Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte2b08
         (247 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    26   0.60 
SPAC17A2.04c |||HSP chaperone complex subunit |Schizosaccharomyc...    26   0.80 
SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyce...    25   1.4  
SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr...    24   3.2  
SPBP19A11.04c |mor2|cps12|morphogenesis protein Mor2|Schizosacch...    24   3.2  
SPAPB17E12.14c |||6-phosphofructo-2-kinase |Schizosaccharomyces ...    23   4.3  
SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces pombe...    23   5.6  
SPAC31A2.11c |cuf1||Cu metalloregulatory transcription factor Cu...    23   5.6  
SPBC582.05c |brc1||BRCT domain protein Brc1|Schizosaccharomyces ...    23   5.6  
SPCC162.11c |||uridine kinase |Schizosaccharomyces pombe|chr 3||...    23   7.4  
SPBC24C6.09c |||phosphoketolase |Schizosaccharomyces pombe|chr 2...    23   7.4  
SPBC1604.19c |||TRAPP complex subunit Trs85 |Schizosaccharomyces...    22   9.8  

>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 26.2 bits (55), Expect = 0.60
 Identities = 18/54 (33%), Positives = 25/54 (46%), Gaps = 3/54 (5%)
 Frame = +3

Query: 21   YYFRYAYDLNKRKCIKFPYSGYGGNVNRFDSLNECVKACDPAKL---SLENYYK 173
            Y       +N R+ I+  Y  +   +  FDS+N   KAC P  L   S+ NY K
Sbjct: 3268 YNLEKELSINLRRKIEQDY--FSNPIFTFDSVNRASKACGPLLLWIKSICNYSK 3319


>SPAC17A2.04c |||HSP chaperone complex subunit |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 358

 Score = 25.8 bits (54), Expect = 0.80
 Identities = 8/33 (24%), Positives = 20/33 (60%)
 Frame = +3

Query: 114 LNECVKACDPAKLSLENYYKAARSVLKQRKYEE 212
           LN+C +         + YY++A++++  ++Y+E
Sbjct: 122 LNDCAQVLQRDSTHAKAYYRSAKALVALKRYDE 154



 Score = 23.0 bits (47), Expect = 5.6
 Identities = 12/45 (26%), Positives = 22/45 (48%), Gaps = 6/45 (13%)
 Frame = +3

Query: 96  VNRFDSLNECVKAC------DPAKLSLENYYKAARSVLKQRKYEE 212
           + R+D   EC++ C      DPA L+L    +      ++R+ E+
Sbjct: 149 LKRYDEAKECIRLCSLVHPNDPAILALSKELQKKSDDFEKRESEK 193


>SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1666

 Score = 25.0 bits (52), Expect = 1.4
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +3

Query: 3   SYLFNRYYFRYAYDLNKRKCI 65
           +Y+  +Y F + YDL   KCI
Sbjct: 271 AYVVTKYGFIHVYDLETAKCI 291


>SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1471

 Score = 23.8 bits (49), Expect = 3.2
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +3

Query: 141 PAKLSLENYYKAARSVLKQRKYEED*NLKL 230
           PA+ S E +    R +L  +++EED N KL
Sbjct: 683 PARFSYEEFAHRFRILLSSKEWEED-NKKL 711


>SPBP19A11.04c |mor2|cps12|morphogenesis protein
           Mor2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2196

 Score = 23.8 bits (49), Expect = 3.2
 Identities = 11/42 (26%), Positives = 23/42 (54%)
 Frame = +3

Query: 90  GNVNRFDSLNECVKACDPAKLSLENYYKAARSVLKQRKYEED 215
           G++    ++ + +K CD + LS+E++   A    + RK+  D
Sbjct: 707 GDIYSEPTIVDVLKDCDSSILSVESHLPTAAERSRLRKFIND 748


>SPAPB17E12.14c |||6-phosphofructo-2-kinase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 474

 Score = 23.4 bits (48), Expect = 4.3
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = +3

Query: 24  YFRYAYDLNKRKCIKFPYS 80
           +++Y YD N RK  + P+S
Sbjct: 455 FYQYNYDPNTRKFSRVPFS 473


>SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1465

 Score = 23.0 bits (47), Expect = 5.6
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = -1

Query: 130 FTHSFKESNLFTFPP*PEYGNLM 62
           +T+  KES+++  PP    GNL+
Sbjct: 196 YTNYLKESDVWLLPPDERSGNLI 218


>SPAC31A2.11c |cuf1||Cu metalloregulatory transcription factor Cuf1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 411

 Score = 23.0 bits (47), Expect = 5.6
 Identities = 10/33 (30%), Positives = 16/33 (48%)
 Frame = +3

Query: 72  PYSGYGGNVNRFDSLNECVKACDPAKLSLENYY 170
           P + YG  +N  +S N    +  P  + L NY+
Sbjct: 283 PSNSYGYEININESTNHVDSSYLPHPIQLSNYF 315


>SPBC582.05c |brc1||BRCT domain protein Brc1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 878

 Score = 23.0 bits (47), Expect = 5.6
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = +1

Query: 130 KRVILQNYHWKITTKL 177
           K + LQNY W I T L
Sbjct: 845 KTIFLQNYDWLIKTVL 860


>SPCC162.11c |||uridine kinase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 454

 Score = 22.6 bits (46), Expect = 7.4
 Identities = 8/22 (36%), Positives = 15/22 (68%)
 Frame = +3

Query: 150 LSLENYYKAARSVLKQRKYEED 215
           LSL+++YK+  +  K+R +  D
Sbjct: 53  LSLDSFYKSLNAEQKKRAFNND 74


>SPBC24C6.09c |||phosphoketolase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 825

 Score = 22.6 bits (46), Expect = 7.4
 Identities = 8/40 (20%), Positives = 18/40 (45%)
 Frame = -2

Query: 159 PVIILQDHTLLRIHLKNQICLRSLHSPSTEI*CISFCSSH 40
           P  ++  +   R H+       +LH+P+  + C   C+ +
Sbjct: 752 PFNMMMCNNTSRYHVARMALQHALHNPTVAVNCNMLCAKY 791


>SPBC1604.19c |||TRAPP complex subunit Trs85 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 658

 Score = 22.2 bits (45), Expect = 9.8
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = -1

Query: 82  PEYGNLMHFLLFKS*AY 32
           P+YGNL   LLF S  Y
Sbjct: 398 PQYGNLTTRLLFASKKY 414


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 859,296
Number of Sequences: 5004
Number of extensions: 14961
Number of successful extensions: 44
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 44
length of database: 2,362,478
effective HSP length: 60
effective length of database: 2,062,238
effective search space used: 43306998
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)