3/76 (3%)
Frame = +1
Query: 367 SCFI-DKIRKGTIS-IKSGVKNLDNMLN-RGIPAKTITELCGIAGSGKTQLALQIAINCA 537
S FI D+I+ I+ I +G ++D + GIP ITE+ G SGKT +ALQ C
Sbjct: 24 SYFIADEIKDEKINAISTGSIHIDQITGINGIPVGKITEIYGNESSGKTTIALQTIAECQ 83
Query: 538 KETHKTVLYIDTKGDF 585
K T TV+ +D +G F
Sbjct: 84 K-TGGTVVLLDLEGSF 98
>UniRef50_P38953 Cluster: DNA repair protein RAD55; n=2;
Saccharomyces cerevisiae|Rep: DNA repair protein RAD55 -
Saccharomyces cerevisiae (Baker's yeast)
Length = 406
Score = 44.4 bits (100), Expect = 0.003
Identities = 33/110 (30%), Positives = 56/110 (50%), Gaps = 6/110 (5%)
Frame = +1
Query: 406 IKSGVKNLDNMLNRGIPAKTITELCGIAGSGKTQLALQIAINCAKETHKT------VLYI 567
+ SG+ LD +LN G A++I E+ G G GKT +Q+ N + ++ +L+I
Sbjct: 18 LSSGITGLDEILNLGFQARSIYEIFGPPGIGKTNFGIQLVCNSLEGIQQSEINDDKILWI 77
Query: 568 DTKGDFSALRIQKILEKCQYSFKEVAAIMSRIHISYIWTMEELVNLFKNL 717
+T F + I + E+ Q FK V + R+ I+ +L+ F+NL
Sbjct: 78 ET---FQEMPINILRERFQ-KFKIVEENVKRVRIT---KFGQLLYFFQNL 120
>UniRef50_Q6YU07 Cluster: Putative XRCC3; n=2; Oryza sativa|Rep:
Putative XRCC3 - Oryza sativa subsp. japonica (Rice)
Length = 290
Score = 44.0 bits (99), Expect = 0.004
Identities = 21/47 (44%), Positives = 32/47 (68%)
Frame = +1
Query: 388 RKGTISIKSGVKNLDNMLNRGIPAKTITELCGIAGSGKTQLALQIAI 528
R G +S+ G LD +L+ G+P ++TE+ G + SGKTQL LQ+A+
Sbjct: 39 RAGKLSL--GCPVLDRLLSGGLPPASVTEIAGESASGKTQLCLQLAL 83
>UniRef50_A6R196 Cluster: DNA repair protein RAD51; n=1; Ajellomyces
capsulatus NAm1|Rep: DNA repair protein RAD51 -
Ajellomyces capsulatus NAm1
Length = 297
Score = 44.0 bits (99), Expect = 0.004
Identities = 26/82 (31%), Positives = 41/82 (50%), Gaps = 5/82 (6%)
Frame = +1
Query: 388 RKGTISIKSGVKNLDNMLNRGIPAKTITELCGIAGSGKTQLALQIAINCAKE-----THK 552
+K T + G K LD +L GI +ITE+ G +GK+Q+ +A+ C
Sbjct: 70 QKATKILAEGSKQLDTLLAGGIETGSITEIFGEFRTGKSQICHTLAVTCQLPFDMGGGEG 129
Query: 553 TVLYIDTKGDFSALRIQKILEK 618
LYIDT+G F R+ + ++
Sbjct: 130 KCLYIDTEGTFRPTRLLAVAQR 151
>UniRef50_A4XGH9 Cluster: RecA-superfamily ATPase implicated in
signal transduction-like protein; n=1;
Caldicellulosiruptor saccharolyticus DSM 8903|Rep:
RecA-superfamily ATPase implicated in signal
transduction-like protein - Caldicellulosiruptor
saccharolyticus (strain ATCC 43494 / DSM 8903)
Length = 214
Score = 43.6 bits (98), Expect = 0.006
Identities = 21/49 (42%), Positives = 31/49 (63%)
Frame = +1
Query: 415 GVKNLDNMLNRGIPAKTITELCGIAGSGKTQLALQIAINCAKETHKTVL 561
G+++LD MLN G+P TIT + G G+GKT AL+ + A+ K +L
Sbjct: 144 GIRDLDEMLNGGLPEGTITIISGGTGTGKTTFALKFLLEGAEIGEKGLL 192
>UniRef50_Q24DN8 Cluster: Putative uncharacterized protein; n=1;
Tetrahymena thermophila SB210|Rep: Putative
uncharacterized protein - Tetrahymena thermophila SB210
Length = 318
Score = 43.6 bits (98), Expect = 0.006
Identities = 36/148 (24%), Positives = 67/148 (45%)
Frame = +1
Query: 166 QKLTHVEGTALTDHVIKMLFQSRIITILDFLQEDVEKLSNICKLSIPQILEARNRILTKF 345
Q T E + ++ L S I +ED+ KL+ +++ Q+ +A+ +I + F
Sbjct: 6 QMQTQNEKQLQLQNYLEQLGVSNIYQYCLSYEEDLLKLN---RMTNKQLNDAQYKISSSF 62
Query: 346 SAPVINGSCFIDKIRKGTISIKSGVKNLDNMLNRGIPAKTITELCGIAGSGKTQLALQIA 525
+ + + K ++ ++ G K LD++L G+ + EL G SGK+ LA ++
Sbjct: 63 CKTPLQNAKELLKKQQNLQNLTFGEKELDDLLEGGLQIGKVYELSGYPCSGKSILAQKLI 122
Query: 526 INCAKETHKTVLYIDTKGDFSALRIQKI 609
K K Y+D F+ R K+
Sbjct: 123 SQNFKCNQKGAWYLDISNQFNLKRFLKM 150
>UniRef50_Q2USE9 Cluster: Predicted protein; n=6;
Trichocomaceae|Rep: Predicted protein - Aspergillus
oryzae
Length = 375
Score = 43.6 bits (98), Expect = 0.006
Identities = 22/59 (37%), Positives = 35/59 (59%)
Frame = +1
Query: 442 NRGIPAKTITELCGIAGSGKTQLALQIAINCAKETHKTVLYIDTKGDFSALRIQKILEK 618
+ GIP +TE+ G G+GKT LAL +A + + K V++IDT +R+ +L+K
Sbjct: 65 SNGIPCGHVTEVYGPPGAGKTSLALSVATSALRNGDK-VIWIDTGSPLPKVRLASMLKK 122
>UniRef50_A7TGZ2 Cluster: Putative uncharacterized protein; n=1;
Vanderwaltozyma polyspora DSM 70294|Rep: Putative
uncharacterized protein - Vanderwaltozyma polyspora DSM
70294
Length = 422
Score = 43.6 bits (98), Expect = 0.006
Identities = 23/59 (38%), Positives = 35/59 (59%), Gaps = 3/59 (5%)
Frame = +1
Query: 406 IKSGVKNLDNMLNRGIPAKTITELCGIAGSGKTQLALQIA---INCAKETHKTVLYIDT 573
IKSG++ LD L G +++I E+ G G GKT+L LQ+ +N + VL+I+T
Sbjct: 18 IKSGIEELDECLEDGFQSRSIYEIYGPPGIGKTRLGLQVMSNFVNDKSRADEKVLWIET 76
>UniRef50_A2QR86 Cluster: Remark: alternate names = YDR004W; n=1;
Aspergillus niger|Rep: Remark: alternate names = YDR004W
- Aspergillus niger
Length = 516
Score = 43.6 bits (98), Expect = 0.006
Identities = 24/67 (35%), Positives = 37/67 (55%), Gaps = 4/67 (5%)
Frame = +1
Query: 427 LDNMLNRGIPAKTITELCGIAGSGKTQ----LALQIAINCAKETHKTVLYIDTKGDFSAL 594
LD +L+ GIP +TE+ G +GSGKTQ L L + + K +YI T+ S
Sbjct: 86 LDALLDGGIPTGYVTEVTGESGSGKTQFLLTLLLAAQLPAPRGLDKCAIYISTEAPLSTP 145
Query: 595 RIQKILE 615
R+ +++E
Sbjct: 146 RLSQLIE 152
>UniRef50_Q8ZTI5 Cluster: DNA repair protein radA; n=5;
Pyrobaculum|Rep: DNA repair protein radA - Pyrobaculum
aerophilum
Length = 311
Score = 43.6 bits (98), Expect = 0.006
Identities = 28/101 (27%), Positives = 51/101 (50%), Gaps = 2/101 (1%)
Frame = +1
Query: 403 SIKSGVKNLDNMLN-RGIPAKTITELCGIAGSGKTQLALQIAINCAKETH-KTVLYIDTK 576
+ K+GV D RGI I E G G+GK+ LA Q ++ +E + V+YIDT+
Sbjct: 80 AFKTGVAEFDEKTPWRGIREAFIYEFAGEFGAGKSMLAHQASVAALREGFTERVVYIDTE 139
Query: 577 GDFSALRIQKILEKCQYSFKEVAAIMSRIHISYIWTMEELV 699
G F+ I+ + + + + +A + + + +E++V
Sbjct: 140 GTFNEALIEAVARRFELDVERIADSIYVYQPANVVQLEQIV 180
>UniRef50_UPI0000585DAC Cluster: PREDICTED: similar to RAD51-like 1
(S. cerevisiae), partial; n=1; Strongylocentrotus
purpuratus|Rep: PREDICTED: similar to RAD51-like 1 (S.
cerevisiae), partial - Strongylocentrotus purpuratus
Length = 128
Score = 43.2 bits (97), Expect = 0.007
Identities = 30/118 (25%), Positives = 57/118 (48%), Gaps = 2/118 (1%)
Frame = +1
Query: 181 VEGTALTDHVIKMLFQSRIITILDFLQEDVEKLSNICKLSIPQILEARNRILTKFSAPVI 360
V L + ++ L + +I+T D L ++ +L I P+I EA + ++ AP
Sbjct: 6 VHRLGLDEDIVTRLTRHKILTCQDLLTKNRLELLRIFNTCEPRIREAIMKA-SRACAPTS 64
Query: 361 NGSCFIDKIRKGTIS--IKSGVKNLDNMLNRGIPAKTITELCGIAGSGKTQLALQIAI 528
+ + + G+ + + + LD +L G+ TITE+ G G GKTQ + +++
Sbjct: 65 TKALQLCERNTGSCPGFLPTSLTTLDQLLQGGLLLGTITEIAGPPGCGKTQFCMMLSV 122
>UniRef50_UPI000065EE6A Cluster: DNA-repair protein XRCC3 (X-ray
repair cross-complementing protein 3).; n=1; Takifugu
rubripes|Rep: DNA-repair protein XRCC3 (X-ray repair
cross-complementing protein 3). - Takifugu rubripes
Length = 346
Score = 43.2 bits (97), Expect = 0.007
Identities = 24/67 (35%), Positives = 38/67 (56%), Gaps = 5/67 (7%)
Frame = +1
Query: 427 LDNMLNRGIPAKTITELCGIAGSGKTQLALQIAINCAKET-----HKTVLYIDTKGDFSA 591
++ +L G+P ITEL G +G+GKTQLALQ+ + T +YI T+ F
Sbjct: 89 INELLRGGLPVGRITELSGQSGAGKTQLALQLCLCVQYPTDYGGLDSGAVYICTENSFPI 148
Query: 592 LRIQKIL 612
R+Q+++
Sbjct: 149 RRLQQLV 155
>UniRef50_Q01C18 Cluster: Rad51B protein; n=2; Ostreococcus|Rep:
Rad51B protein - Ostreococcus tauri
Length = 618
Score = 42.7 bits (96), Expect = 0.010
Identities = 18/51 (35%), Positives = 31/51 (60%)
Frame = +1
Query: 427 LDNMLNRGIPAKTITELCGIAGSGKTQLALQIAINCAKETHKTVLYIDTKG 579
+D L G+ + ITE+CG +G+GKT L Q+A+ + + +Y+ T+G
Sbjct: 342 IDAALRGGVRTRQITEVCGESGTGKTHLCAQLALFAQLDLGGSTVYVHTEG 392
>UniRef50_Q18FI4 Cluster: DNA repair and recombination protein RadB;
n=2; Halobacteriaceae|Rep: DNA repair and recombination
protein RadB - Haloquadratum walsbyi (strain DSM 16790)
Length = 257
Score = 42.7 bits (96), Expect = 0.010
Identities = 22/70 (31%), Positives = 42/70 (60%)
Frame = +1
Query: 406 IKSGVKNLDNMLNRGIPAKTITELCGIAGSGKTQLALQIAINCAKETHKTVLYIDTKGDF 585
+ +G ++LD++L G T+T++ G +GKT + L A++ A T +Y+DT+G
Sbjct: 5 LSTGCQSLDSLLGGGFERGTVTQVYGPPAAGKTNIMLSAALHTA-ATDSMAVYVDTEG-I 62
Query: 586 SALRIQKILE 615
S+ R ++I +
Sbjct: 63 SSDRFRQIAD 72
>UniRef50_A7D6B3 Cluster: KaiC domain protein; n=6; cellular
organisms|Rep: KaiC domain protein - Halorubrum
lacusprofundi ATCC 49239
Length = 499
Score = 42.7 bits (96), Expect = 0.010
Identities = 27/90 (30%), Positives = 44/90 (48%), Gaps = 8/90 (8%)
Frame = +1
Query: 406 IKSGVKNLDNMLNRGIPAKTITELCGIAGSGKTQLALQIAINCAKETHKTVLYI--DTKG 579
I SG+ D +L+ GI T+T + G G GKT L+ Q A ++V+Y+ + KG
Sbjct: 245 ISSGIPEFDELLHGGIERGTVTVVSGPTGVGKTTLSTQFMKEAAGRGERSVIYLFEENKG 304
Query: 580 DFSA------LRIQKILEKCQYSFKEVAAI 651
F + + +++EK EV A+
Sbjct: 305 TFLTRSRAVNIPVDEMMEKGTLQVNEVEAL 334
Score = 33.1 bits (72), Expect = 8.0
Identities = 19/62 (30%), Positives = 35/62 (56%)
Frame = +1
Query: 412 SGVKNLDNMLNRGIPAKTITELCGIAGSGKTQLALQIAINCAKETHKTVLYIDTKGDFSA 591
+G++ LD +L+ G+ + + G AGSGKT L+ + + +TVL+I+ + D
Sbjct: 11 TGIRGLDEVLSGGLVPERSYMVRGQAGSGKTILSFHF-LQQGVDEGETVLFINLEEDLRD 69
Query: 592 LR 597
L+
Sbjct: 70 LK 71
>UniRef50_Q6CPZ2 Cluster: Kluyveromyces lactis strain NRRL Y-1140
chromosome E of strain NRRL Y- 1140 of Kluyveromyces
lactis; n=1; Kluyveromyces lactis|Rep: Kluyveromyces
lactis strain NRRL Y-1140 chromosome E of strain NRRL Y-
1140 of Kluyveromyces lactis - Kluyveromyces lactis
(Yeast) (Candida sphaerica)
Length = 413
Score = 42.3 bits (95), Expect = 0.013
Identities = 21/56 (37%), Positives = 35/56 (62%)
Frame = +1
Query: 406 IKSGVKNLDNMLNRGIPAKTITELCGIAGSGKTQLALQIAINCAKETHKTVLYIDT 573
++SG+++LD+ LN G ++I E+ G G GKT+ A+Q+ N + L+IDT
Sbjct: 18 VRSGIESLDDSLNDGFQPQSIYEVYGPPGIGKTKFAVQLVNN--NQNRMKCLWIDT 71
>UniRef50_Q6C269 Cluster: Yarrowia lipolytica chromosome F of strain
CLIB122 of Yarrowia lipolytica; n=1; Yarrowia
lipolytica|Rep: Yarrowia lipolytica chromosome F of
strain CLIB122 of Yarrowia lipolytica - Yarrowia
lipolytica (Candida lipolytica)
Length = 421
Score = 42.3 bits (95), Expect = 0.013
Identities = 25/97 (25%), Positives = 50/97 (51%), Gaps = 5/97 (5%)
Frame = +1
Query: 403 SIKSGVKNLDNMLNRGIPAKTITELCGIAGSGKTQLALQIAINCAKE-----THKTVLYI 567
+I +GV+ +D ++N G P T+ E+ G + +GK+ LQ+ +N K ++I
Sbjct: 90 AISTGVRKIDTVMNGGFPTGTLCEVAGESAAGKSHFLLQLCVNVQLARGEGGLGKKAVFI 149
Query: 568 DTKGDFSALRIQKILEKCQYSFKEVAAIMSRIHISYI 678
T+ S L +++++ + K +S H+S+I
Sbjct: 150 STE---SGLETRRLVQMMDHVIKLGHDNISLHHVSFI 183
>UniRef50_A7D6F3 Cluster: KaiC domain protein; n=1; Halorubrum
lacusprofundi ATCC 49239|Rep: KaiC domain protein -
Halorubrum lacusprofundi ATCC 49239
Length = 513
Score = 42.3 bits (95), Expect = 0.013
