Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte2b12
         (778 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL023838-7|CAE47473.1|  357|Caenorhabditis elegans Hypothetical ...    46   4e-05
AL023838-6|CAB61038.2|  395|Caenorhabditis elegans Hypothetical ...    46   4e-05
AF061201-1|AAD10194.1|  357|Caenorhabditis elegans RAD51 short i...    46   4e-05
AB011382-1|BAA24982.1|  357|Caenorhabditis elegans RecA/Rad51/Dm...    46   4e-05
AC006830-2|AAK68611.2|  293|Caenorhabditis elegans Serpentine re...    28   6.5  
U58738-1|AAB00602.1|  290|Caenorhabditis elegans Hypothetical pr...    28   8.6  

>AL023838-7|CAE47473.1|  357|Caenorhabditis elegans Hypothetical
           protein Y43C5A.6b protein.
          Length = 357

 Score = 45.6 bits (103), Expect = 4e-05
 Identities = 33/111 (29%), Positives = 54/111 (48%), Gaps = 5/111 (4%)
 Frame = +1

Query: 388 RKGTISIKSGVKNLDNMLNRGIPAKTITELCGIAGSGKTQLALQIAINCAKET-----HK 552
           R   + I++G  +LD +L  GI   +ITE+ G   +GKTQL   +A+ C           
Sbjct: 112 RSQLVQIRTGSASLDRLLGGGIETGSITEVYGEYRTGKTQLCHSLAVLCQLPIDMGGGEG 171

Query: 553 TVLYIDTKGDFSALRIQKILEKCQYSFKEVAAIMSRIHISYIWTMEELVNL 705
             +YIDT   F   RI  I ++  Y+  + A ++  I ++  +  E L+ L
Sbjct: 172 KCMYIDTNATFRPERIIAIAQR--YNM-DSAHVLENIAVARAYNSEHLMAL 219


>AL023838-6|CAB61038.2|  395|Caenorhabditis elegans Hypothetical
           protein Y43C5A.6a protein.
          Length = 395

 Score = 45.6 bits (103), Expect = 4e-05
 Identities = 33/111 (29%), Positives = 54/111 (48%), Gaps = 5/111 (4%)
 Frame = +1

Query: 388 RKGTISIKSGVKNLDNMLNRGIPAKTITELCGIAGSGKTQLALQIAINCAKET-----HK 552
           R   + I++G  +LD +L  GI   +ITE+ G   +GKTQL   +A+ C           
Sbjct: 150 RSQLVQIRTGSASLDRLLGGGIETGSITEVYGEYRTGKTQLCHSLAVLCQLPIDMGGGEG 209

Query: 553 TVLYIDTKGDFSALRIQKILEKCQYSFKEVAAIMSRIHISYIWTMEELVNL 705
             +YIDT   F   RI  I ++  Y+  + A ++  I ++  +  E L+ L
Sbjct: 210 KCMYIDTNATFRPERIIAIAQR--YNM-DSAHVLENIAVARAYNSEHLMAL 257


>AF061201-1|AAD10194.1|  357|Caenorhabditis elegans RAD51 short
           isoform protein.
          Length = 357

 Score = 45.6 bits (103), Expect = 4e-05
 Identities = 33/111 (29%), Positives = 54/111 (48%), Gaps = 5/111 (4%)
 Frame = +1

Query: 388 RKGTISIKSGVKNLDNMLNRGIPAKTITELCGIAGSGKTQLALQIAINCAKET-----HK 552
           R   + I++G  +LD +L  GI   +ITE+ G   +GKTQL   +A+ C           
Sbjct: 112 RSQLVQIRTGSASLDRLLGGGIETGSITEVYGEYRTGKTQLCHSLAVLCQLPIDMGGGEG 171

Query: 553 TVLYIDTKGDFSALRIQKILEKCQYSFKEVAAIMSRIHISYIWTMEELVNL 705
             +YIDT   F   RI  I ++  Y+  + A ++  I ++  +  E L+ L
Sbjct: 172 KCMYIDTNATFRPERIIAIAQR--YNM-DSAHVLENIAVARAYNSEHLMAL 219


>AB011382-1|BAA24982.1|  357|Caenorhabditis elegans
           RecA/Rad51/Dmc1-like protein protein.
          Length = 357

 Score = 45.6 bits (103), Expect = 4e-05
 Identities = 33/111 (29%), Positives = 54/111 (48%), Gaps = 5/111 (4%)
 Frame = +1

Query: 388 RKGTISIKSGVKNLDNMLNRGIPAKTITELCGIAGSGKTQLALQIAINCAKET-----HK 552
           R   + I++G  +LD +L  GI   +ITE+ G   +GKTQL   +A+ C           
Sbjct: 112 RSQLVQIRTGSASLDRLLGGGIETGSITEVYGEYRTGKTQLCHSLAVLCQLPIDMGGGEG 171

Query: 553 TVLYIDTKGDFSALRIQKILEKCQYSFKEVAAIMSRIHISYIWTMEELVNL 705
             +YIDT   F   RI  I ++  Y+  + A ++  I ++  +  E L+ L
Sbjct: 172 KCMYIDTNATFRPERIIAIAQR--YNM-DSAHVLENIAVARAYNSEHLMAL 219


>AC006830-2|AAK68611.2|  293|Caenorhabditis elegans Serpentine
           receptor, class sx protein40 protein.
          Length = 293

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 20/67 (29%), Positives = 29/67 (43%)
 Frame = +1

Query: 100 FTFNGNRLRCNRTFMRCVLIKMQKLTHVEGTALTDHVIKMLFQSRIITILDFLQEDVEKL 279
           FT     L  +R    C  I+ + L H E   +   ++  +  +  I     LQ+D E  
Sbjct: 94  FTIMPLILTIDRIIATCTPIQYKNLKHCEVYYIGFLLVFPVIYALWILGFAILQQDTENS 153

Query: 280 SNICKLS 300
           SNIC LS
Sbjct: 154 SNICVLS 160


>U58738-1|AAB00602.1|  290|Caenorhabditis elegans Hypothetical
           protein F31A9.4 protein.
          Length = 290

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 16/64 (25%), Positives = 30/64 (46%)
 Frame = +1

Query: 256 LQEDVEKLSNICKLSIPQILEARNRILTKFSAPVINGSCFIDKIRKGTISIKSGVKNLDN 435
           + E ++  S + KL +    +  + I+T     V N + F DKIR   +      + L N
Sbjct: 145 ITEIIDSTSPLEKLELDWPFDFDHPIVTSAKLLVFNIATFFDKIRNTRVHFTYSKRTLRN 204

Query: 436 MLNR 447
           +++R
Sbjct: 205 LIHR 208


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,350,531
Number of Sequences: 27780
Number of extensions: 332902
Number of successful extensions: 771
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 741
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 771
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1872168044
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)