Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte2b11
         (712 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q9VV43 Cluster: TPPP family protein CG4893; n=8; Endopt...    83   9e-15
UniRef50_Q5TR29 Cluster: ENSANGP00000025926; n=1; Anopheles gamb...    43   0.009
UniRef50_O94811 Cluster: Tubulin polymerization-promoting protei...    37   0.43 
UniRef50_UPI0000DB72DA Cluster: PREDICTED: hypothetical protein;...    36   0.74 
UniRef50_P91127 Cluster: TPPP family protein C32E8.3; n=2; Caeno...    35   1.7  
UniRef50_A0KMP6 Cluster: Exonuclease SbcC; n=2; Aeromonas|Rep: E...    34   4.0  
UniRef50_Q4HH64 Cluster: Membrane protein, putative; n=1; Campyl...    33   5.2  
UniRef50_Q22551 Cluster: Groundhog (Hedgehog-like family) protei...    33   5.2  
UniRef50_A0YHU3 Cluster: Putative uncharacterized protein; n=1; ...    33   9.2  
UniRef50_Q4E554 Cluster: AAA ATPase, putative; n=2; Trypanosoma ...    33   9.2  

>UniRef50_Q9VV43 Cluster: TPPP family protein CG4893; n=8;
           Endopterygota|Rep: TPPP family protein CG4893 -
           Drosophila melanogaster (Fruit fly)
          Length = 192

 Score = 82.6 bits (195), Expect = 9e-15
 Identities = 39/49 (79%), Positives = 43/49 (87%)
 Frame = +3

Query: 561 GDPKSDGKAITLSQSDKWMKQAKVIDGKKITTTDTAIHFKKLKSVKLGI 707
           GD KSDGK ITLSQSDKWMKQAKVID KKITTTDT IHFKK K++K+ +
Sbjct: 48  GDSKSDGKLITLSQSDKWMKQAKVID-KKITTTDTGIHFKKFKAMKISL 95


>UniRef50_Q5TR29 Cluster: ENSANGP00000025926; n=1; Anopheles gambiae
           str. PEST|Rep: ENSANGP00000025926 - Anopheles gambiae
           str. PEST
          Length = 115

 Score = 42.7 bits (96), Expect = 0.009
 Identities = 21/47 (44%), Positives = 27/47 (57%)
 Frame = +3

Query: 570 KSDGKAITLSQSDKWMKQAKVIDGKKITTTDTAIHFKKLKSVKLGID 710
           + DGK I LSQSD WM+QA +I  K  T T T + F + +   L  D
Sbjct: 35  QGDGKRILLSQSDCWMQQANLIGPKHFTLTQTGLIFFEFRKSTLDYD 81


>UniRef50_O94811 Cluster: Tubulin polymerization-promoting protein;
           n=61; Euteleostomi|Rep: Tubulin polymerization-promoting
           protein - Homo sapiens (Human)
          Length = 219

 Score = 37.1 bits (82), Expect = 0.43
 Identities = 22/70 (31%), Positives = 33/70 (47%)
 Frame = +3

Query: 480 GASNGTSSKSEDNALXXXXXXXXXXXXGDPKSDGKAITLSQSDKWMKQAKVIDGKKITTT 659
           GA  G ++  E +AL            GD ++ G+ +      K  K  +VIDG+ +T T
Sbjct: 37  GAGEGAAASPELSALEEAFRRFAVH--GDARATGREMHGKNWSKLCKDCQVIDGRNVTVT 94

Query: 660 DTAIHFKKLK 689
           D  I F K+K
Sbjct: 95  DVDIVFSKIK 104


>UniRef50_UPI0000DB72DA Cluster: PREDICTED: hypothetical protein;
           n=1; Apis mellifera|Rep: PREDICTED: hypothetical protein
           - Apis mellifera
          Length = 91

 Score = 36.3 bits (80), Expect = 0.74
 Identities = 15/26 (57%), Positives = 20/26 (76%)
 Frame = +3

Query: 588 ITLSQSDKWMKQAKVIDGKKITTTDT 665
           I LSQSDKW+  A+++D   +TTTDT
Sbjct: 40  IPLSQSDKWLISARILDMVTLTTTDT 65


>UniRef50_P91127 Cluster: TPPP family protein C32E8.3; n=2;
           Caenorhabditis|Rep: TPPP family protein C32E8.3 -
           Caenorhabditis elegans
          Length = 180

 Score = 35.1 bits (77), Expect = 1.7
 Identities = 16/31 (51%), Positives = 19/31 (61%)
 Frame = +3

Query: 606 DKWMKQAKVIDGKKITTTDTAIHFKKLKSVK 698
           DKW+K A V+D K IT T T I F K+   K
Sbjct: 38  DKWLKDAGVLDNKAITGTMTGIAFSKVTGPK 68