Identities = 31/103 (30%), Positives = 56/103 (54%)
Frame = +1
Query: 415 GVKNLDNMLNRGIPAKTITELCGIAGSGKTQLALQIAINCAKETHKTVLYIDTKGDFSAL 594
G++ LD M+ G+P +++ + G AG+GKT ALQ +N A E+ + +YI + +
Sbjct: 289 GIEGLDEMILGGVPRRSLLSVIGGAGTGKTTFALQF-LNEALESDRKGVYITLEQTRES- 346
Query: 595 RIQKILEKCQYSFKEVAAIMSRIHISYIWTMEELVNLFKNLKN 723
I E+ +SF+E A R+ + I + E+ N +++N
Sbjct: 347 -ILSTAEEKGWSFREHAE-ADRLAVVAIDPI-EMANSLASIRN 386
>UniRef50_A7ATP8 Cluster: Rad51 protein, putative; n=1; Babesia
bovis|Rep: Rad51 protein, putative - Babesia bovis
Length = 346
Score = 41.9 bits (94), Expect = 0.017
Identities = 40/159 (25%), Positives = 69/159 (43%), Gaps = 5/159 (3%)
Frame = +1
Query: 211 IKMLFQSRIITILDFLQEDVEKLSNICKLSIPQILEARNRILTKFSAPVINGSCFIDKIR 390
I +L + +T+ Q + L + LS ++ + + I+ + P I + + R
Sbjct: 41 IDVLKAAGYVTLDSIAQVASKTLLEVKGLSEQKVAKIKE-IVKELCPPDICTAAEYLECR 99
Query: 391 KGTISIKSGVKNLDNMLNRGIPAKTITELCGIAGSGKTQLALQIAINCAKETHKT----- 555
I +G LD +L GI + +ITE+ G +GKTQL +AI +
Sbjct: 100 LNLIKFTTGSTALDALLQGGIESGSITEIIGDFSTGKTQLCHTLAITSQLPIEQNGGEGK 159
Query: 556 VLYIDTKGDFSALRIQKILEKCQYSFKEVAAIMSRIHIS 672
L+IDT+ F R+ I + S E A + + +S
Sbjct: 160 CLWIDTQNSFRPERLGPIANRFGLSHAECVANIVYVKVS 198
>UniRef50_Q5V0B5 Cluster: Circadian regulator; n=1; Haloarcula
marismortui|Rep: Circadian regulator - Haloarcula
marismortui (Halobacterium marismortui)
Length = 241
Score = 41.9 bits (94), Expect = 0.017
Identities = 22/63 (34%), Positives = 37/63 (58%)
Frame = +1
Query: 409 KSGVKNLDNMLNRGIPAKTITELCGIAGSGKTQLALQIAINCAKETHKTVLYIDTKGDFS 588
K+G++ LD++LN GI + T + G G+GK+ L LQ N ++ + +Y+ + D S
Sbjct: 6 KTGIEGLDDILNGGIVKNSTTLVSGNPGAGKSILCLQYIYNGVEKYDEKGIYLSFEEDES 65
Query: 589 ALR 597
LR
Sbjct: 66 DLR 68
>UniRef50_Q2Y4W8 Cluster: Putative uncharacterized protein C5_0035;
n=2; environmental samples|Rep: Putative uncharacterized
protein C5_0035 - uncultured archaeon
Length = 241
Score = 41.9 bits (94), Expect = 0.017
Identities = 28/78 (35%), Positives = 40/78 (51%), Gaps = 1/78 (1%)
Frame = +1
Query: 406 IKSGVKNLDNMLNRGIPAKTITELCGIAGSGKTQLALQIAINCAKETHKTVLYIDTKGDF 585
IK+ ++ LD L GIP +I+ +CG+AG K+ A I N A LYI +
Sbjct: 10 IKTYIERLDEQLEGGIPKGSISLICGVAGCMKSSFAYSILYNNAVVGDLKGLYITLEQAV 69
Query: 586 SALRIQ-KILEKCQYSFK 636
+L+ Q K LE + S K
Sbjct: 70 PSLKQQMKTLEMVEESDK 87
>UniRef50_Q0W7M8 Cluster: Putative uncharacterized protein; n=1;
uncultured methanogenic archaeon RC-I|Rep: Putative
uncharacterized protein - Uncultured methanogenic
archaeon RC-I
Length = 231
Score = 41.9 bits (94), Expect = 0.017
Identities = 20/51 (39%), Positives = 30/51 (58%)
Frame = +1
Query: 406 IKSGVKNLDNMLNRGIPAKTITELCGIAGSGKTQLALQIAINCAKETHKTV 558
+ +GV+ LD +L G P K + + G G+GK+ LALQ +N K K+V
Sbjct: 4 LSTGVQGLDELLQGGFPEKHMIVVVGGMGTGKSTLALQFLVNGLKNGEKSV 54
>UniRef50_P47581 Cluster: Protein recA; n=2; Mycoplasma|Rep: Protein
recA - Mycoplasma genitalium
Length = 340
Score = 41.9 bits (94), Expect = 0.017
Identities = 28/71 (39%), Positives = 37/71 (52%), Gaps = 2/71 (2%)
Frame = +1
Query: 373 FIDKIRKGTI-SIKSGVKNLDNMLNRG-IPAKTITELCGIAGSGKTQLALQIAINCAKET 546
F D + I +I +G NLD L G +P I EL G SGKT +AL A+ ++
Sbjct: 29 FFDAKKNSEIETISTGSLNLDEALGSGGLPLGRIVELYGNESSGKTTIALN-AVASFQKA 87
Query: 547 HKTVLYIDTKG 579
KT YID +G
Sbjct: 88 GKTACYIDAEG 98
>UniRef50_O43542 Cluster: DNA-repair protein XRCC3; n=19;
Euteleostomi|Rep: DNA-repair protein XRCC3 - Homo
sapiens (Human)
Length = 346
Score = 41.5 bits (93), Expect = 0.023
Identities = 26/71 (36%), Positives = 40/71 (56%), Gaps = 5/71 (7%)
Frame = +1
Query: 415 GVKNLDNMLNRGIPAKTITELCGIAGSGKTQLALQ--IAINCAKE---THKTVLYIDTKG 579
G LD +L G+P ITEL G + +GKTQLALQ +A+ ++ +YI T+
Sbjct: 85 GCPVLDALLRGGLPLDGITELAGRSSAGKTQLALQLCLAVQFPRQHGGLEAGAVYICTED 144
Query: 580 DFSALRIQKIL 612
F R+Q+++
Sbjct: 145 AFPHKRLQQLM 155
>UniRef50_P25301 Cluster: DNA repair protein RAD57; n=2;
Saccharomyces cerevisiae|Rep: DNA repair protein RAD57 -
Saccharomyces cerevisiae (Baker's yeast)
Length = 460
Score = 41.5 bits (93), Expect = 0.023
Identities = 31/132 (23%), Positives = 65/132 (49%), Gaps = 7/132 (5%)
Frame = +1
Query: 238 ITILDFLQEDVEKLSNICKLSIPQILEARNRILTKFSAPVINGSCFIDKIR--KGTISIK 411
+ ++DFL ++L+ + + SI ++ + ++ +++ + C + I G
Sbjct: 43 VCVVDFLTLTPKELARLIQRSINEVFRFQQLLVHEYNEKYLE-ICEKNSISPDNGPECFT 101
Query: 412 SGVKNLDNMLNRGIPAKTITELCGIAGSGKTQLALQIAINC-----AKETHKTVLYIDTK 576
+ +D +L GI ITE+ G + +GK+QL +Q+A++ A +YI T+
Sbjct: 102 TADVAMDELLGGGIFTHGITEIFGESSTGKSQLLMQLALSVQLSEPAGGLGGKCVYITTE 161
Query: 577 GDFSALRIQKIL 612
GD R++ +L
Sbjct: 162 GDLPTQRLESML 173
>UniRef50_Q0AB05 Cluster: Putative circadian clock protein, KaiC;
n=1; Alkalilimnicola ehrlichei MLHE-1|Rep: Putative
circadian clock protein, KaiC - Alkalilimnicola
ehrlichei (strain MLHE-1)
Length = 492
Score = 41.1 bits (92), Expect = 0.030
Identities = 20/57 (35%), Positives = 32/57 (56%)
Frame = +1
Query: 394 GTISIKSGVKNLDNMLNRGIPAKTITELCGIAGSGKTQLALQIAINCAKETHKTVLY 564
GT+ +SG D ML+ G+ TIT + G +G GK+ +A IA A + H+ ++
Sbjct: 252 GTVQFRSGNAAFDEMLHGGLENGTITLITGPSGIGKSTVAAMIAAAAAHDGHRASVF 308
>UniRef50_Q3ADP9 Cluster: Conserved domain protein; n=1;
Carboxydothermus hydrogenoformans Z-2901|Rep: Conserved
domain protein - Carboxydothermus hydrogenoformans
(strain Z-2901 / DSM 6008)
Length = 296
Score = 40.7 bits (91), Expect = 0.040
Identities = 22/54 (40%), Positives = 30/54 (55%)
Frame = +1
Query: 412 SGVKNLDNMLNRGIPAKTITELCGIAGSGKTQLALQIAINCAKETHKTVLYIDT 573
+G++N D +L GIP +I + G GSGKT L I N A+ K+ LY T
Sbjct: 6 TGIENFDEVLGGGIPLYSINIIAGNPGSGKTILVQNILFNAARRGLKS-LYFTT 58
Score = 38.3 bits (85), Expect = 0.21
Identities = 18/46 (39%), Positives = 27/46 (58%)
Frame = +1
Query: 415 GVKNLDNMLNRGIPAKTITELCGIAGSGKTQLALQIAINCAKETHK 552
G++ LDN+L GI + T L G G+GKT +L+ A+ A+ K
Sbjct: 247 GIEGLDNLLGGGIYRGSSTLLAGATGTGKTLFSLKFALEAAQRGEK 292
>UniRef50_A2DYQ0 Cluster: Putative uncharacterized protein; n=1;
Trichomonas vaginalis G3|Rep: Putative uncharacterized
protein - Trichomonas vaginalis G3
Length = 288
Score = 40.7 bits (91), Expect = 0.040
Identities = 20/38 (52%), Positives = 27/38 (71%)
Frame = +1
Query: 466 ITELCGIAGSGKTQLALQIAINCAKETHKTVLYIDTKG 579
+TE+CGI GSG+T L L+ A + TH T L+IDT+G
Sbjct: 107 VTEICGIPGSGRTSLCLRYA-DSISNTHST-LWIDTEG 142
>UniRef50_Q9P6E6 Cluster: Related to RAD57 protein; n=2; Neurospora
crassa|Rep: Related to RAD57 protein - Neurospora crassa
Length = 510
Score = 40.7 bits (91), Expect = 0.040
Identities = 23/67 (34%), Positives = 37/67 (55%), Gaps = 4/67 (5%)
Frame = +1
Query: 424 NLDNMLNRGIPAKTITELCGIAGSGKTQLALQIAINC-AKETH---KTVLYIDTKGDFSA 591
++D L GIPA +TE+ G +G+GKTQ L + ++ H + LYI T+ S
Sbjct: 113 DIDRALGGGIPAGYVTEITGESGAGKTQFLLTLLLSVQLPPPHGLGRPALYISTEAPLST 172
Query: 592 LRIQKIL 612
R+ ++L
Sbjct: 173 RRLAQML 179
>UniRef50_Q2GW05 Cluster: Putative uncharacterized protein; n=1;
Chaetomium globosum|Rep: Putative uncharacterized
protein - Chaetomium globosum (Soil fungus)
Length = 476
Score = 40.7 bits (91), Expect = 0.040
Identities = 24/67 (35%), Positives = 36/67 (53%), Gaps = 4/67 (5%)
Frame = +1
Query: 424 NLDNMLNRGIPAKTITELCGIAGSGKTQLALQIAINC-AKETH---KTVLYIDTKGDFSA 591
+LD L GIPA +TE+ G +G+GKTQ L + + H + LYI T+ S
Sbjct: 133 DLDRALGGGIPAGYVTEVTGESGAGKTQFLLSLLLAAQLPPPHGLSRPALYISTEAPLST 192
Query: 592 LRIQKIL 612
R+ ++L
Sbjct: 193 RRLAQML 199
>UniRef50_Q0D0U2 Cluster: Putative uncharacterized protein; n=1;
Aspergillus terreus NIH2624|Rep: Putative
uncharacterized protein - Aspergillus terreus (strain
NIH 2624)
Length = 743
Score = 40.7 bits (91), Expect = 0.040
Identities = 23/67 (34%), Positives = 37/67 (55%), Gaps = 4/67 (5%)
Frame = +1
Query: 427 LDNMLNRGIPAKTITELCGIAGSGKTQ----LALQIAINCAKETHKTVLYIDTKGDFSAL 594
LD +L+ GIP +TE+ G + SGKTQ L L + + +K +YI T+ +
Sbjct: 293 LDALLHGGIPTGYLTEVTGESASGKTQFLLTLLLAAQLPAPRGLNKRAIYISTEAPIATS 352
Query: 595 RIQKILE 615
R+ ++LE
Sbjct: 353 RLTQMLE 359
>UniRef50_Q9HMM4 Cluster: DNA repair and recombination protein radA;
n=160; Halobacteriaceae|Rep: DNA repair and
recombination protein radA - Halobacterium salinarium
(Halobacterium halobium)
Length = 343
Score = 40.7 bits (91), Expect = 0.040
Identities = 21/70 (30%), Positives = 40/70 (57%), Gaps = 5/70 (7%)
Frame = +1
Query: 418 VKNLDNMLNRGIPAKTITELCGIAGSGKTQLALQIAINCAKET-----HKTVLYIDTKGD 582
+ +D++L G+ ++ITE+ G G+GK+Q+ Q+A+N T H ++ID++
Sbjct: 86 IPEVDDLLGGGVETQSITEVYGEFGAGKSQVTHQLAVNVQLPTEYGGLHGRAVFIDSEDT 145
Query: 583 FSALRIQKIL 612
F RI ++
Sbjct: 146 FRPERIDDMV 155
>UniRef50_Q657A2 Cluster: DNA repair protein radA (RadA)-like; n=3;
Oryza sativa|Rep: DNA repair protein radA (RadA)-like -
Oryza sativa subsp. japonica (Rice)
Length = 309
Score = 40.3 bits (90), Expect = 0.052
Identities = 30/96 (31%), Positives = 47/96 (48%), Gaps = 8/96 (8%)
Frame = +1
Query: 358 INGSCFIDKIRKGTISIKSGVKNLDNMLNRGIPAKTITELC---GIAGSGKTQLALQIAI 528
++G C++ GT SI + + +++ G K + L G+ G GKTQL +Q+AI
Sbjct: 33 MHGICYLMSNHGGT-SILDLLTSTTSLVE-GFTVKRLLRLFDSGGVPGVGKTQLGIQLAI 90
Query: 529 NCAKETH-----KTVLYIDTKGDFSALRIQKILEKC 621
N +YIDT+G F R+ +I E C
Sbjct: 91 NVQIPVEYGGLGGKAVYIDTEGSFMVERVYQIAEGC 126
>UniRef50_Q12XV7 Cluster: KaiC; n=1; Methanococcoides burtonii DSM
6242|Rep: KaiC - Methanococcoides burtonii (strain DSM
6242)
Length = 301
Score = 40.3 bits (90), Expect = 0.052
Identities = 26/77 (33%), Positives = 40/77 (51%), Gaps = 1/77 (1%)
Frame = +1
Query: 337 TKFSAPV-INGSCFIDKIRKGTISIKSGVKNLDNMLNRGIPAKTITELCGIAGSGKTQLA 513
TKF + + IN IDK+ K + +GV LD+ML G+P + + G G+GKT L
Sbjct: 44 TKFKSKIDINN---IDKVIK---RVSTGVAGLDDMLEGGVPKGSSVIVTGPPGTGKTTLC 97
Query: 514 LQIAINCAKETHKTVLY 564
+Q + K K + +
Sbjct: 98 MQFLMEGVKADEKCLFF 114
>UniRef50_Q02AB2 Cluster: RecA domain protein; n=1; Solibacter
usitatus Ellin6076|Rep: RecA domain protein - Solibacter
usitatus (strain Ellin6076)
Length = 248
Score = 39.9 bits (89), Expect = 0.069
Identities = 24/60 (40%), Positives = 32/60 (53%)
Frame = +1
Query: 412 SGVKNLDNMLNRGIPAKTITELCGIAGSGKTQLALQIAINCAKETHKTVLYIDTKGDFSA 591
SG + LD L G+P + E G +G GKT LA+QIA + A+ T +ID F A
Sbjct: 30 SGFQALDEALGGGLPRGQMVEFYGPSGCGKTTLAIQIAAH-AQAGGLTCAWIDADRTFDA 88
>UniRef50_A6Q0W7 Cluster: Circadian clock protein KaiC; n=1;
