Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte2b12
(778 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC644.14c |rhp51|rad51|recombinase Rhp51|Schizosaccharomyces p... 50 5e-07
SPAC20H4.07 |rhp57||RecA family ATPase Rhp57|Schizosaccharomyces... 47 3e-06
SPAC8E11.03c |dmc1|dmp1|RecA family ATPase Dmc1|Schizosaccharomy... 42 1e-04
SPAC3C7.03c |rhp55||RecA family ATPase Rhp55|Schizosaccharomyces... 38 0.002
SPBC337.03 |||conserved eukaryotic protein|Schizosaccharomyces p... 31 0.14
SPBC16E9.05 |erg6||delta-sterol C-methyltransferase |Schizosacch... 27 2.3
SPBC902.02c |ctf18|chl12|DNA replication factor C complex subuni... 27 2.3
SPAC1F5.09c |shk2|pak2|PAK-related kinase Shk2 |Schizosaccharomy... 27 3.0
SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomy... 27 3.0
SPCC1827.03c |||acetyl-CoA ligase |Schizosaccharomyces pombe|chr... 26 5.2
SPCC830.11c |||adenylate kinase |Schizosaccharomyces pombe|chr 3... 26 6.9
>SPAC644.14c |rhp51|rad51|recombinase Rhp51|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 365
Score = 49.6 bits (113), Expect = 5e-07
Identities = 46/166 (27%), Positives = 77/166 (46%), Gaps = 9/166 (5%)
Frame = +1
Query: 172 LTHVEGTALTDHVIKMLFQSRIITILDFLQEDVEKLSNICKLSIPQILEAR-NRILTKFS 348
L +EG +T IK + ++ T+ +L L I I EA+ +++L + S
Sbjct: 47 LQMLEGNGITASDIKKIHEAGYYTVESIAYTPKRQL-----LLIKGISEAKADKLLGEAS 101
Query: 349 APVINGSCFIDKI---RKGTISIKSGVKNLDNMLNRGIPAKTITELCGIAGSGKTQLALQ 519
V G + R I+I +G K LD +L G+ +ITEL G +GK+Q+
Sbjct: 102 KLVPMGFTTATEYHIRRSELITITTGSKQLDTLLQGGVETGSITELFGEFRTGKSQICHT 161
Query: 520 IAINCAKET-----HKTVLYIDTKGDFSALRIQKILEKCQYSFKEV 642
+A+ C LYIDT+G F +R+ + ++ + +EV
Sbjct: 162 LAVTCQLPIDMGGGEGKCLYIDTEGTFRPVRLLAVADRYGLNGEEV 207
>SPAC20H4.07 |rhp57||RecA family ATPase Rhp57|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 354
Score = 47.2 bits (107), Expect = 3e-06
Identities = 38/147 (25%), Positives = 69/147 (46%), Gaps = 5/147 (3%)
Frame = +1
Query: 202 DHVIKMLFQSRIITILDFLQEDVEKLSNICKLSIPQILEARNRILTKFSAPVINGSCFID 381
D I F+ ++ +D L D+ +L S ++L+ +I + PV C
Sbjct: 13 DEKIASAFELGEVSTVDLLTLDITELERRTHCSQSELLQLIEQI-SLLLQPV---RCSAS 68
Query: 382 KIRKGTISIKSGVKNLDNMLNRGIPAKTITELCGIAGSGKTQLALQIAINCAKE-----T 546
K+ ++ +G LD L+ GIP +TE+CG +GSGK+Q +Q+ +
Sbjct: 69 KVTSKYLT--TGDVKLDETLHGGIPVGQLTEICGESGSGKSQFCMQLCLMVQLPLSLGGM 126
Query: 547 HKTVLYIDTKGDFSALRIQKILEKCQY 627
+K ++I T+ S L +++ E +Y
Sbjct: 127 NKAAVFISTE---SGLETKRLFELARY 150
>SPAC8E11.03c |dmc1|dmp1|RecA family ATPase Dmc1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 332
Score = 41.5 bits (93), Expect = 1e-04
Identities = 28/86 (32%), Positives = 44/86 (51%), Gaps = 5/86 (5%)
Frame = +1
Query: 376 IDKIRKGTISIKSGVKNLDNMLNRGIPAKTITELCGIAGSGKTQLALQIAINCAKE---- 543
I + RK SI +G + L+ +L GI + +ITE+ G GKTQ++ + +
Sbjct: 85 ISQNRKKVWSISTGSEALNGILGGGIQSMSITEVFGEFRCGKTQMSHTLCVTAQLPRDMG 144
Query: 544 -THKTVLYIDTKGDFSALRIQKILEK 618
V +IDT+G F RI+ I E+
Sbjct: 145 GAEGKVAFIDTEGTFRPDRIKAIAER 170
>SPAC3C7.03c |rhp55||RecA family ATPase Rhp55|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 350
Score = 37.5 bits (83), Expect = 0.002
Identities = 20/56 (35%), Positives = 33/56 (58%)