>UniRef50_A0KMP6 Cluster: Exonuclease SbcC; n=2; Aeromonas|Rep:
           Exonuclease SbcC - Aeromonas hydrophila subsp.
           hydrophila (strain ATCC 7966 / NCIB 9240)
          Length = 1251

 Score = 33.9 bits (74), Expect = 4.0
 Identities = 23/76 (30%), Positives = 40/76 (52%), Gaps = 3/76 (3%)
 Frame = +3

Query: 225 WSSFRRASIKQQGKATAG-SISAATKSASLKRLSATDSLA*YMISSHKYIKHL*RKMSTE 401
           W  FRRA I  QG+  A    SA  +SA L+R++ T+  +   I +H+  +   +K++  
Sbjct: 162 WEQFRRAVILPQGEFAAFLKSSADERSALLERMTGTELYSAISIQTHERAREEQQKLAAI 221

Query: 402 AQNTD--AAVEQVTQE 443
            Q     A +++ T+E
Sbjct: 222 GQRLGDVALMDEATRE 237


>UniRef50_Q4HH64 Cluster: Membrane protein, putative; n=1;
           Campylobacter coli RM2228|Rep: Membrane protein,
           putative - Campylobacter coli RM2228
          Length = 89

 Score = 33.5 bits (73), Expect = 5.2
 Identities = 13/37 (35%), Positives = 24/37 (64%)
 Frame = -1

Query: 118 FKFLTVFC*LLDFFYIMLGVIMYVKKKRLLILFIDYF 8
           F ++ +FC ++ F Y++LG I Y++ ++L     DYF
Sbjct: 43  FLYVLLFCEIILFLYMLLG-IFYIRNQKLFYKIFDYF 78


>UniRef50_Q22551 Cluster: Groundhog (Hedgehog-like family) protein
           6; n=2; Caenorhabditis|Rep: Groundhog (Hedgehog-like
           family) protein 6 - Caenorhabditis elegans
          Length = 559

 Score = 33.5 bits (73), Expect = 5.2
 Identities = 16/30 (53%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
 Frame = +1

Query: 490 MERPVKARITPYLSRK-PSRRFPNLEIPSP 576
           +ERPV AR TPY+ R  P+R  P +E P P
Sbjct: 174 IERPVPARPTPYIERPVPARPAPYIERPEP 203



 Score = 32.7 bits (71), Expect = 9.2
 Identities = 23/72 (31%), Positives = 36/72 (50%), Gaps = 6/72 (8%)
 Frame = +1

Query: 490 MERPVKARITPYLSR-KPSRRFPNLE-----IPSPMEKPSRSRKATNG*SKPKSLMERK* 651
           +ERPV AR  PY+ R +P+R  P +E      P+P  +P+ +R A            R  
Sbjct: 186 IERPVPARPAPYIERPEPARPAPYIERPVPARPAPYIEPTPARPAPYIEPSTAKPQPRPQ 245

Query: 652 QQRTRPFTSKNS 687
             RTRP+ + ++
Sbjct: 246 PPRTRPYVAPST 257


>UniRef50_A0YHU3 Cluster: Putative uncharacterized protein; n=1;
           marine gamma proteobacterium HTCC2143|Rep: Putative
           uncharacterized protein - marine gamma proteobacterium
           HTCC2143
          Length = 490

 Score = 32.7 bits (71), Expect = 9.2
 Identities = 14/46 (30%), Positives = 24/46 (52%)
 Frame = +2

Query: 575 RWKSHHALAKRQMDEASQSH*WKENNNNGHGHSLQKTQIGKTRHRR 712
           R+K HH  + RQ+   + S  W+ N ++  G S + + + K  H R
Sbjct: 203 RYKPHHYYSHRQVTHHTDSRRWRHNPHHRRGVSYRNSHVQKRFHPR 248


>UniRef50_Q4E554 Cluster: AAA ATPase, putative; n=2; Trypanosoma
            cruzi|Rep: AAA ATPase, putative - Trypanosoma cruzi
          Length = 1214

 Score = 32.7 bits (71), Expect = 9.2
 Identities = 16/56 (28%), Positives = 27/56 (48%)
 Frame = -3

Query: 329  GSGQAFKRRTFRCCTNTACCRLALLLDTGAAK*APMFDNTREMRESYLFEDCKVIF 162
            G   A +   + C      C +A LL  GA K   +FD  R++    +F++ +V+F
Sbjct: 1017 GKSLAVEGIAYECAATIRLCNVAELLLVGALKVHEVFDEGRKLGAIIVFDEAQVLF 1072


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 658,925,844
Number of Sequences: 1657284
Number of extensions: 12638286
Number of successful extensions: 32869
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 31503
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 32839
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 57024798702
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)