Nitratiruptor sp. SB155-2|Rep: Circadian clock protein
KaiC - Nitratiruptor sp. (strain SB155-2)
Length = 462
Score = 39.9 bits (89), Expect = 0.069
Identities = 23/54 (42%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Frame = +1
Query: 406 IKSGVKNLDNMLNRGIPAKTITELCGIAGSGKTQLALQIAI-NCAKETHKTVLY 564
IKS + D M G+P + + G GSGKT +LQIA N KE KT+L+
Sbjct: 4 IKSYIFGFDEMSYGGLPKYSNIIIGGAPGSGKTTFSLQIAFENAKKEKKKTILF 57
>UniRef50_A4G1Y6 Cluster: Putative uncharacterized protein; n=1;
Herminiimonas arsenicoxydans|Rep: Putative
uncharacterized protein - Herminiimonas arsenicoxydans
Length = 480
Score = 39.9 bits (89), Expect = 0.069
Identities = 19/53 (35%), Positives = 29/53 (54%)
Frame = +1
Query: 406 IKSGVKNLDNMLNRGIPAKTITELCGIAGSGKTQLALQIAINCAKETHKTVLY 564
+ +GV LD++L G+P + L G GSGKT LA QI + A + + +
Sbjct: 10 LATGVPGLDDLLGGGLPEFSFNLLAGTPGSGKTTLAHQIMFSLANPDRRALFF 62
Score = 35.5 bits (78), Expect = 1.5
Identities = 23/59 (38%), Positives = 28/59 (47%)
Frame = +1
Query: 343 FSAPVINGSCFIDKIRKGTISIKSGVKNLDNMLNRGIPAKTITELCGIAGSGKTQLALQ 519
F +I S D G + GV LD M+ G+PA L G +GSGKT LA Q
Sbjct: 230 FPRALIKSSTTGDIRISGDKRLSMGVPALDEMMGGGLPAGYSLLLVGPSGSGKTVLATQ 288
>UniRef50_Q0W7N5 Cluster: Predicted ATPase; n=1; uncultured
methanogenic archaeon RC-I|Rep: Predicted ATPase -
Uncultured methanogenic archaeon RC-I
Length = 491
Score = 39.9 bits (89), Expect = 0.069
Identities = 22/60 (36%), Positives = 34/60 (56%)
Frame = +1
Query: 394 GTISIKSGVKNLDNMLNRGIPAKTITELCGIAGSGKTQLALQIAINCAKETHKTVLYIDT 573
G ++ +G++ LD +L G+P + L G G+GKT LALQ A A + VL++ T
Sbjct: 14 GKDTVTTGIEGLDELLCGGLPKGSTVLLSGPPGAGKTVLALQYAFYHASRGER-VLFVST 72
>UniRef50_Q384W8 Cluster: Putative uncharacterized protein; n=1;
Trypanosoma brucei|Rep: Putative uncharacterized protein
- Trypanosoma brucei
Length = 423
Score = 39.5 bits (88), Expect = 0.092
Identities = 38/130 (29%), Positives = 62/130 (47%), Gaps = 2/130 (1%)
Frame = +1
Query: 142 MRCVLIKMQKLTHVEGTALTDHVIKMLFQSR--IITILDFLQEDVEKLSNICKLSIPQIL 315
M V + ++KL + G + +L Q + +LD +DVE L +I +
Sbjct: 53 MERVQVMLKKLEGLPGYGNGTRLENVLLQPPCDVSQMLDASLDDVELLYRHISHTI--VN 110
Query: 316 EARNRILTKFSAPVINGSCFIDKIRKGTISIKSGVKNLDNMLNRGIPAKTITELCGIAGS 495
+ +L ++ SCF G IS +G K LD++L G+ +TE+ G +G+
Sbjct: 111 SPDSTLLPISVEDQLSSSCF------GVIS--TGHKCLDDVLAGGVKCGLVTEITGASGT 162
Query: 496 GKTQLALQIA 525
GKT LAL +A
Sbjct: 163 GKTALALNLA 172
>UniRef50_Q74ZR1 Cluster: AGR137Wp; n=1; Eremothecium gossypii|Rep:
AGR137Wp - Ashbya gossypii (Yeast) (Eremothecium
gossypii)
Length = 503
Score = 39.5 bits (88), Expect = 0.092
Identities = 22/63 (34%), Positives = 36/63 (57%)
Frame = +1
Query: 385 IRKGTISIKSGVKNLDNMLNRGIPAKTITELCGIAGSGKTQLALQIAINCAKETHKTVLY 564
+++G + +G+ LD+ L G+ ++I E+ G G GKT LQ+ I C + K VL
Sbjct: 11 LQEGAEPLTTGIPQLDDALGAGLDPRSIYEVFGPPGIGKTLFGLQV-IRCNR--GKRVLV 67
Query: 565 IDT 573
+DT
Sbjct: 68 VDT 70
>UniRef50_A6RPX0 Cluster: Putative uncharacterized protein; n=2;
Botryotinia fuckeliana B05.10|Rep: Putative
uncharacterized protein - Botryotinia fuckeliana B05.10
Length = 485
Score = 39.5 bits (88), Expect = 0.092
Identities = 23/67 (34%), Positives = 35/67 (52%), Gaps = 4/67 (5%)
Frame = +1
Query: 424 NLDNMLNRGIPAKTITELCGIAGSGKTQLALQIAINC-AKETH---KTVLYIDTKGDFSA 591
++D L GIPA ITE+ G +G+GKTQ L + ++ H LYI T+
Sbjct: 115 DMDRALGGGIPAGYITEVTGESGAGKTQFLLTLLLSAQLPAPHGLASPTLYISTESSLPI 174
Query: 592 LRIQKIL 612
R+ ++L
Sbjct: 175 TRLSQLL 181
>UniRef50_A6QWV8 Cluster: Predicted protein; n=1; Ajellomyces
capsulatus NAm1|Rep: Predicted protein - Ajellomyces
capsulatus NAm1
Length = 587
Score = 39.5 bits (88), Expect = 0.092
Identities = 22/68 (32%), Positives = 36/68 (52%), Gaps = 4/68 (5%)
Frame = +1
Query: 427 LDNMLNRGIPAKTITELCGIAGSGKTQLALQIAINCAKE----THKTVLYIDTKGDFSAL 594
LD +L GI +TEL G +G GKTQ L + ++ T + LY+ T+ +
Sbjct: 118 LDRVLAGGISTGYVTELAGESGCGKTQFLLHLLLSVQLPPPYGTSQKALYLSTESNLPTN 177
Query: 595 RIQKILEK 618
R+ ++LE+
Sbjct: 178 RLSQLLEE 185
>UniRef50_Q0W053 Cluster: Putative ATPase; n=1; uncultured
methanogenic archaeon RC-I|Rep: Putative ATPase -
Uncultured methanogenic archaeon RC-I
Length = 254
Score = 39.5 bits (88), Expect = 0.092
Identities = 24/56 (42%), Positives = 32/56 (57%)
Frame = +1
Query: 406 IKSGVKNLDNMLNRGIPAKTITELCGIAGSGKTQLALQIAINCAKETHKTVLYIDT 573
+K+GV LD +L+ G + + G GSGKT LALQ A A+ K VLY+ T
Sbjct: 13 VKTGVDGLDILLSGGFVKGSTILISGSYGSGKTLLALQYAFYQAQRGDK-VLYVST 67
>UniRef50_Q8EVC7 Cluster: Protein recA; n=2; Mycoplasma|Rep: Protein
recA - Mycoplasma penetrans
Length = 329
Score = 39.5 bits (88), Expect = 0.092
Identities = 26/58 (44%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Frame = +1
Query: 406 IKSGVKNLDNMLN-RGIPAKTITELCGIAGSGKTQLALQIAINCAKETHKTVLYIDTK 576
IKSG LDN + G P I E+ G SGKT +ALQ C KE +V YID +
Sbjct: 37 IKSGSILLDNAIGVGGYPKGKIIEIYGNESSGKTTIALQCVKECIKE-GGSVAYIDAE 93
>UniRef50_Q08YR0 Cluster: Putative uncharacterized protein; n=1;
Stigmatella aurantiaca DW4/3-1|Rep: Putative
uncharacterized protein - Stigmatella aurantiaca DW4/3-1
Length = 429
Score = 39.1 bits (87), Expect = 0.12
Identities = 21/45 (46%), Positives = 27/45 (60%)
Frame = +1
Query: 406 IKSGVKNLDNMLNRGIPAKTITELCGIAGSGKTQLALQIAINCAK 540
+ +GVK LD ML G+ A + T + G GSGKT LALQ + K
Sbjct: 214 LATGVKGLDTMLQGGVWAGSSTLIEGRTGSGKTTLALQFILEGLK 258
>UniRef50_Q5ULN8 Cluster: Orf76; n=1; Lactobacillus phage LP65|Rep:
Orf76 - Lactobacillus phage LP65
Length = 496
Score = 39.1 bits (87), Expect = 0.12
Identities = 20/58 (34%), Positives = 31/58 (53%)
Frame = +1
Query: 406 IKSGVKNLDNMLNRGIPAKTITELCGIAGSGKTQLALQIAINCAKETHKTVLYIDTKG 579
IKSG+ LD L G+ I +CG +G GKT + +A + ++ VLY+ +G
Sbjct: 186 IKSGLSTLDIALKGGLQPGEIGLICGASGFGKTAILTNLAAYYSLVSNNNVLYVYLEG 243
>UniRef50_P74646 Cluster: Circadian clock protein kinase kaiC; n=89;
Bacteria|Rep: Circadian clock protein kinase kaiC -
Synechocystis sp. (strain PCC 6803)
Length = 519
Score = 39.1 bits (87), Expect = 0.12
Identities = 19/56 (33%), Positives = 32/56 (57%)
Frame = +1
Query: 352 PVINGSCFIDKIRKGTISIKSGVKNLDNMLNRGIPAKTITELCGIAGSGKTQLALQ 519
P++N D RKG I++ ++ D + + G+P T + G +G+GKT LA+Q
Sbjct: 4 PIVNERNRPDVPRKGVQKIRTVIEGFDEITHGGLPIGRTTLVSGTSGTGKTLLAVQ 59
>UniRef50_UPI000023E7C1 Cluster: hypothetical protein FG00844.1;
n=1; Gibberella zeae PH-1|Rep: hypothetical protein
FG00844.1 - Gibberella zeae PH-1
Length = 445
Score = 38.7 bits (86), Expect = 0.16
Identities = 21/67 (31%), Positives = 35/67 (52%), Gaps = 4/67 (5%)
Frame = +1
Query: 427 LDNMLNRGIPAKTITELCGIAGSGKTQ----LALQIAINCAKETHKTVLYIDTKGDFSAL 594
LD +L G+P +TE G +G+GKTQ L L + + + LYI T+ +
Sbjct: 96 LDAILGGGVPVGAVTEFTGESGAGKTQALLSLCLAVQLPSPHGLGREALYISTEATMATS 155
Query: 595 RIQKILE 615
R+ ++L+
Sbjct: 156 RLAQMLK 162
>UniRef50_A5HL42 Cluster: DNA primase/helicase; n=1; Phormidium
phage Pf-WMP3|Rep: DNA primase/helicase - Phormidium
phage Pf-WMP3
Length = 682
Score = 38.7 bits (86), Expect = 0.16
Identities = 24/63 (38%), Positives = 37/63 (58%), Gaps = 4/63 (6%)
Frame = +1
Query: 400 ISIKSGVKNLDNMLNRGIPAKTITELCGIAGS---GKTQLALQIAINCAKETHK-TVLYI 567
+S +G +L++ML G+ +TELCG+ G GK+Q A Q+A N A+ +LYI
Sbjct: 220 VSYDTGFASLNSMLGGGLH---VTELCGLVGHTGRGKSQFAAQVAYNLAEHNEDLKMLYI 276
Query: 568 DTK 576
T+
Sbjct: 277 CTE 279
>UniRef50_A7E7I5 Cluster: Putative uncharacterized protein; n=1;
Sclerotinia sclerotiorum 1980|Rep: Putative
uncharacterized protein - Sclerotinia sclerotiorum 1980
Length = 493
Score = 38.7 bits (86), Expect = 0.16
Identities = 22/67 (32%), Positives = 33/67 (49%), Gaps = 4/67 (5%)
Frame = +1
Query: 424 NLDNMLNRGIPAKTITELCGIAGSGKTQLALQIAINCAKET----HKTVLYIDTKGDFSA 591
++D L GIP ITE+ G +G+GKTQ L + ++ LYI T+
Sbjct: 115 DMDRALGGGIPTGYITEITGESGAGKTQFLLTLLLSAQLPAPYGLTAPTLYISTESSLPT 174
Query: 592 LRIQKIL 612
R+ +IL
Sbjct: 175 TRLSQIL 181
>UniRef50_Q89T73 Cluster: Protein recA; n=9; Bacteria|Rep: Protein
recA - Bradyrhizobium japonicum
Length = 506
Score = 38.3 bits (85), Expect = 0.21
Identities = 21/58 (36%), Positives = 30/58 (51%)
Frame = +1
Query: 406 IKSGVKNLDNMLNRGIPAKTITELCGIAGSGKTQLALQIAINCAKETHKTVLYIDTKG 579
+ SG LD +L G+ T L G AG GK+ LAL AI A ++V++ +G
Sbjct: 257 VLSGNPELDTLLGGGLERGTNVLLIGAAGVGKSSLALTYAIAAAARNERSVIFAFDEG 314
>UniRef50_Q3LBT9 Cluster: Replicative DNA helicase dnaC; n=1;
Candidatus Phytoplasma solani|Rep: Replicative DNA
helicase dnaC - Candidatus Phytoplasma solani
Length = 244
Score = 38.3 bits (85), Expect = 0.21
Identities = 24/74 (32%), Positives = 35/74 (47%)
Frame = +1
Query: 331 ILTKFSAPVINGSCFIDKIRKGTISIKSGVKNLDNMLNRGIPAKTITELCGIAGSGKTQL 510
I TK P + + D I IK+G +NLD +++ G K + L G GKT
Sbjct: 136 ISTKTLIPSLRQNIINDNEDNQLIGIKTGFENLDELVS-GFKNKQLIILGARTGMGKTAF 194
Query: 511 ALQIAINCAKETHK 552
L +A+N K H+
Sbjct: 195 MLNLAVNITKIFHQ 208
>UniRef50_Q189H2 Cluster: Putative phage-related replicative
helicase; n=1; Clostridium difficile 630|Rep: Putative
phage-related replicative helicase - Clostridium
difficile (strain 630)
Length = 433
Score = 38.3 bits (85), Expect = 0.21
Identities = 22/56 (39%), Positives = 31/56 (55%)
Frame = +1
Query: 391 KGTISIKSGVKNLDNMLNRGIPAKTITELCGIAGSGKTQLALQIAINCAKETHKTV 558
K I K G+K LD + G+ +T + +G GKT LALQI +N K+ KT+
Sbjct: 162 KKDIGFKFGIKLLDTTIG-GLFKGELTTIAAKSGVGKTALALQIMLNSFKQGKKTL 216
>UniRef50_Q30L73 Cluster: Gp72; n=1; Listeria phage P100|Rep: Gp72 -
Listeria phage P100
Length = 414
Score = 38.3 bits (85), Expect = 0.21
Identities = 21/64 (32%), Positives = 35/64 (54%)
Frame = +1
Query: 418 VKNLDNMLNRGIPAKTITELCGIAGSGKTQLALQIAINCAKETHKTVLYIDTKGDFSALR 597
+ LD +L GIP +TE+ G SGK+ LA+ + A + V++IDT+G R
Sbjct: 42 IPQLDYILGGGIPFGRLTEIMGKNASGKSTLAVHLT-KVALQLDCKVIWIDTEGTADPSR 100
Query: 598 IQKI 609
+ ++
Sbjct: 101 LSQL 104
>UniRef50_Q1DNF7 Cluster: Putative uncharacterized protein; n=1;
Coccidioides immitis|Rep: Putative uncharacterized
protein - Coccidioides immitis
Length = 436
Score = 38.3 bits (85), Expect = 0.21
Identities = 18/55 (32%), Positives = 32/55 (58%)
Frame = +1
Query: 448 GIPAKTITELCGIAGSGKTQLALQIAINCAKETHKTVLYIDTKGDFSALRIQKIL 612
G+ +TEL G SGKT LA+ +A + + ++V+++DT G R++ +L
Sbjct: 84 GVQRGEVTELVGPRASGKTVLAMSLAAEVLR-SQRSVVWVDTAGPMCVSRLESLL 137
>UniRef50_Q5UXD0 Cluster: Circadian regulator; n=3;
Halobacteriaceae|Rep: Circadian regulator - Haloarcula