Frame = +1
Query: 448 GIPAKTITELCGIAGSGKTQLALQIAINCAKETHKTVLYIDTKGDFSALRIQKILE 615
G+ I+E+CG G GKT LALQI N A + V++++T R++++L+
Sbjct: 40 GLKRGYISEVCGAPGMGKTSLALQITAN-ALLSGSRVIWVETCQPIPMERLRQLLD 94
>SPBC337.03 |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 387
Score = 31.5 bits (68), Expect = 0.14
Identities = 16/70 (22%), Positives = 35/70 (50%)
Frame = +1
Query: 226 QSRIITILDFLQEDVEKLSNICKLSIPQILEARNRILTKFSAPVINGSCFIDKIRKGTIS 405
QS +LD ++ + K S CK + +E+R+ ++T + + + + + S
Sbjct: 183 QSDYSELLDNYKKQLNKASESCKGNYQACIESRSTLITSLESLIEEQKKLLSEEEESLKS 242
Query: 406 IKSGVKNLDN 435
++S + NL+N
Sbjct: 243 VESIISNLEN 252
>SPBC16E9.05 |erg6||delta-sterol C-methyltransferase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 378
Score = 27.5 bits (58), Expect = 2.3
Identities = 19/64 (29%), Positives = 27/64 (42%), Gaps = 2/64 (3%)
Frame = +1
Query: 400 ISIKSGVKNLDNMLNRGIPAKTITEL--CGIAGSGKTQLALQIAINCAKETHKTVLYIDT 573
+ IK G + LD G PA+ ITE C + G + N A + + +
Sbjct: 120 MGIKPGSRVLDVGCGVGGPAREITEFTGCNLVGLNNNDYQISRCNNYAVKRNLDKKQVFV 179
Query: 574 KGDF 585
KGDF
Sbjct: 180 KGDF 183
>SPBC902.02c |ctf18|chl12|DNA replication factor C complex subunit
Ctf18|Schizosaccharomyces pombe|chr 2|||Manual
Length = 960
Score = 27.5 bits (58), Expect = 2.3
Identities = 14/24 (58%), Positives = 16/24 (66%)
Frame = +1
Query: 454 PAKTITELCGIAGSGKTQLALQIA 525
P K I L G+AG+GKT LA IA
Sbjct: 414 PDKRIMMLTGLAGAGKTTLAHVIA 437
>SPAC1F5.09c |shk2|pak2|PAK-related kinase Shk2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 589
Score = 27.1 bits (57), Expect = 3.0
Identities = 14/35 (40%), Positives = 21/35 (60%)
Frame = +2
Query: 524 LLIVQKRLTKQCCILTPKGISQLLEFKRY*KNVNT 628
LL+ +TKQ C+ PK + Q L+F Y K ++T
Sbjct: 158 LLLQSSSITKQECMEEPKAVIQALDF--YSKQLDT 190
>SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1201
Score = 27.1 bits (57), Expect = 3.0
Identities = 14/61 (22%), Positives = 28/61 (45%)
Frame = +1
Query: 481 GIAGSGKTQLALQIAINCAKETHKTVLYIDTKGDFSALRIQKILEKCQYSFKEVAAIMSR 660
G G+GKT +A +A NC+ + K ++ D + + + + + F+E +
Sbjct: 413 GPPGTGKTLMARVLAANCSTKNQKISFFLRKGSDCLSKWVGEAERQLRLLFEEARRVQPS 472
Query: 661 I 663
I
Sbjct: 473 I 473
>SPCC1827.03c |||acetyl-CoA ligase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 512
Score = 26.2 bits (55), Expect = 5.2
Identities = 11/28 (39%), Positives = 19/28 (67%)
Frame = -1
Query: 748 PNYLLLILHSSGF*TSSPVLPLSKYSLC 665
P+ ++L+LH+SG V+PL+ +LC
Sbjct: 160 PDDVMLVLHTSGTTGRPKVVPLTHKNLC 187
>SPCC830.11c |||adenylate kinase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 175
Score = 25.8 bits (54), Expect = 6.9
Identities = 10/17 (58%), Positives = 13/17 (76%)
Frame = +1
Query: 475 LCGIAGSGKTQLALQIA 525
+CG G+GKT LA Q+A
Sbjct: 13 ICGTPGTGKTTLAEQVA 29
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,009,406
Number of Sequences: 5004
Number of extensions: 61773
Number of successful extensions: 192
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 171
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 190
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 375345278
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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