Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte2b08
         (247 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0571 - 18855317-18855541,18855667-18855747,18855849-188559...    26   3.7  
01_06_1547 - 38150814-38151488,38151608-38151666,38151774-381519...    26   3.7  
08_02_0801 + 21349434-21349438,21349952-21349978,21351175-213512...    26   4.9  
11_03_0071 - 9589669-9590079,9592113-9592334,9592455-9592608,959...    25   6.4  

>10_08_0571 -
           18855317-18855541,18855667-18855747,18855849-18855963,
           18856061-18856224,18856307-18856540,18856626-18856781,
           18857113-18857244,18857850-18857984,18858071-18858457,
           18858708-18858826,18858914-18859124,18859268-18859339,
           18859542-18859628,18859993-18860127,18860240-18860368
          Length = 793

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 15/51 (29%), Positives = 21/51 (41%)
 Frame = +3

Query: 24  YFRYAYDLNKRKCIKFPYSGYGGNVNRFDSLNECVKACDPAKLSLENYYKA 176
           YF  + D      I   Y      +++   L EC++ CD A     NY KA
Sbjct: 92  YFPISPDGTDASLIATLYVNRASTMHKLGLLEECLRDCDRAISVSPNYAKA 142


>01_06_1547 -
           38150814-38151488,38151608-38151666,38151774-38151919,
           38152078-38152274,38152542-38152920,38153000-38153031
          Length = 495

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = +3

Query: 138 DPAKLSLENYYKAARSVLKQRKYEED 215
           DP   SLENY+ +A+S+L  R +  D
Sbjct: 166 DPDDFSLENYF-SAKSLLSSRSFRID 190


>08_02_0801 +
           21349434-21349438,21349952-21349978,21351175-21351249,
           21351333-21351369,21351469-21351552,21351821-21351881,
           21351961-21352067,21352162-21352227,21352366-21352461
          Length = 185

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +3

Query: 12  FNRYYFRYAYDLNKRKCIKFP 74
           F  Y FRY    +K+KCI+ P
Sbjct: 86  FYPYAFRYCLTEDKKKCIEIP 106


>11_03_0071 -
           9589669-9590079,9592113-9592334,9592455-9592608,
           9592981-9593212,9593303-9593558,9593850-9593870
          Length = 431

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 16/66 (24%), Positives = 32/66 (48%), Gaps = 1/66 (1%)
 Frame = +3

Query: 15  NRYYFRYAYDLNKRKCIKFPYSGYGGNVNRFDSLNECVKACDPAKLSLEN-YYKAARSVL 191
           +RY  R A  L  R+CI+        N ++  ++N+ +   +     +EN + +  +S+L
Sbjct: 234 SRYASREADMLAVRQCIELSLRCVEANRDKRPAINDIIHQLNELDAEIENMFMRQPKSLL 293

Query: 192 KQRKYE 209
            Q+  E
Sbjct: 294 GQKSSE 299


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,908,666
Number of Sequences: 37544
Number of extensions: 80434
Number of successful extensions: 147
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 147
length of database: 14,793,348
effective HSP length: 60
effective length of database: 12,540,708
effective search space used: 263354868
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)