marismortui (Halobacterium marismortui)
Length = 389
Score = 38.3 bits (85), Expect = 0.21
Identities = 18/53 (33%), Positives = 28/53 (52%)
Frame = +1
Query: 361 NGSCFIDKIRKGTISIKSGVKNLDNMLNRGIPAKTITELCGIAGSGKTQLALQ 519
+GS F ++ + G++ LD M+ GIP + + G AG+GKT LQ
Sbjct: 148 SGSDFEEEFESDIPRVDIGIEGLDQMIQGGIPQRHLIVTIGSAGTGKTTFGLQ 200
>UniRef50_Q14565 Cluster: Meiotic recombination protein DMC1/LIM15
homolog; n=36; Fungi/Metazoa group|Rep: Meiotic
recombination protein DMC1/LIM15 homolog - Homo sapiens
(Human)
Length = 340
Score = 38.3 bits (85), Expect = 0.21
Identities = 38/144 (26%), Positives = 62/144 (43%), Gaps = 8/144 (5%)
Frame = +1
Query: 211 IKMLFQSRIITILDFLQEDVEKLSNICKLS---IPQILEARNRILTKFSAPVINGSCFID 381
IK L I TI L N+ LS + +I EA N+++ P +
Sbjct: 37 IKKLKSVGICTIKGIQMTTRRALCNVKGLSEAKVDKIKEAANKLIE----PGFLTAFEYS 92
Query: 382 KIRKGTISIKSGVKNLDNMLNRGIPAKTITELCGIAGSGKTQLALQIAI-----NCAKET 546
+ RK I +G + D +L GI + ITE G +GKTQL+ + +
Sbjct: 93 EKRKMVFHITTGSQEFDKLLGGGIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYP 152
Query: 547 HKTVLYIDTKGDFSALRIQKILEK 618
+++IDT+ F R++ I ++
Sbjct: 153 GGKIIFIDTENTFRPDRLRDIADR 176
>UniRef50_Q0YMC6 Cluster: ATPase; n=1; Geobacter sp. FRC-32|Rep:
ATPase - Geobacter sp. FRC-32
Length = 488
Score = 37.9 bits (84), Expect = 0.28
Identities = 19/61 (31%), Positives = 33/61 (54%)
Frame = +1
Query: 406 IKSGVKNLDNMLNRGIPAKTITELCGIAGSGKTQLALQIAINCAKETHKTVLYIDTKGDF 585
+ SG KNLD + + G+ + T + G +G+GKT +A A+ A+ +Y+ + D
Sbjct: 252 VDSGNKNLDLLFDGGLDRGSTTVIIGASGTGKTTIANLYAVAAARRGEHVAVYLFDETDE 311
Query: 586 S 588
S
Sbjct: 312 S 312
>UniRef50_Q08N73 Cluster: Protein recA; n=2; Cystobacterineae|Rep:
Protein recA - Stigmatella aurantiaca DW4/3-1
Length = 293
Score = 37.9 bits (84), Expect = 0.28
Identities = 20/62 (32%), Positives = 35/62 (56%), Gaps = 1/62 (1%)
Frame = +1
Query: 388 RKGTISIKSGVKNLDNML-NRGIPAKTITELCGIAGSGKTQLALQIAINCAKETHKTVLY 564
R ++++GV+ +D +L + G P ELCG SG+T LAL+ A+ A + + +
Sbjct: 28 RSALATLRTGVEEVDALLPSGGFPLGQALELCGEMASGRTSLALR-AVAAAHQERRLCAW 86
Query: 565 ID 570
+D
Sbjct: 87 VD 88
>UniRef50_A1WZ80 Cluster: Putative circadian clock protein, KaiC;
n=1; Halorhodospira halophila SL1|Rep: Putative
circadian clock protein, KaiC - Halorhodospira halophila
(strain DSM 244 / SL1) (Ectothiorhodospirahalophila
(strain DSM 244 / SL1))
Length = 484
Score = 37.9 bits (84), Expect = 0.28
Identities = 22/67 (32%), Positives = 36/67 (53%)
Frame = +1
Query: 361 NGSCFIDKIRKGTISIKSGVKNLDNMLNRGIPAKTITELCGIAGSGKTQLALQIAINCAK 540
N S I R+G + +G++ LD +L+ G+P T L G G+GKT +AL + +
Sbjct: 5 NSSAAIGARRRGAQTAPTGIEGLDFILDGGLPEGQPTLLRGGPGAGKTAIALTFFCHGLE 64
Query: 541 ETHKTVL 561
+ +VL
Sbjct: 65 QGEPSVL 71
>UniRef50_Q580V2 Cluster: DNA repair protein, putative; n=1;
Trypanosoma brucei|Rep: DNA repair protein, putative -
Trypanosoma brucei
Length = 477
Score = 37.9 bits (84), Expect = 0.28
Identities = 33/104 (31%), Positives = 46/104 (44%)
Frame = +1
Query: 223 FQSRIITILDFLQEDVEKLSNICKLSIPQILEARNRILTKFSAPVINGSCFIDKIRKGTI 402
F S +++ D L ++ KL L+ NR + F G +D++ GT
Sbjct: 120 FSSVSVSVSDMLATAAAWGNDSVKLEGLAPLQPTNRKVHFFPT----GCSLVDRLLAGTP 175
Query: 403 SIKSGVKNLDNMLNRGIPAKTITELCGIAGSGKTQLALQIAINC 534
S +G L G A +TE+ G AGSGKTQL LQ C
Sbjct: 176 SNATG-----GALEGGFCAGLLTEVHGEAGSGKTQLVLQCLFQC 214
>UniRef50_Q0W7M6 Cluster: Putative uncharacterized protein; n=1;
uncultured methanogenic archaeon RC-I|Rep: Putative
uncharacterized protein - Uncultured methanogenic
archaeon RC-I
Length = 289
Score = 37.9 bits (84), Expect = 0.28
Identities = 20/54 (37%), Positives = 31/54 (57%)
Frame = +1
Query: 406 IKSGVKNLDNMLNRGIPAKTITELCGIAGSGKTQLALQIAINCAKETHKTVLYI 567
+K+G+ LD++L+ G + T L G AG+GKT +ALQ + E +YI
Sbjct: 4 LKTGILGLDSLLDGGFNEHSATILVGSAGTGKTTMALQF-LRKGLENGSDAIYI 56
>UniRef50_Q9RVC4 Cluster: DNA repair protein radA; n=4;
Deinococci|Rep: DNA repair protein radA - Deinococcus
radiodurans
Length = 503
Score = 37.5 bits (83), Expect = 0.37
Identities = 22/64 (34%), Positives = 34/64 (53%)
Frame = +1
Query: 412 SGVKNLDNMLNRGIPAKTITELCGIAGSGKTQLALQIAINCAKETHKTVLYIDTKGDFSA 591
SG+ LD +L G+ A +T + G G GK+ L LQ+A A TVLY+ +
Sbjct: 134 SGIPELDRVLGGGLVAGGVTLIGGEPGIGKSTLLLQVADKVASR-GGTVLYVAGEESLEQ 192
Query: 592 LRIQ 603
+R++
Sbjct: 193 IRLR 196
>UniRef50_Q48N05 Cluster: Circadian oscillation regulator KaiC
homolog; n=12; Proteobacteria|Rep: Circadian oscillation
regulator KaiC homolog - Pseudomonas syringae pv.
phaseolicola (strain 1448A / Race 6)
Length = 515
Score = 37.5 bits (83), Expect = 0.37
Identities = 23/58 (39%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Frame = +1
Query: 406 IKSGVKNLDNMLNRGIPAKTITELCGIAGSGKTQLAL-QIAINCAKETHKTVLYIDTK 576
+ SGVK LD++L G T T + G AGSGKT + L +A CA+ T+ D +
Sbjct: 267 VPSGVKELDDLLVGGPLRGTSTLVTGPAGSGKTTVTLAYLAAACARGEKCTIYEFDER 324
Score = 34.7 bits (76), Expect = 2.6
Identities = 19/54 (35%), Positives = 30/54 (55%)
Frame = +1
Query: 406 IKSGVKNLDNMLNRGIPAKTITELCGIAGSGKTQLALQIAINCAKETHKTVLYI 567
+ +G D++L G+P + L G G+GKT L LQ ++ K ++VLYI
Sbjct: 24 VSTGNAGFDSILKGGLPNNRLYLLEGTPGAGKTTLGLQFLLDGVK-AGESVLYI 76
>UniRef50_Q4CYK4 Cluster: DNA repair protein, putative; n=2;
Trypanosoma cruzi|Rep: DNA repair protein, putative -
Trypanosoma cruzi
Length = 400
Score = 37.5 bits (83), Expect = 0.37
Identities = 19/49 (38%), Positives = 26/49 (53%)
Frame = +1
Query: 406 IKSGVKNLDNMLNRGIPAKTITELCGIAGSGKTQLALQIAINCAKETHK 552
I +G + LD L G+ ITE+ G G+GKT AL +A+ A K
Sbjct: 118 ISTGQECLDGALRGGLGCGLITEITGATGAGKTAFALNLAMRAASYPKK 166
>UniRef50_A4R1B5 Cluster: Putative uncharacterized protein; n=1;
Magnaporthe grisea|Rep: Putative uncharacterized protein
- Magnaporthe grisea (Rice blast fungus) (Pyricularia
grisea)
Length = 548
Score = 37.5 bits (83), Expect = 0.37
Identities = 23/66 (34%), Positives = 36/66 (54%), Gaps = 4/66 (6%)
Frame = +1
Query: 427 LDNMLNRGIPAKTITELCGIAGSGKTQ--LALQIAINCAKE--THKTVLYIDTKGDFSAL 594
LD L GIP +TE+ G +G+GKTQ L+L +A+ + +YI T+ S
Sbjct: 144 LDAALGGGIPTGYVTEITGESGAGKTQFLLSLLLAVQLPPPHGLGRKAMYIPTEAALSTR 203
Query: 595 RIQKIL 612
R+ ++L
Sbjct: 204 RVAQML 209
>UniRef50_Q12V32 Cluster: KaiC; n=1; Methanococcoides burtonii DSM
6242|Rep: KaiC - Methanococcoides burtonii (strain DSM
6242)
Length = 454
Score = 37.5 bits (83), Expect = 0.37
Identities = 22/74 (29%), Positives = 37/74 (50%)
Frame = +1
Query: 406 IKSGVKNLDNMLNRGIPAKTITELCGIAGSGKTQLALQIAINCAKETHKTVLYIDTKGDF 585
+ S + LD +L G P + + G AGSGKT LA+Q +I A E + +Y+ + +
Sbjct: 4 MSSEIDALDTILKGGFPKPSAILIAGPAGSGKTTLAMQ-SIFSASEKKEVCMYVTSLNE- 61
Query: 586 SALRIQKILEKCQY 627
+ K + K +
Sbjct: 62 PITMVNKFMSKLNF 75
>UniRef50_O14129 Cluster: DNA repair protein rhp55; n=1;
Schizosaccharomyces pombe|Rep: DNA repair protein rhp55
- Schizosaccharomyces pombe (Fission yeast)
Length = 350
Score = 37.5 bits (83), Expect = 0.37
Identities = 20/56 (35%), Positives = 33/56 (58%)
Frame = +1
Query: 448 GIPAKTITELCGIAGSGKTQLALQIAINCAKETHKTVLYIDTKGDFSALRIQKILE 615
G+ I+E+CG G GKT LALQI N A + V++++T R++++L+
Sbjct: 40 GLKRGYISEVCGAPGMGKTSLALQITAN-ALLSGSRVIWVETCQPIPMERLRQLLD 94
>UniRef50_Q1QT32 Cluster: Putative circadian clock protein, KaiC;
n=1; Chromohalobacter salexigens DSM 3043|Rep: Putative
circadian clock protein, KaiC - Chromohalobacter
salexigens (strain DSM 3043 / ATCC BAA-138 / NCIMB13768)
Length = 483
Score = 37.1 bits (82), Expect = 0.49
Identities = 18/50 (36%), Positives = 26/50 (52%)
Frame = +1
Query: 415 GVKNLDNMLNRGIPAKTITELCGIAGSGKTQLALQIAINCAKETHKTVLY 564
G+ LD + GI T+T + G G GKT L LQ A+ ++V+Y
Sbjct: 244 GIGELDRLSGGGITRGTVTIISGPTGVGKTSLGLQYMHEAARRGERSVVY 293
>UniRef50_Q1CXY6 Cluster: Putative uncharacterized protein; n=2;
Cystobacterineae|Rep: Putative uncharacterized protein -
Myxococcus xanthus (strain DK 1622)
Length = 500
Score = 37.1 bits (82), Expect = 0.49
Identities = 20/54 (37%), Positives = 28/54 (51%)
Frame = +1
Query: 406 IKSGVKNLDNMLNRGIPAKTITELCGIAGSGKTQLALQIAINCAKETHKTVLYI 567
I +G+ LD +L+ G L G+ GSGKT A Q+ + AK VLY+
Sbjct: 12 ISTGIPGLDTVLHGGFRKARTYMLMGLPGSGKTIFANQVCFHHAKRHGGRVLYL 65
>UniRef50_Q1JSB1 Cluster: Putative uncharacterized protein; n=1;
Toxoplasma gondii|Rep: Putative uncharacterized protein
- Toxoplasma gondii
Length = 481
Score = 37.1 bits (82), Expect = 0.49
Identities = 16/36 (44%), Positives = 23/36 (63%)
Frame = +1
Query: 415 GVKNLDNMLNRGIPAKTITELCGIAGSGKTQLALQI 522
G + +D+ LN G+P + E+ G AG GKTQ AL +
Sbjct: 100 GCRAVDHHLNGGVPRGMLVEISGKAGCGKTQFALSL 135
>UniRef50_A2BKD6 Cluster: Universally conserved protein; n=1;
Hyperthermus butylicus DSM 5456|Rep: Universally
conserved protein - Hyperthermus butylicus (strain DSM
5456 / JCM 9403)
Length = 250
Score = 37.1 bits (82), Expect = 0.49
Identities = 19/58 (32%), Positives = 34/58 (58%)
Frame = +1
Query: 394 GTISIKSGVKNLDNMLNRGIPAKTITELCGIAGSGKTQLALQIAINCAKETHKTVLYI 567
G ++K GV LD +L RGIP +++ + G +G+GK+ L Q+ + + V+Y+
Sbjct: 2 GEPNVKFGVPILDKLLPRGIPRRSLVIMVGDSGTGKS-LITQLMAGSFLQRGEKVIYV 58
>UniRef50_Q1VUX3 Cluster: Putative uncharacterized protein; n=3;
Flavobacteriaceae|Rep: Putative uncharacterized protein
- Psychroflexus torquis ATCC 700755
Length = 525
Score = 36.7 bits (81), Expect = 0.65
Identities = 24/82 (29%), Positives = 42/82 (51%), Gaps = 2/82 (2%)
Frame = +1
Query: 403 SIKSGVKNLDNMLNRGIPAKTITELCGIAGSGKTQLALQIAINCAKETHKTV--LYIDTK 576
+IK + +L NR I + G+AGSGKTQL I +K T+ + ++ D K
Sbjct: 173 NIKIRINDLREFDNRNIA------IAGMAGSGKTQLIKDILYQISKNTNNELKFIFFDYK 226
Query: 577 GDFSALRIQKILEKCQYSFKEV 642
G+ + +++ L+ Q F ++
Sbjct: 227 GEGNPEQLKPFLDATQCKFVDI 248
>UniRef50_Q4Z9W4 Cluster: ORF021; n=4; unclassified Myoviridae|Rep:
ORF021 - Staphylococcus phage G1
Length = 418
Score = 36.7 bits (81), Expect = 0.65
Identities = 20/68 (29%), Positives = 37/68 (54%)
Frame = +1
Query: 406 IKSGVKNLDNMLNRGIPAKTITELCGIAGSGKTQLALQIAINCAKETHKTVLYIDTKGDF 585
I + V D +L GIP +TE+ G+ GSGK+ A+ ++ A + ++ID +G
Sbjct: 41 IPTMVPQYDYILGGGIPLGRLTEVYGLTGSGKSTFAVHLS-RIATQLGVITIWIDIEGTA 99
Query: 586 SALRIQKI 609
R++++
Sbjct: 100 DNNRMEQL 107
>UniRef50_A0DFA4 Cluster: Chromosome undetermined scaffold_49, whole
genome shotgun sequence; n=1; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_49,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 256
Score = 36.7 bits (81), Expect = 0.65
Identities = 23/67 (34%), Positives = 35/67 (52%), Gaps = 2/67 (2%)
Frame = +1
Query: 433 NMLNRGIPAKTITELCGIAGSGKTQLALQIAINCAKETHKT--VLYIDTKGDFSALRIQK 606
++++ GI +TEL G AG GKT + + + IN +KT V+YI T R +
Sbjct: 31 SLISGGIQTGILTELYGEAGCGKTHVCMTLMINTI-INYKTSRVIYISTAKQLQQDRFNQ 89
Query: 607 ILEKCQY 627
+L K Y
Sbjct: 90 LLCKISY 96
>UniRef50_Q9V2A5 Cluster: RecA superfamily ATPase implicated in
signal transduction; n=4; Thermococcaceae|Rep: RecA
superfamily ATPase implicated in signal transduction -
Pyrococcus abyssi
Length = 251
Score = 36.7 bits (81), Expect = 0.65
Identities = 19/64 (29%), Positives = 31/64 (48%)
Frame = +1
Query: 406 IKSGVKNLDNMLNRGIPAKTITELCGIAGSGKTQLALQIAINCAKETHKTVLYIDTKGDF 585
+KSG+ D ++ G P T + G G+GKT A Q A+E + +++ +
Sbjct: 12 VKSGIPGFDELIEGGFPEGTTVLITGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEERA 71
Query: 586 SALR 597
S LR
Sbjct: 72 SDLR 75
>UniRef50_A7IAV9 Cluster: HTR-like protein; n=1; Candidatus
Methanoregula boonei 6A8|Rep: HTR-like protein -
Methanoregula boonei (strain 6A8)
Length = 275
Score = 36.7 bits (81), Expect = 0.65
Identities = 16/47 (34%), Positives = 27/47 (57%)
Frame = +1
Query: 412 SGVKNLDNMLNRGIPAKTITELCGIAGSGKTQLALQIAINCAKETHK 552
+G+ +LD +L+ G+P T+T L G G+G + A +N E H+
Sbjct: 11 TGIASLDPILDGGVPPGTLTLLFGDIGAGHYEFAYSSTVNSLAEMHR 57
>UniRef50_UPI00006DCE56 Cluster: hypothetical protein
CdifQ_04003639; n=1; Clostridium difficile
QCD-32g58|Rep: hypothetical protein CdifQ_04003639 -
Clostridium difficile QCD-32g58
Length = 411
Score = 36.3 bits (80), Expect = 0.85
Identities = 25/65 (38%), Positives = 38/65 (58%)
Frame = +1
Query: 406 IKSGVKNLDNMLNRGIPAKTITELCGIAGSGKTQLALQIAINCAKETHKTVLYIDTKGDF 585
IK+G+K LD+ + G+ +T + +G GKT LALQI N + K VL+I G+
Sbjct: 140 IKTGIKFLDDTIG-GLYGGELTTIAAKSGRGKTALALQILRNVIFQ-GKKVLFI--SGEM 195
Query: 586 SALRI 600
S ++I
Sbjct: 196 SDIQI 200
>UniRef50_UPI00005889FA Cluster: PREDICTED: similar to LOC553395
protein; n=2; Strongylocentrotus purpuratus|Rep:
PREDICTED: similar to LOC553395 protein -
Strongylocentrotus purpuratus
Length = 365
Score = 36.3 bits (80), Expect = 0.85
Identities = 24/61 (39%), Positives = 34/61 (55%), Gaps = 10/61 (16%)
Frame = +1
Query: 466 ITELCGIAGSGKTQLALQIAINC-AKETHKT---------VLYIDTKGDFSALRIQKILE 615
+ E+ G +GSGKT+L L +A C E KT V++IDT FS LR+ +LE
Sbjct: 34 VVEIYGNSGSGKTELLLNLAAMCILPERWKTIDIGGLGTSVVFIDTDHQFSMLRLFALLE 93
Query: 616 K 618
+
Sbjct: 94 R 94
>UniRef50_Q8F261 Cluster: DNA repair protein radA-like protein; n=4;
Leptospira|Rep: DNA repair protein radA-like protein -
Leptospira interrogans
Length = 459
Score = 36.3 bits (80), Expect = 0.85
Identities = 21/77 (27%), Positives = 45/77 (58%), Gaps = 1/77 (1%)
Frame = +1
Query: 376 IDKIRKGTIS-IKSGVKNLDNMLNRGIPAKTITELCGIAGSGKTQLALQIAINCAKETHK 552
+D++ + ++ + +G+K LD +L G+ ++T + G G GK+ L L+++ + +K
Sbjct: 62 LDRVEEESLKRMGTGLKELDLVLGGGLVPGSLTLIGGEPGVGKSTLILEVS-RYLTQANK 120
Query: 553 TVLYIDTKGDFSALRIQ 603
VLYI + S +R++
Sbjct: 121 NVLYISGEESPSQIRMR 137
>UniRef50_Q7D3Y2 Cluster: AGR_pAT_129p; n=4; Rhizobiaceae|Rep:
AGR_pAT_129p - Agrobacterium tumefaciens (strain C58 /
ATCC 33970)
Length = 504
Score = 36.3 bits (80), Expect = 0.85
Identities = 17/36 (47%), Positives = 22/36 (61%)
Frame = +1
Query: 412 SGVKNLDNMLNRGIPAKTITELCGIAGSGKTQLALQ 519
+G+ LD +L G+PA + L G GSGKT ALQ
Sbjct: 36 TGIAGLDEILRGGLPASNLYILQGAPGSGKTTAALQ 71
Score = 34.7 bits (76), Expect = 2.6
Identities = 19/54 (35%), Positives = 27/54 (50%)
Frame = +1
Query: 406 IKSGVKNLDNMLNRGIPAKTITELCGIAGSGKTQLALQIAINCAKETHKTVLYI 567
IKSGV LD M G A T T + G AG+GK+ ++ A + L++
Sbjct: 277 IKSGVAELDEMFGGGQEAGTTTLVIGQAGTGKSTMSSLYATAALERGENVALFL 330
>UniRef50_A5NQF2 Cluster: KaiC domain protein; n=1; Methylobacterium
sp. 4-46|Rep: KaiC domain protein - Methylobacterium sp.
4-46
Length = 501
Score = 36.3 bits (80), Expect = 0.85
Identities = 18/35 (51%), Positives = 22/35 (62%)
Frame = +1
Query: 415 GVKNLDNMLNRGIPAKTITELCGIAGSGKTQLALQ 519
GV LD ML+ G+P + T L G +G GKT L LQ
Sbjct: 261 GVPALDGMLDGGLPLHSTTLLAGPSGIGKTTLGLQ 295
>UniRef50_A7AT31 Cluster: Putative uncharacterized protein; n=1;
Babesia bovis|Rep: Putative uncharacterized protein -
Babesia bovis
Length = 274
Score = 36.3 bits (80), Expect = 0.85
Identities = 24/78 (30%), Positives = 38/78 (48%), Gaps = 5/78 (6%)
Frame = +1
Query: 397 TISIKSGVKNLDNMLNRGIPAKTITELCGIAGSGKTQLALQIAIN-----CAKETHKTVL 561
T SI G+ +D+ L + +TE+ G +GSGKTQ+AL + +++ +L
Sbjct: 10 TESISLGITEIDDALGDCLLLGMLTEIYGESGSGKTQVALTLVAEELVRMQEADSNDVML 69
Query: 562 YIDTKGDFSALRIQKILE 615
Y T F R I+E
Sbjct: 70 YFQTSRAFPMQRFCDIIE 87
>UniRef50_Q5JDZ8 Cluster: ATPase, RecA superfamily; n=1;
Thermococcus kodakarensis KOD1|Rep: ATPase, RecA
superfamily - Pyrococcus kodakaraensis (Thermococcus
kodakaraensis)
Length = 232
Score = 36.3 bits (80), Expect = 0.85
Identities = 24/58 (41%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
Frame = +1
Query: 397 TISIKSGVKNLDNMLNRG-IPAKTITELCGIAGSGKTQLALQIAINCAKETHKTVLYI 567
T I +G+ LD MLN G IP +T + G G+GKT LA+ A+ ++VLYI
Sbjct: 3 TARISTGIPGLDIMLNGGLIPGRTYL-VKGAPGTGKTTLAMHFAM-AGISNGESVLYI 58
>UniRef50_Q9FKM5 Cluster: DNA-repair protein XRCC3 homolog; n=18;
core eudicotyledons|Rep: DNA-repair protein XRCC3
homolog - Arabidopsis thaliana (Mouse-ear cress)
Length = 304
Score = 36.3 bits (80), Expect = 0.85
Identities = 16/41 (39%), Positives = 26/41 (63%)
Frame = +1
Query: 406 IKSGVKNLDNMLNRGIPAKTITELCGIAGSGKTQLALQIAI 528
+ +G + LD L GI ++TE+ +G GKTQL LQ+++
Sbjct: 21 LTTGCEILDGCLRGGISCDSLTEIVAESGCGKTQLCLQLSL 61
>UniRef50_P73860 Cluster: KaiC-like protein 1; n=17; cellular
organisms|Rep: KaiC-like protein 1 - Synechocystis sp.
(strain PCC 6803)
Length = 568
Score = 36.3 bits (80), Expect = 0.85
Identities = 16/48 (33%), Positives = 25/48 (52%)
Frame = +1
Query: 400 ISIKSGVKNLDNMLNRGIPAKTITELCGIAGSGKTQLALQIAINCAKE 543
I +G++ D + N G+P T +CG AG GKT ++ + A E
Sbjct: 11 IKCPTGIQGFDEITNGGLPQGRPTLICGSAGCGKTLFGVEFLVRGAVE 58
>UniRef50_A7HJZ5 Cluster: DNA repair protein RadA; n=2;
Thermotogaceae|Rep: DNA repair protein RadA -
Fervidobacterium nodosum Rt17-B1
Length = 465
Score = 35.9 bits (79), Expect = 1.1
Identities = 19/56 (33%), Positives = 34/56 (60%), Gaps = 2/56 (3%)
Frame = +1
Query: 406 IKSGVKNLDNMLNRGIPAKTITELCGIAGSGKTQLALQIAINCAKETH--KTVLYI 567
IK+G+ ++D +L+ G+ + L G G GK+ +ALQI + A+ ++ K + YI
Sbjct: 76 IKTGINSIDELLSGGLIKGQVILLGGEPGVGKSTIALQICDSIARNSNNDKRIYYI 131
>UniRef50_A6LZR9 Cluster: AAA ATPase; n=8; Clostridium|Rep: AAA
ATPase - Clostridium beijerinckii NCIMB 8052
Length = 161
Score = 35.9 bits (79), Expect = 1.1
Identities = 22/51 (43%), Positives = 31/51 (60%)
Frame = +1
Query: 475 LCGIAGSGKTQLALQIAINCAKETHKTVLYIDTKGDFSALRIQKILEKCQY 627
LCG GSGKT +AL +A N K K V+Y+ + ++L+ Q IL+K Y
Sbjct: 25 LCGNPGSGKTHIALALANNFLKNNIK-VVYMPYRDVITSLK-QNILDKEYY 73
>UniRef50_A5D4Z4 Cluster: BioD-like N-terminal domain of
phosphotransacetylase; n=5; Peptococcaceae|Rep:
BioD-like N-terminal domain of phosphotransacetylase -
Pelotomaculum thermopropionicum SI
Length = 363
Score = 35.9 bits (79), Expect = 1.1
Identities = 19/40 (47%), Positives = 26/40 (65%)
Frame = +1
Query: 475 LCGIAGSGKTQLALQIAINCAKETHKTVLYIDTKGDFSAL 594
+ G+AGSGKT +AL IA+N KE ++ V Y G+ S L
Sbjct: 17 ITGVAGSGKTAIALGIALNLKKEGYR-VTYFKPVGNRSRL 55
>UniRef50_A7SD26 Cluster: Predicted protein; n=1; Nematostella
vectensis|Rep: Predicted protein - Nematostella
vectensis
Length = 264
Score = 35.9 bits (79), Expect = 1.1
Identities = 23/66 (34%), Positives = 34/66 (51%), Gaps = 10/66 (15%)
Frame = +1
Query: 448 GIPAKTITELCGIAGSGKTQLALQIAINC--AKETHK--------TVLYIDTKGDFSALR 597
GI A + E G G GKT++ L +A NC + H+ +V++IDT F LR
Sbjct: 26 GIKAGDVVEFYGKEGCGKTEMLLHLAANCIMPRSWHELYLGGKGVSVIFIDTDYHFQILR 85
Query: 598 IQKILE 615
+ I+E
Sbjct: 86 LIAIME 91
>UniRef50_Q6FM82 Cluster: Similar to sp|P38953 Saccharomyces
cerevisiae YDR076w RAD55 DNA repair protein; n=1;
Candida glabrata|Rep: Similar to sp|P38953 Saccharomyces
cerevisiae YDR076w RAD55 DNA repair protein - Candida
glabrata (Yeast) (Torulopsis glabrata)
Length = 337
Score = 35.9 bits (79), Expect = 1.1
Identities = 23/59 (38%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Frame = +1
Query: 406 IKSGVKNLDNMLNRGIPAKTITELCGIAGSGKTQLALQIAINCAKETHK-TVLYIDTKG 579
I +G+ LDN L+ G K+ E+ GI G GKT LA + +E VL+I T G
Sbjct: 18 ISTGLTALDNELDGGFRYKSSYEIYGIPGIGKTWLASETVKTYLQENDDGKVLWITTSG 76
>UniRef50_A6STQ0 Cluster: Putative uncharacterized protein; n=1;
Botryotinia fuckeliana B05.10|Rep: Putative
uncharacterized protein - Botryotinia fuckeliana B05.10
Length = 383
Score = 35.9 bits (79), Expect = 1.1
Identities = 18/57 (31%), Positives = 31/57 (54%)
Frame = +1
Query: 448 GIPAKTITELCGIAGSGKTQLALQIAINCAKETHKTVLYIDTKGDFSALRIQKILEK 618
GIP +TE+ G G GKT L + +A + ++ V+++D S R +IL++
Sbjct: 50 GIPRGKVTEIYGPPGVGKTTLGMHLAARVLHQ-NENVVWVDASHPISGPRFSQILQE 105
>UniRef50_UPI0000DAE4B2 Cluster: hypothetical protein
Rgryl_01000436; n=1; Rickettsiella grylli|Rep:
hypothetical protein Rgryl_01000436 - Rickettsiella
grylli
Length = 2238
Score = 35.5 bits (78), Expect = 1.5
Identities = 20/40 (50%), Positives = 25/40 (62%), Gaps = 2/40 (5%)
Frame = +1
Query: 469 TELCGIAGSGKTQLALQIAINCAKETHKTVLYI--DTKGD 582
T L G+ G GKTQLAL+ A A+ V++I DTKGD
Sbjct: 647 TALSGLGGIGKTQLALRYAELYARHYDNNVIWINADTKGD 686
>UniRef50_Q57192 Cluster: L.oenos plasmid p4028 ORF1, ORF2, ORF3,
ORF4, ORF5 genes; n=1; Oenococcus oeni|Rep: L.oenos
plasmid p4028 ORF1, ORF2, ORF3, ORF4, ORF5 genes -
Oenococcus oeni (Leuconostoc oenos)
Length = 397
Score = 35.5 bits (78), Expect = 1.5
Identities = 30/75 (40%), Positives = 39/75 (52%), Gaps = 1/75 (1%)
Frame = +1
Query: 481 GIAGSGKTQLALQIAINCAKETHKTVLYIDTKGDFSALR-IQKILEKCQYSFKEVAAIMS 657
G +G+GKT L + AK TVLYID KGD + IQ+I ++ +F V I
Sbjct: 71 GTSGTGKTTAILSLIKQRAK-AGSTVLYIDGKGDQGTRKDIQRIAQEYGRNFIPV-DIND 128
Query: 658 RIHISYIWTMEELVN 702
I SY W +LVN
Sbjct: 129 PIQ-SYEWDPLKLVN 142
>UniRef50_Q54G98 Cluster: AAA ATPase domain-containing protein; n=1;
Dictyostelium discoideum AX4|Rep: AAA ATPase
domain-containing protein - Dictyostelium discoideum AX4
Length = 388
Score = 35.5 bits (78), Expect = 1.5
Identities = 21/58 (36%), Positives = 33/58 (56%), Gaps = 7/58 (12%)
Frame = +1
Query: 466 ITELCGIAGSGKTQLALQIAIN-----CA--KETHKTVLYIDTKGDFSALRIQKILEK 618
+ EL G +GSGKT++AL+I +N C K V+Y D F L+++ +L+K
Sbjct: 130 VIELYGPSGSGKTEMALEILVNSILPSCEPFKGNEIGVIYFDNDFKFDILKLEILLQK 187
>UniRef50_Q0V430 Cluster: Putative uncharacterized protein; n=1;
Phaeosphaeria nodorum|Rep: Putative uncharacterized
protein - Phaeosphaeria nodorum (Septoria nodorum)
Length = 551
Score = 35.5 bits (78), Expect = 1.5
Identities = 21/68 (30%), Positives = 35/68 (51%), Gaps = 4/68 (5%)
Frame = +1
Query: 421 KNLDNMLNRGIPAKTITELCGIAGSGKTQLALQIAINCAKE----THKTVLYIDTKGDFS 588
+ LD L GIP + E+ G +G+GKTQL L + + K+ +Y+ T+ S
Sbjct: 216 EELDAALGGGIPPGYLVEVTGESGAGKTQLLLTLLLAVQLPPPYGLAKSAVYVSTEAVLS 275
Query: 589 ALRIQKIL 612
R+ ++L
Sbjct: 276 TKRLAQLL 283
>UniRef50_Q5JES3 Cluster: ATPase, RecA superfamily; n=1;
Thermococcus kodakarensis KOD1|Rep: ATPase, RecA
superfamily - Pyrococcus kodakaraensis (Thermococcus
kodakaraensis)
Length = 237
Score = 35.5 bits (78), Expect = 1.5
Identities = 19/60 (31%), Positives = 28/60 (46%)
Frame = +1
Query: 373 FIDKIRKGTISIKSGVKNLDNMLNRGIPAKTITELCGIAGSGKTQLALQIAINCAKETHK 552
++ ++ K I SGV LD ++ G + + G GSGKT L +Q AK K
Sbjct: 2 YVGELLKNLDRIPSGVPGLDELIGGGFLPGRVYVVTGPPGSGKTTLGMQFLAEGAKNDEK 61
>UniRef50_Q12VV6 Cluster: KaiC; n=1; Methanococcoides burtonii DSM
6242|Rep: KaiC - Methanococcoides burtonii (strain DSM
6242)
Length = 459
Score = 35.5 bits (78), Expect = 1.5
Identities = 24/76 (31%), Positives = 40/76 (52%)
Frame = +1
Query: 418 VKNLDNMLNRGIPAKTITELCGIAGSGKTQLALQIAINCAKETHKTVLYIDTKGDFSALR 597
++ LD +L G + + + G AG GKT +ALQ+ N AK K VLYI ++ R
Sbjct: 11 IEGLDEILG-GFKSPSTILVAGTAGVGKTTMALQMLSNAAKSGEK-VLYIPLT-TVTSER 67
Query: 598 IQKILEKCQYSFKEVA 645
+K+ + F+ ++
Sbjct: 68 FEKLQAVFPFIFENIS 83
>UniRef50_Q566S1 Cluster: LOC553395 protein; n=4; Danio rerio|Rep:
LOC553395 protein - Danio rerio (Zebrafish) (Brachydanio
rerio)
Length = 299
Score = 35.1 bits (77), Expect = 2.0
Identities = 20/55 (36%), Positives = 26/55 (47%), Gaps = 5/55 (9%)
Frame = +1
Query: 466 ITELCGIAGSGKTQLALQIAINCAKETHK-----TVLYIDTKGDFSALRIQKILE 615
+ E G+ GSGKT+ + C TH V++IDT F LR ILE
Sbjct: 43 VVEFHGMEGSGKTETLYHLITRCLTPTHSGGLEVGVVFIDTDYHFDMLRFVSILE 97
>UniRef50_Q8C610 Cluster: Adult male testis cDNA, RIKEN full-length
enriched library, clone:4930447F14 product:disrupted
meiotic cDNA 1 homolog, full insert sequence; n=32;
Eukaryota|Rep: Adult male testis cDNA, RIKEN full-length
enriched library, clone:4930447F14 product:disrupted
meiotic cDNA 1 homolog, full insert sequence - Mus
musculus (Mouse)
Length = 285
Score = 35.1 bits (77), Expect = 2.0
Identities = 41/149 (27%), Positives = 62/149 (41%), Gaps = 8/149 (5%)
Frame = +1
Query: 211 IKMLFQSRIITILDFLQEDVEKLSNICKLS---IPQILEARNRILTKFSAPVINGSCFID 381
IK L I TI L N+ LS + +I EA N+++ P +
Sbjct: 37 IKKLKSVGICTIKGIQMTTRRALCNVKGLSEAKVEKIKEAANKLIE----PGFLTAFQYS 92
Query: 382 KIRKGTISIKSGVKNLDNMLNRGIPAKTITELCGIAGSGKTQLALQIAINCAKETHKTVL 561
+ RK I +G + D +L GI + ITE G +GKTQL+ + C + + +
Sbjct: 93 ERRKMVFHITTGSQEFDKLLGGGIESMAITEAFGEFRTGKTQLSHTL---CGEHQMELLD 149
Query: 562 YIDTK-----GDFSALRIQKILEKCQYSF 633
Y+ K G F L I I+ + F
Sbjct: 150 YVAAKFHEEAGIFKLLIIDSIMALFRVDF 178
>UniRef50_A6SQA9 Cluster: Putative uncharacterized protein; n=1;
Botryotinia fuckeliana B05.10|Rep: Putative
uncharacterized protein - Botryotinia fuckeliana B05.10
Length = 1052
Score = 35.1 bits (77), Expect = 2.0
Identities = 29/100 (29%), Positives = 50/100 (50%), Gaps = 5/100 (5%)
Frame = +1
Query: 331 ILTKFSAPVINGSCFIDKIRKGTISIKSGVKNLDNMLNRGIPAK----TITELCGIAGSG 498
I TK + + + D + + +S G K++ N + + A +I L G+ G G
Sbjct: 144 ITTKSGSSLSEQRSYFD-VPQSRVSHFVGRKDVLNRIQTALEASHNDPSIVVLTGVGGQG 202
Query: 499 KTQLALQIAINCAKETHKTVLYIDTKGDFSALR-IQKILE 615
KTQ+AL+ I+ + +K V +ID SA R ++IL+
Sbjct: 203 KTQIALEF-IHQHMKLYKGVFWIDASSQKSASRGFERILK 241
>UniRef50_A2BJC1 Cluster: RecA-like ATPase; n=1; Hyperthermus
butylicus DSM 5456|Rep: RecA-like ATPase - Hyperthermus
butylicus (strain DSM 5456 / JCM 9403)
Length = 497
Score = 35.1 bits (77), Expect = 2.0
Identities = 25/112 (22%), Positives = 50/112 (44%), Gaps = 6/112 (5%)
Frame = +1
Query: 403 SIKSGVKNLDNMLNRGIPAKTITELCGIAGSGKTQLALQIAINCAKETHKTVL--YIDTK 576
++ SG++ LD +L G P + L G G+GK+ A + + +++ +++ +
Sbjct: 17 TVPSGIEGLDKILLGGFPRGAVVLLAGNPGTGKSTFAARFVYEGCRRGERSIYLNFVEPR 76
Query: 577 GDF--SALRIQKILEKCQYS--FKEVAAIMSRIHISYIWTMEELVNLFKNLK 720
DF + E+C+ F + A+ + I +E+LV L K
Sbjct: 77 RDFYDHMTMLGMDFEECERKGLFHYMEAVTIADEDALITQLEDLVKLVMETK 128
>UniRef50_A3KGI2 Cluster: RAD51 homolog; n=1; Mus musculus|Rep:
RAD51 homolog - Mus musculus (Mouse)
Length = 178
Score = 34.7 bits (76), Expect = 2.6
Identities = 18/40 (45%), Positives = 23/40 (57%)
Frame = +1
Query: 388 RKGTISIKSGVKNLDNMLNRGIPAKTITELCGIAGSGKTQ 507
R I I +G K LD +L GI +ITE+ G +GKTQ
Sbjct: 139 RSEIIQITTGSKELDKLLQGGIETGSITEMFGEFRTGKTQ 178
>UniRef50_Q0HEC7 Cluster: KAP P-loop domain protein; n=3;
Shewanella|Rep: KAP P-loop domain protein - Shewanella
sp. (strain MR-4)
Length = 489
Score = 34.7 bits (76), Expect = 2.6
Identities = 22/63 (34%), Positives = 36/63 (57%), Gaps = 5/63 (7%)
Frame = +1
Query: 466 ITELCGIAGSGKTQLALQIAINCAKETHKTVLYIDT-KGDFS----ALRIQKILEKCQYS 630
+ L GI GSGKT+ ++ I AK H V+YID + DFS A+ +++++ ++
Sbjct: 43 VINLDGIYGSGKTEFIRRLYIELAKRNH-PVVYIDIWESDFSTNPLAVICSELIQQIEFI 101
Query: 631 FKE 639
KE
Sbjct: 102 LKE 104
>UniRef50_Q08XB9 Cluster: KaiC domain protein; n=1; Stigmatella
aurantiaca DW4/3-1|Rep: KaiC domain protein -
Stigmatella aurantiaca DW4/3-1
Length = 491
Score = 34.7 bits (76), Expect = 2.6
Identities = 17/48 (35%), Positives = 26/48 (54%)
Frame = +1
Query: 415 GVKNLDNMLNRGIPAKTITELCGIAGSGKTQLALQIAINCAKETHKTV 558
G+ D ++ G+P+ + T L G G GKT LA A A+E +T+
Sbjct: 249 GLTEFDALMEGGLPSLSTTLLAGSMGIGKTLLATHFAAQGAREGEQTL 296
>UniRef50_A5W1R9 Cluster: Non-specific serine/threonine protein
kinase; n=6; Proteobacteria|Rep: Non-specific
serine/threonine protein kinase - Pseudomonas putida F1
Length = 481
Score = 34.7 bits (76), Expect = 2.6
Identities = 18/46 (39%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Frame = +1
Query: 382 KIRKGTIS-IKSGVKNLDNMLNRGIPAKTITELCGIAGSGKTQLAL 516
++ GT++ I SGV D ML G+ +++ L G +G GKT L L
Sbjct: 234 QLGSGTLARISSGVPTFDEMLGGGLATGSVSLLMGPSGIGKTSLGL 279
>UniRef50_A5D488 Cluster: RecA-superfamily ATPase; n=1;
Pelotomaculum thermopropionicum SI|Rep: RecA-superfamily
ATPase - Pelotomaculum thermopropionicum SI
Length = 460
Score = 34.7 bits (76), Expect = 2.6
Identities = 15/38 (39%), Positives = 23/38 (60%)
Frame = +1
Query: 406 IKSGVKNLDNMLNRGIPAKTITELCGIAGSGKTQLALQ 519
+ +GV LDN+L G+P + G +G+GKT L +Q
Sbjct: 238 LHTGVPGLDNLLRGGLPRGACVTVVGGSGTGKTLLGMQ 275
>UniRef50_A4XK90 Cluster: Putative circadian clock protein, KaiC;
n=2; Bacteria|Rep: Putative circadian clock protein,
KaiC - Caldicellulosiruptor saccharolyticus (strain ATCC
43494 / DSM 8903)
Length = 298
Score = 34.7 bits (76), Expect = 2.6
Identities = 20/48 (41%), Positives = 30/48 (62%), Gaps = 2/48 (4%)
Frame = +1
Query: 448 GIPAKTITELCGIAGSGKTQLALQIAINCAKETHKTVLYI--DTKGDF 585
GIPA ++ L G+A +GK+ A Q A+ A E + +VLYI +T +F
Sbjct: 60 GIPAYSVINLSGVADTGKSLFAEQFAVTQANEGN-SVLYITVETPAEF 106
>UniRef50_Q871P4 Cluster: Related to ubiquitin-specific proteinase
UBP1; n=1; Neurospora crassa|Rep: Related to
ubiquitin-specific proteinase UBP1 - Neurospora crassa
Length = 755
Score = 34.7 bits (76), Expect = 2.6
Identities = 23/74 (31%), Positives = 37/74 (50%), Gaps = 4/74 (5%)
Frame = +1
Query: 145 RCVLIKMQ-KLTHVEGTALTDHVIKMLFQSRIITILDFLQEDV---EKLSNICKLSIPQI 312
RC L+KMQ K+ + G TD F+ R+ + + L+ED+ + L+ CK+ Q
Sbjct: 369 RCSLLKMQQKIKGLIGMVATDEARVSEFRERLAAVEEALEEDMLDDKTLAEKCKVPAKQR 428
Query: 313 LEARNRILTKFSAP 354
+E+ T S P
Sbjct: 429 VESTKTKQTAISRP 442
>UniRef50_O58001 Cluster: DNA repair and recombination protein radA
[Contains: Pho radA intein]; n=3; Pyrococcus|Rep: DNA
repair and recombination protein radA [Contains: Pho
radA intein] - Pyrococcus horikoshii
Length = 529
Score = 34.7 bits (76), Expect = 2.6
Identities = 18/40 (45%), Positives = 24/40 (60%)
Frame = +1
Query: 382 KIRKGTISIKSGVKNLDNMLNRGIPAKTITELCGIAGSGK 501
K R+ I +G K+LD +L GI + ITE+ G GSGK
Sbjct: 113 KKRESIGRISTGSKSLDKLLGGGIETQAITEVFGEFGSGK 152
>UniRef50_UPI00015BAB16 Cluster: putative circadian clock protein,
KaiC; n=1; Ignicoccus hospitalis KIN4/I|Rep: putative
circadian clock protein, KaiC - Ignicoccus hospitalis
KIN4/I
Length = 287
Score = 34.3 bits (75), Expect = 3.4
Identities = 16/59 (27%), Positives = 33/59 (55%)
Frame = +1
Query: 400 ISIKSGVKNLDNMLNRGIPAKTITELCGIAGSGKTQLALQIAINCAKETHKTVLYIDTK 576
+ +++GV+ D+++ GIP + + G G+GKT ++ A + K V+Y+ T+
Sbjct: 22 VRLRTGVEGFDDLIAGGIPKGFLVAVVGEPGTGKTVFSIHFAWKGVLDGQK-VIYVTTE 79
>UniRef50_UPI000067400A Cluster: hypothetical protein
Bpse4_03000170; n=1; Burkholderia pseudomallei 406e|Rep:
hypothetical protein Bpse4_03000170 - Burkholderia
pseudomallei 406e
Length = 386
Score = 34.3 bits (75), Expect = 3.4
Identities = 22/81 (27%), Positives = 42/81 (51%), Gaps = 2/81 (2%)
Frame = +1
Query: 328 RILTKFSAPVINGSCFIDKIRKGTIS--IKSGVKNLDNMLNRGIPAKTITELCGIAGSGK 501
+ + ++ PV+ ID +G S I +G ++LD+ L+ G+ A + + G G GK
Sbjct: 87 KFVNEYLVPVVEE---IDARARGEPSKVIPTGFRDLDDALDGGMNAGELIVIAGRPGMGK 143
Query: 502 TQLALQIAINCAKETHKTVLY 564
+ LAL + N A + +++
Sbjct: 144 SALALGVGANVAHRGNTVLVF 164
>UniRef50_Q4A748 Cluster: Chromosomal replication initiator protein
dnaA; n=1; Mycoplasma synoviae 53|Rep: Chromosomal
replication initiator protein dnaA - Mycoplasma synoviae
(strain 53)
Length = 456
Score = 34.3 bits (75), Expect = 3.4
Identities = 25/69 (36%), Positives = 36/69 (52%)
Frame = +1
Query: 361 NGSCFIDKIRKGTISIKSGVKNLDNMLNRGIPAKTITELCGIAGSGKTQLALQIAINCAK 540
N + D K T + + ++ L N LN I LCG +GSGK+ L IA N AK
Sbjct: 119 NKNYTFDNFFKSTFN-ELALEVLKNSLNETGEFNNIYFLCGKSGSGKSHLLSAIA-NEAK 176
Query: 541 ETHKTVLYI 567
+ +K+ +YI
Sbjct: 177 KQNKSCVYI 185
>UniRef50_A0YNR9 Cluster: DNA repair protein radA; n=3;
Cyanobacteria|Rep: DNA repair protein radA - Lyngbya sp.
PCC 8106
Length = 564
Score = 34.3 bits (75), Expect = 3.4
Identities = 20/68 (29%), Positives = 33/68 (48%)
Frame = +1
Query: 406 IKSGVKNLDNMLNRGIPAKTITELCGIAGSGKTQLALQIAINCAKETHKTVLYIDTKGDF 585
+ SG LD +L GI ++ + G G GK+ L LQ+A ++ T + + G
Sbjct: 87 MSSGYGELDRVLGGGIVPGSLVLIGGEPGIGKSTLLLQVANTLSQRTRVLYVSAEESGQQ 146
Query: 586 SALRIQKI 609
LR Q++
Sbjct: 147 VKLRSQRL 154
>UniRef50_A3FQA6 Cluster: Putative uncharacterized protein; n=2;
Cryptosporidium|Rep: Putative uncharacterized protein -
Cryptosporidium parvum Iowa II
Length = 304
Score = 34.3 bits (75), Expect = 3.4
Identities = 15/39 (38%), Positives = 23/39 (58%)
Frame = +1
Query: 406 IKSGVKNLDNMLNRGIPAKTITELCGIAGSGKTQLALQI 522
+ +G +D N GIP + + E+ G AG+GKTQ L +
Sbjct: 38 LSTGSNVVDKAFNGGIPKRILFEITGEAGTGKTQWCLTL 76
>UniRef50_Q5B8N2 Cluster: Putative uncharacterized protein; n=1;
Emericella nidulans|Rep: Putative uncharacterized
protein - Emericella nidulans (Aspergillus nidulans)
Length = 775
Score = 34.3 bits (75), Expect = 3.4
Identities = 22/60 (36%), Positives = 30/60 (50%)
Frame = +1
Query: 475 LCGIAGSGKTQLALQIAINCAKETHKTVLYIDTKGDFSALRIQKILEKCQYSFKEVAAIM 654
L G GSGKT LA QIA++ K V D G A +IQ IL ++K +++
Sbjct: 561 LNGPPGSGKTALAAQIALDSGAPFIKMVCPEDVAGYNEAAKIQHILRVFNDAYKSQTSVV 620
>UniRef50_Q9YE25 Cluster: Putative uncharacterized protein; n=1;
Aeropyrum pernix|Rep: Putative uncharacterized protein -
Aeropyrum pernix
Length = 723
Score = 34.3 bits (75), Expect = 3.4
Identities = 17/57 (29%), Positives = 31/57 (54%)
Frame = +1
Query: 406 IKSGVKNLDNMLNRGIPAKTITELCGIAGSGKTQLALQIAINCAKETHKTVLYIDTK 576
+++GV+ D ++ GIP + G G+GKT ++ A +E K V+Y+ T+
Sbjct: 4 LRTGVEGFDPLVAGGIPRGFFVAVVGEPGTGKTVFSIHFAYQGVREGDK-VIYVTTE 59
>UniRef50_Q5V5J9 Cluster: RecA/helicase-like; n=1; Haloarcula
marismortui|Rep: RecA/helicase-like - Haloarcula
marismortui (Halobacterium marismortui)
Length = 496
Score = 34.3 bits (75), Expect = 3.4
Identities = 16/52 (30%), Positives = 29/52 (55%)
Frame = +1
Query: 412 SGVKNLDNMLNRGIPAKTITELCGIAGSGKTQLALQIAINCAKETHKTVLYI 567
+GV LD++L+ G+ T+T L G +G GK+ A + + A + + Y+
Sbjct: 250 AGVPELDSLLDGGLERGTVTILSGPSGVGKSTTATEFLASAAADGSPALAYL 301
Score = 33.1 bits (72), Expect = 8.0
Identities = 20/64 (31%), Positives = 31/64 (48%)
Frame = +1
Query: 406 IKSGVKNLDNMLNRGIPAKTITELCGIAGSGKTQLALQIAINCAKETHKTVLYIDTKGDF 585
+ SG+ LD++L G+ + + G G+GKT L Q + E VL+I +
Sbjct: 11 LSSGISGLDSLLRGGLVEGRLYLVIGPPGTGKTLLGTQF-LEAGLEAGDDVLFIHAEESA 69
Query: 586 SALR 597
S LR
Sbjct: 70 SDLR 73
>UniRef50_O29896 Cluster: Putative uncharacterized protein; n=1;
Archaeoglobus fulgidus|Rep: Putative uncharacterized
protein - Archaeoglobus fulgidus
Length = 226
Score = 34.3 bits (75), Expect = 3.4
Identities = 16/37 (43%), Positives = 23/37 (62%)
Frame = +1
Query: 406 IKSGVKNLDNMLNRGIPAKTITELCGIAGSGKTQLAL 516
+K+G++ LD +L GIP I + G G+GKT L L
Sbjct: 2 LKTGIEGLDAILGGGIPEGHIVAVVGQYGTGKTTLGL 38
>UniRef50_UPI0000DAE56D Cluster: hypothetical protein
Rgryl_01000633; n=2; Rickettsiella grylli|Rep:
hypothetical protein Rgryl_01000633 - Rickettsiella
grylli
Length = 2413
Score = 33.9 bits (74), Expect = 4.6
Identities = 21/60 (35%), Positives = 34/60 (56%), Gaps = 1/60 (1%)
Frame = +1
Query: 400 ISIKSGVKNLDNM-LNRGIPAKTITELCGIAGSGKTQLALQIAINCAKETHKTVLYIDTK 576
+SI G + D++ L+ G ++ + G+ G GKTQLAL+ A A+ VL+ID +
Sbjct: 655 LSISPGFHSTDDLSLSHGSSGSQLS-ISGLGGIGKTQLALRYAELYAEHYDHNVLWIDAE 713
>UniRef50_Q6MRN7 Cluster: DnaB protein; n=1; Bdellovibrio
bacteriovorus|Rep: DnaB protein - Bdellovibrio
bacteriovorus
Length = 471
Score = 33.9 bits (74), Expect = 4.6
Identities = 21/79 (26%), Positives = 37/79 (46%)
Frame = +1
Query: 406 IKSGVKNLDNMLNRGIPAKTITELCGIAGSGKTQLALQIAINCAKETHKTVLYIDTKGDF 585
+ +G K LD M G+ A +T + GKT +L IA + A KTV Y +
Sbjct: 183 LATGFKKLDEM-TAGLHAGEMTIIAARPSMGKTAFSLNIAQHVALRLKKTVAYFSLEMGK 241
Query: 586 SALRIQKILEKCQYSFKEV 642
++ ++ + + + S E+
Sbjct: 242 ESMMMRMLSAESKVSMSEI 260
>UniRef50_Q4HNQ7 Cluster: Putative uncharacterized protein; n=1;
Campylobacter upsaliensis RM3195|Rep: Putative
uncharacterized protein - Campylobacter upsaliensis
RM3195
Length = 395
Score = 33.9 bits (74), Expect = 4.6
Identities = 20/59 (33%), Positives = 28/59 (47%)
Frame = +1
Query: 388 RKGTISIKSGVKNLDNMLNRGIPAKTITELCGIAGSGKTQLALQIAINCAKETHKTVLY 564
R+ IKSGV LD L+ G + + G GKT L LQ+ N ++ HK +
Sbjct: 139 REQNPQIKSGVSFLDQALDGGFEMAQLVLISGDPEMGKTSLCLQVIENISR-LHKVAFF 196
>UniRef50_Q01QX0 Cluster: RecA domain protein; n=1; Solibacter
usitatus Ellin6076|Rep: RecA domain protein - Solibacter
usitatus (strain Ellin6076)
Length = 224
Score = 33.9 bits (74), Expect = 4.6
Identities = 19/61 (31%), Positives = 33/61 (54%)
Frame = +1
Query: 406 IKSGVKNLDNMLNRGIPAKTITELCGIAGSGKTQLALQIAINCAKETHKTVLYIDTKGDF 585
+ +GV ++D+ G+P +TE+ G A SG+T L L I + A +T +D + F
Sbjct: 29 VPTGVADVDSATG-GLPRGCLTEIVGPASSGRTSLLLSI-LAAATARQETCALVDAEDAF 86
Query: 586 S 588
+
Sbjct: 87 A 87
>UniRef50_A5KMI4 Cluster: Putative uncharacterized protein; n=1;
Ruminococcus torques ATCC 27756|Rep: Putative
uncharacterized protein - Ruminococcus torques ATCC
27756
Length = 529
Score = 33.9 bits (74), Expect = 4.6
Identities = 25/80 (31%), Positives = 40/80 (50%), Gaps = 1/80 (1%)
Frame = +1
Query: 493 SGKTQLALQIAINCAKETHK-TVLYIDTKGDFSALRIQKILEKCQYSFKEVAAIMSRIHI 669
+G T+L L A+ +E K T +I + D +IQK+L++C+Y ++ M I
Sbjct: 164 TGGTELDLSGAVQILREKRKKTDRFIREEADKEERKIQKMLQECEYLEQD----MDEIQR 219
Query: 670 SYIWTMEELVNLFKNLKNGE 729
Y +E L K +KN E
Sbjct: 220 EYEERKQEWELLEKTIKNQE 239
>UniRef50_A4JVD4 Cluster: IcmO protein; n=2; Proteobacteria|Rep:
IcmO protein - Burkholderia vietnamiensis (strain G4 /
LMG 22486) (Burkholderiacepacia (strain R1808))
Length = 304
Score = 33.9 bits (74), Expect = 4.6
Identities = 22/80 (27%), Positives = 37/80 (46%)
Frame = +1
Query: 343 FSAPVINGSCFIDKIRKGTISIKSGVKNLDNMLNRGIPAKTITELCGIAGSGKTQLALQI 522
FSA +GS + ++ G + + + + + +T + G GSGKT+L L +
Sbjct: 109 FSAKRFDGSYAVPRLGNGITYLGKEISSKLEIWSSDSDLRTHMLVLGTTGSGKTELLLGL 168
Query: 523 AINCAKETHKTVLYIDTKGD 582
N A + +Y D KGD
Sbjct: 169 VFN-ALVQNSGFIYTDGKGD 187
>UniRef50_Q3IA99 Cluster: Disease resistance protein; n=1; Phaseolus
vulgaris|Rep: Disease resistance protein - Phaseolus
vulgaris (Kidney bean) (French bean)
Length = 753
Score = 33.9 bits (74), Expect = 4.6
Identities = 20/76 (26%), Positives = 34/76 (44%)
Frame = +1
Query: 391 KGTISIKSGVKNLDNMLNRGIPAKTITELCGIAGSGKTQLALQIAINCAKETHKTVLYID 570
+G I I+ + + ++L+ P I +CG+ G GKT + QI A + + L +D
Sbjct: 178 QGIIGIEKNIGGIQSLLHLESPDVRIIGICGMGGIGKTTICDQIYQKLALQFDSSSLVLD 237
Query: 571 TKGDFSALRIQKILEK 618
+ I I K
Sbjct: 238 VQDKIQRDGIDSIRTK 253
>UniRef50_A5K641 Cluster: Putative uncharacterized protein; n=2;
Plasmodium|Rep: Putative uncharacterized protein -
Plasmodium vivax
Length = 333
Score = 33.9 bits (74), Expect = 4.6
Identities = 20/70 (28%), Positives = 33/70 (47%), Gaps = 5/70 (7%)
Frame = +1
Query: 421 KNLDNMLNRGIPAKTITELCGIAGSGKTQLALQIAINCA-----KETHKTVLYIDTKGDF 585
K L+ G+ ++ E+ G+ GSGKTQ AL + +E V Y+ F
Sbjct: 35 KKLNRFFENGMLNYSLVEVVGVPGSGKTQFALTLCAELLLKMIDEERQAIVFYVYFNRMF 94
Query: 586 SALRIQKILE 615
R+++I+E
Sbjct: 95 PMRRLEEIIE 104
>UniRef50_A3FQK6 Cluster: Putative uncharacterized protein; n=1;
Cryptosporidium parvum Iowa II|Rep: Putative
uncharacterized protein - Cryptosporidium parvum Iowa II
Length = 133
Score = 33.9 bits (74), Expect = 4.6
Identities = 23/59 (38%), Positives = 32/59 (54%), Gaps = 6/59 (10%)
Frame = +1
Query: 451 IPAKTITELCGIAGSGKTQLALQIAINCAKETH-----KTVLYI-DTKGDFSALRIQKI 609
I K I ELCG+ GSGKT L +A+N +YI D++G FS R+++I
Sbjct: 6 IIGKGIIELCGVPGSGKTLLCKILALNIQIPKSIGGPGLNAIYIGDSEGGFSDNRLREI 64
>UniRef50_Q3IML2 Cluster: Probable KaiC-like transcriptional
regulator 3; n=3; Halobacteriaceae|Rep: Probable
KaiC-like transcriptional regulator 3 - Natronomonas
pharaonis (strain DSM 2160 / ATCC 35678)
Length = 231
Score = 33.9 bits (74), Expect = 4.6
Identities = 16/45 (35%), Positives = 24/45 (53%)
Frame = +1
Query: 406 IKSGVKNLDNMLNRGIPAKTITELCGIAGSGKTQLALQIAINCAK 540
+ SGV D+++ G P + L G GSGKT + Q ++ AK
Sbjct: 3 VSSGVAGFDDLVAGGFPVGRLYVLSGPPGSGKTTFSAQFLVDGAK 47
>UniRef50_Q2FNQ2 Cluster: Putative circadian clock protein, KaiC;
n=2; Methanomicrobiales|Rep: Putative circadian clock
protein, KaiC - Methanospirillum hungatei (strain JF-1 /
DSM 864)
Length = 237
Score = 33.9 bits (74), Expect = 4.6
Identities = 14/33 (42%), Positives = 21/33 (63%)
Frame = +1
Query: 415 GVKNLDNMLNRGIPAKTITELCGIAGSGKTQLA 513
G+K LD ML+ G+ T++ + G G+GKT A
Sbjct: 14 GIKGLDEMLSGGLIEGTVSSIIGAYGTGKTNFA 46
>UniRef50_P43705 Cluster: Protein recA; n=176; root|Rep: Protein
recA - Haemophilus influenzae
Length = 354
Score = 33.9 bits (74), Expect = 4.6
Identities = 23/59 (38%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Frame = +1
Query: 403 SIKSGVKNLDNMLN-RGIPAKTITELCGIAGSGKTQLALQIAINCAKETHKTVLYIDTK 576
SI +G LD L G+P I E+ G SGKT L L + I A++ KT +ID +
Sbjct: 40 SISTGSLGLDVALGIGGLPMGRIVEIFGPESSGKTTLTLSV-IAQAQKAGKTCAFIDAE 97
>UniRef50_Q5JET4 Cluster: DNA repair and recombination protein radA
[Contains: Pko radA intein]; n=12; Archaea|Rep: DNA
repair and recombination protein radA [Contains: Pko
radA intein] - Pyrococcus kodakaraensis (Thermococcus
kodakaraensis)
Length = 836
Score = 33.9 bits (74), Expect = 4.6
Identities = 19/39 (48%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
Frame = +1
Query: 388 RKGTIS-IKSGVKNLDNMLNRGIPAKTITELCGIAGSGK 501
R+ TI I +G K LD +L GI + ITE+ G GSGK
Sbjct: 111 RRTTIGKISTGSKALDKLLGGGIETQAITEVFGEFGSGK 149
>UniRef50_O66827 Cluster: DNA repair protein radA homolog; n=1;
Aquifex aeolicus|Rep: DNA repair protein radA homolog -
Aquifex aeolicus
Length = 444
Score = 33.9 bits (74), Expect = 4.6
Identities = 23/68 (33%), Positives = 36/68 (52%), Gaps = 2/68 (2%)
Frame = +1
Query: 412 SGVKNLDNMLNRGIPAKTITELCGIAGSGKTQLALQIAINCAKETHKTVLYI--DTKGDF 585
+G ++LDN L G+ + + G G GK+ L LQI+ A K VLY+ + G
Sbjct: 68 TGFESLDNALGGGLVKGQVILIAGEPGIGKSTLLLQISDRVA--NGKKVLYVSGEESGTQ 125
Query: 586 SALRIQKI 609
ALR +++
Sbjct: 126 IALRAKRL 133
>UniRef50_Q4S4D7 Cluster: Chromosome 2 SCAF14738, whole genome
shotgun sequence; n=1; Tetraodon nigroviridis|Rep:
Chromosome 2 SCAF14738, whole genome shotgun sequence -
Tetraodon nigroviridis (Green puffer)
Length = 353
Score = 33.5 bits (73), Expect = 6.0
Identities = 28/101 (27%), Positives = 44/101 (43%)
Frame = +1
Query: 211 IKMLFQSRIITILDFLQEDVEKLSNICKLSIPQILEARNRILTKFSAPVINGSCFIDKIR 390
IK + + I T+ + L NI LS ++ + + + S + K R
Sbjct: 20 IKKMKSAGICTVKGIQMTTRKALCNIKGLSEAKVDKIKEAAGKMLNVGFQTASEYSAK-R 78
Query: 391 KGTISIKSGVKNLDNMLNRGIPAKTITELCGIAGSGKTQLA 513
K I +G + D +L GI + ITE G +GKTQL+
Sbjct: 79 KHVFHITTGSQEFDKLLGGGIESMAITEAFGEFRTGKTQLS 119
>UniRef50_A3KGH9 Cluster: RAD51 homolog; n=13; Eukaryota|Rep: RAD51
homolog - Mus musculus (Mouse)
Length = 236
Score = 33.5 bits (73), Expect = 6.0
Identities = 20/64 (31%), Positives = 32/64 (50%), Gaps = 5/64 (7%)
Frame = +1
Query: 466 ITELCGIAGSGKTQLALQIAINCAKETHK-----TVLYIDTKGDFSALRIQKILEKCQYS 630
ITE+ G +GKTQ+ +A+ C + +YIDT+G F R+ + E+ S
Sbjct: 1 ITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGLS 60
Query: 631 FKEV 642
+V
Sbjct: 61 GSDV 64
>UniRef50_Q97J22 Cluster: UVRA-like protein, probably involved in
MDR transport; n=25; cellular organisms|Rep: UVRA-like
protein, probably involved in MDR transport -
Clostridium acetobutylicum
Length = 755
Score = 33.5 bits (73), Expect = 6.0
Identities = 22/56 (39%), Positives = 34/56 (60%), Gaps = 3/56 (5%)
Frame = +1
Query: 364 GSCFIDKIR--KGTISIK-SGVKNLDNMLNRGIPAKTITELCGIAGSGKTQLALQI 522
GS K+R KG +S+K + + NL N ++ IP +T + G+AGSGK+ L Q+
Sbjct: 447 GSQVKGKVREPKGWLSLKDANLHNLKN-ISVNIPIGVMTVVTGVAGSGKSTLISQV 501
>UniRef50_Q6MBT0 Cluster: Putative excinuclease ABC chain A; n=1;
Candidatus Protochlamydia amoebophila UWE25|Rep:
Putative excinuclease ABC chain A - Protochlamydia
amoebophila (strain UWE25)
Length = 937
Score = 33.5 bits (73), Expect = 6.0
Identities = 16/47 (34%), Positives = 24/47 (51%)
Frame = +1
Query: 382 KIRKGTISIKSGVKNLDNMLNRGIPAKTITELCGIAGSGKTQLALQI 522
KI++ + I+ N N + IP CG++GSGK+ L L I
Sbjct: 609 KIQQDWLEIRGATLNNLNDFSANIPLGCFVGFCGVSGSGKSTLVLDI 655
>UniRef50_A6LBI5 Cluster: Replicative DNA helicase; n=1;
Parabacteroides distasonis ATCC 8503|Rep: Replicative
DNA helicase - Parabacteroides distasonis (strain ATCC
8503 / DSM 20701 / NCTC11152)
Length = 484
Score = 33.5 bits (73), Expect = 6.0
Identities = 19/56 (33%), Positives = 28/56 (50%)
Frame = +1
Query: 397 TISIKSGVKNLDNMLNRGIPAKTITELCGIAGSGKTQLALQIAINCAKETHKTVLY 564
T I +G++ LD M +P T+ + GKT AL +A+N A+ H LY
Sbjct: 200 TPGIHTGLEGLDRMTGGMMPG-TLNVIAARPRVGKTAFALFMALNAARNGHPVCLY 254
>UniRef50_A4A535 Cluster: Exopolysaccharide biosynthesis protein;
n=1; Congregibacter litoralis KT71|Rep:
Exopolysaccharide biosynthesis protein - Congregibacter
litoralis KT71
Length = 360
Score = 33.5 bits (73), Expect = 6.0
Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Frame = +1
Query: 424 NLDNMLNRGIP-AKTITELCGIAGSGKTQLALQIAINCAKETHKTVLYID 570
N+ +R IP A + + G GKT ++ +A++ A E KTVL++D
Sbjct: 132 NIAGKSSRPIPYANLVMVTSALQGDGKTFSSINLALSIAMEQDKTVLFVD 181
>UniRef50_A2UBG3 Cluster: Cobyrinic acid a,c-diamide synthase; n=1;
Bacillus coagulans 36D1|Rep: Cobyrinic acid a,c-diamide
synthase - Bacillus coagulans 36D1
Length = 286
Score = 33.5 bits (73), Expect = 6.0
Identities = 14/42 (33%), Positives = 25/42 (59%)
Frame = +1
Query: 439 LNRGIPAKTITELCGIAGSGKTQLALQIAINCAKETHKTVLY 564
+ GIPAKT+ G G GK+ +++ +A+ A+ K +L+
Sbjct: 14 MQHGIPAKTLAVASGKGGVGKSNISVNLAMALAERGKKVLLF 55
>UniRef50_A0H0V2 Cluster: KaiC; n=1; Chloroflexus aggregans DSM
9485|Rep: KaiC - Chloroflexus aggregans DSM 9485
Length = 565
Score = 33.5 bits (73), Expect = 6.0
Identities = 16/62 (25%), Positives = 31/62 (50%)
Frame = +1
Query: 412 SGVKNLDNMLNRGIPAKTITELCGIAGSGKTQLALQIAINCAKETHKTVLYIDTKGDFSA 591
+G++ D + G+P T +CG G GKT A + ++ A + + L++ + +
Sbjct: 11 TGIRGFDEITGGGVPRGRPTLICGGPGCGKTLFAFETLVHGAAQHDEPGLFVSFEESPND 70
Query: 592 LR 597
LR
Sbjct: 71 LR 72
>UniRef50_Q555F1 Cluster: Putative uncharacterized protein; n=2;
Dictyostelium discoideum|Rep: Putative uncharacterized
protein - Dictyostelium discoideum AX4
Length = 458
Score = 33.5 bits (73), Expect = 6.0
Identities = 27/93 (29%), Positives = 45/93 (48%), Gaps = 1/93 (1%)
Frame = +1
Query: 265 DVEKLSNICKLSIPQILEARNRILTKFSAPVINGSCFIDKIRKGTISIKSGVKNLDNMLN 444
++EK +NI + IL+ R +I + N + K +I SG+ +LD L
Sbjct: 39 NIEKTNNINNNNNKNILKKRYKIKEEQYESYRNSWFDFEGFEK-IPTITSGITSLDYQLQ 97
Query: 445 -RGIPAKTITELCGIAGSGKTQLALQIAINCAK 540
G+P I E+ G + +GK+ L++ I N K
Sbjct: 98 IGGLPLNHIIEIYGDSSTGKSTLSMFILSNLIK 130
>UniRef50_Q4CWC1 Cluster: DNA repair protein, putative; n=3;
Trypanosoma cruzi|Rep: DNA repair protein, putative -
Trypanosoma cruzi
Length = 453
Score = 33.5 bits (73), Expect = 6.0
Identities = 15/32 (46%), Positives = 21/32 (65%)
Frame = +1
Query: 448 GIPAKTITELCGIAGSGKTQLALQIAINCAKE 543
G A ++E+ G AGSGKTQL LQ ++C +
Sbjct: 175 GFRAGFVSEVYGEAGSGKTQLVLQSLLHCVAQ 206
>UniRef50_Q4PC21 Cluster: Putative uncharacterized protein; n=1;
Ustilago maydis|Rep: Putative uncharacterized protein -
Ustilago maydis (Smut fungus)
Length = 857
Score = 33.5 bits (73), Expect = 6.0
Identities = 15/29 (51%), Positives = 21/29 (72%)
Frame = +1
Query: 442 NRGIPAKTITELCGIAGSGKTQLALQIAI 528
+RG+P+ +I E+ G GSGK+ L LQ AI
Sbjct: 350 DRGLPSGSILEVLGPPGSGKSSLLLQFAI 378
>UniRef50_Q8PZS8 Cluster: Flagella related protein FlaH; n=3;
Methanosarcina|Rep: Flagella related protein FlaH -
Methanosarcina mazei (Methanosarcina frisia)
Length = 264
Score = 33.5 bits (73), Expect = 6.0
Identities = 23/57 (40%), Positives = 31/57 (54%)
Frame = +1
Query: 406 IKSGVKNLDNMLNRGIPAKTITELCGIAGSGKTQLALQIAINCAKETHKTVLYIDTK 576
I SG +D L GIPA ++ L G SGK+ + LQ I A KTVL++ T+
Sbjct: 37 ISSGNLEIDRRLEGGIPAGSLCLLEGANDSGKS-IFLQQIIWGALNQDKTVLFLTTE 92
>UniRef50_Q39199 Cluster: DNA repair protein recA homolog 1,
chloroplast precursor; n=155; cellular organisms|Rep:
DNA repair protein recA homolog 1, chloroplast precursor
- Arabidopsis thaliana (Mouse-ear cress)
Length = 439
Score = 33.5 bits (73), Expect = 6.0
Identities = 20/61 (32%), Positives = 30/61 (49%)
Frame = +1
Query: 403 SIKSGVKNLDNMLNRGIPAKTITELCGIAGSGKTQLALQIAINCAKETHKTVLYIDTKGD 582
+ SG+ LD L G+P + E+ G SGKT LAL AI ++ + +D +
Sbjct: 116 TFSSGILTLDLALGGGLPKGRVVEIYGPESSGKTTLALH-AIAEVQKLGGNAMLVDAEHA 174
Query: 583 F 585
F
Sbjct: 175 F 175
>UniRef50_Q59486 Cluster: Protein recA, plasmid; n=2; Lactococcus
lactis|Rep: Protein recA, plasmid - Lactococcus lactis
subsp. lactis (Streptococcus lactis)
Length = 341
Score = 33.5 bits (73), Expect = 6.0
Identities = 29/90 (32%), Positives = 43/90 (47%), Gaps = 1/90 (1%)
Frame = +1
Query: 310 ILEARNRILTKFSAPVINGSCFIDKIRKGTISIKSGVKNLDNMLN-RGIPAKTITELCGI 486
IL+A I KF + I K + ++ SG+ +LD + G P + EL G
Sbjct: 24 ILKATQSIEKKFGSNTILNE--EGKASQHVQALPSGILSLDCAIGIGGYPKGRLIELFGA 81
Query: 487 AGSGKTQLALQIAINCAKETHKTVLYIDTK 576
SGKT +ALQ A+ ++ V YID +
Sbjct: 82 ESSGKTTVALQ-AVAETQKNGGYVAYIDAE 110
>UniRef50_P08098 Cluster: Mobilization protein A; n=6;
Enterobacteriaceae|Rep: Mobilization protein A -
Escherichia coli
Length = 529
Score = 33.5 bits (73), Expect = 6.0
Identities = 15/45 (33%), Positives = 25/45 (55%)
Frame = +1
Query: 460 KTITELCGIAGSGKTQLALQIAINCAKETHKTVLYIDTKGDFSAL 594
KT ++ G+ GSGK+ +A I ++ V+Y D +G +AL
Sbjct: 196 KTNIQILGLPGSGKSVMATNALIRSVRDFGDAVVYFDQRGPVAAL 240
>UniRef50_Q8EWP8 Cluster: Predicted cytoskeletal protein; n=1;
Mycoplasma penetrans|Rep: Predicted cytoskeletal protein
- Mycoplasma penetrans
Length = 3317
Score = 33.1 bits (72), Expect = 8.0
Identities = 21/81 (25%), Positives = 43/81 (53%)
Frame = +1
Query: 196 LTDHVIKMLFQSRIITILDFLQEDVEKLSNICKLSIPQILEARNRILTKFSAPVINGSCF 375
+ D +IK + +D L+E+++ ++ I L+ L +N+IL + A I+G C
Sbjct: 2553 IIDELIKPSDVASFKQKIDDLKEEIDNVNPI--LASVDKLNKKNQILDEIQA-YISGKCE 2609
Query: 376 IDKIRKGTISIKSGVKNLDNM 438
+ + + ++ VKN+DN+
Sbjct: 2610 ANSNDQNYLKVEESVKNIDNL 2630
>UniRef50_Q6LUG7 Cluster: DNA repair protein radA; n=7;
Proteobacteria|Rep: DNA repair protein radA -
Photobacterium profundum (Photobacterium sp. (strain
SS9))
Length = 459
Score = 33.1 bits (72), Expect = 8.0
Identities = 24/69 (34%), Positives = 37/69 (53%)
Frame = +1
Query: 412 SGVKNLDNMLNRGIPAKTITELCGIAGSGKTQLALQIAINCAKETHKTVLYIDTKGDFSA 591
SG+ D +L GI ++ LCG G+GK+ L LQ +I A K+ LY+ G+ S
Sbjct: 77 SGIGEFDRVLGGGIVPGSVLLLCGDPGAGKSTLLLQ-SIG-AVAAIKSALYV--SGEESI 132
Query: 592 LRIQKILEK 618
+I + E+
Sbjct: 133 HQISQRAER 141
>UniRef50_Q1PXH1 Cluster: Putative uncharacterized protein; n=1;
Candidatus Kuenenia stuttgartiensis|Rep: Putative
uncharacterized protein - Candidatus Kuenenia
stuttgartiensis
Length = 762
Score = 33.1 bits (72), Expect = 8.0
Identities = 25/70 (35%), Positives = 37/70 (52%)
Frame = +1
Query: 454 PAKTITELCGIAGSGKTQLALQIAINCAKETHKTVLYIDTKGDFSALRIQKILEKCQYSF 633
P++ I L GI GSGKT+L LQ I E K L++ + ++ IQ+I E+ F
Sbjct: 243 PSQGIILLHGITGSGKTELYLQ-TIAKLLEQGKKALFLVPEISLTSQSIQRIKER----F 297
Query: 634 KEVAAIMSRI 663
VA + S +
Sbjct: 298 NNVAVLHSHL 307
>UniRef50_A5ZGX7 Cluster: Putative uncharacterized protein; n=1;
Bacteroides caccae ATCC 43185|Rep: Putative
uncharacterized protein - Bacteroides caccae ATCC 43185
Length = 656
Score = 33.1 bits (72), Expect = 8.0
Identities = 14/29 (48%), Positives = 19/29 (65%)
Frame = +1
Query: 481 GIAGSGKTQLALQIAINCAKETHKTVLYI 567
G+AGSGKT + + A+N K TH VL +
Sbjct: 239 GVAGSGKTLVLAERAVNAHKRTHNCVLIL 267
>UniRef50_A7REW6 Cluster: Predicted protein; n=1; Nematostella
vectensis|Rep: Predicted protein - Nematostella
vectensis
Length = 666
Score = 33.1 bits (72), Expect = 8.0
Identities = 22/67 (32%), Positives = 36/67 (53%), Gaps = 3/67 (4%)
Frame = +1
Query: 202 DHVIKMLFQSRIITILD---FLQEDVEKLSNICKLSIPQILEARNRILTKFSAPVINGSC 372
D+V++ S I+D +ED+EK S + S + E +N +LTK P+I+
Sbjct: 504 DYVLEAYTDSYDDVIIDQPILTREDLEKESRAREESRHLLKELKNVLLTKSKDPLISHEG 563
Query: 373 FIDKIRK 393
F+D I+K
Sbjct: 564 FVDPIKK 570
>UniRef50_Q4JB87 Cluster: Conserved protein; n=7; Thermoprotei|Rep:
Conserved protein - Sulfolobus acidocaldarius
Length = 261
Score = 33.1 bits (72), Expect = 8.0
Identities = 18/59 (30%), Positives = 28/59 (47%)
Frame = +1
Query: 400 ISIKSGVKNLDNMLNRGIPAKTITELCGIAGSGKTQLALQIAINCAKETHKTVLYIDTK 576
I + +G+ D ++ GIP L G G+GKT +L KE + V Y+ T+
Sbjct: 2 IRLSTGIYEFDKLIEGGIPQGFFVALTGEPGTGKTIFSLHFVAQGLKEGNPCV-YVTTE 59
>UniRef50_Q3SA55 Cluster: ATPase RecA-superfamily; n=1; uncultured
euryarchaeote Alv-FOS4|Rep: ATPase RecA-superfamily -
uncultured euryarchaeote Alv-FOS4
Length = 293
Score = 33.1 bits (72), Expect = 8.0
Identities = 18/52 (34%), Positives = 28/52 (53%)
Frame = +1
Query: 412 SGVKNLDNMLNRGIPAKTITELCGIAGSGKTQLALQIAINCAKETHKTVLYI 567
SG+ LD ++ G KT + G +G+GKT A+Q ++ E + LYI
Sbjct: 7 SGIFGLDRLIEGGFRDKTANVIVGSSGTGKTTFAIQFIMH-GIENGEQGLYI 57
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 676,328,453
Number of Sequences: 1657284
Number of extensions: 12839611
Number of successful extensions: 31736
Number of sequences better than 10.0: 243
Number of HSP's better than 10.0 without gapping: 30701
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 31682
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 65438977305
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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