Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte2b07
         (811 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF025669-1|AAB81523.1|  243|Tribolium castaneum GABA receptor su...    27   0.18 
AY884064-1|AAX84205.1|  683|Tribolium castaneum pro-phenol oxida...    24   1.2  
AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax pr...    24   1.2  
DQ414247-1|ABD63009.2|  414|Tribolium castaneum paired protein.        22   5.0  
AY055846-1|AAL26542.2|  312|Tribolium castaneum cephalothorax pr...    22   5.0  
AY055845-1|AAL23670.2|  230|Tribolium castaneum cephalothorax pr...    22   5.0  
AF426396-1|AAL27023.2|  312|Tribolium castaneum cephalothorax pr...    22   5.0  
AF426395-1|AAL27022.2|  297|Tribolium castaneum cephalothorax pr...    22   5.0  
AF416773-1|AAL09697.1|  268|Tribolium castaneum cephalothorax pr...    22   5.0  
AF321227-2|AAK16422.1|  312|Tribolium castaneum Scr protein.           22   5.0  
AF227628-1|AAF42868.1|  312|Tribolium castaneum sex combs reduce...    22   5.0  
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    22   6.6  
DQ659253-1|ABG47451.1|  439|Tribolium castaneum imaginal disc gr...    21   8.8  

>AF025669-1|AAB81523.1|  243|Tribolium castaneum GABA receptor
           subunit protein.
          Length = 243

 Score = 27.1 bits (57), Expect = 0.18
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = -2

Query: 579 SVSWSRNRPPILSGEPIIVGVTVFLCGNREFANVEQD 469
           SVS+ +   P   G P+ VGVT+++      + V+ D
Sbjct: 49  SVSYDKRVRPNYGGPPVEVGVTMYVLSISSLSEVKMD 85


>AY884064-1|AAX84205.1|  683|Tribolium castaneum pro-phenol oxidase
           subunit 2 protein.
          Length = 683

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -1

Query: 220 MKDQLIA*YTFPVSCFKIKQLTR 152
           M  Q+IA Y F   C K+K+ TR
Sbjct: 235 MHQQIIARYNFERLCNKLKRATR 257


>AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 18/66 (27%), Positives = 28/66 (42%)
 Frame = +2

Query: 317 SGYRRPWTSAMPRAEPGRCLPLNTTEHDS*FLSSSLESRPA*IVTPPSLRASCSTLANSR 496
           +G   P   +   A P    PL+T  + +   SS L S  +   +PP   A+ +T  N  
Sbjct: 108 TGVASPQDLSTNGAPPRSTPPLSTPSNSNATKSSGLTSPLSVSTSPPGKPATSTTSQNLS 167

Query: 497 FPHKNT 514
            P  +T
Sbjct: 168 SPASST 173


>DQ414247-1|ABD63009.2|  414|Tribolium castaneum paired protein.
          Length = 414

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = +1

Query: 493 AVSTQEHGYPNN 528
           AV+TQ  GYP N
Sbjct: 384 AVTTQHQGYPTN 395


>AY055846-1|AAL26542.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 17/66 (25%), Positives = 27/66 (40%)
 Frame = +2

Query: 317 SGYRRPWTSAMPRAEPGRCLPLNTTEHDS*FLSSSLESRPA*IVTPPSLRASCSTLANSR 496
           +G   P   +   A P    PL+T  + +   SS L S  +   +PP   A+ +   N  
Sbjct: 108 TGVASPQDLSTNGAPPRSTPPLSTPSNSNATKSSGLTSPLSVSTSPPGKPATSTASQNLS 167

Query: 497 FPHKNT 514
            P  +T
Sbjct: 168 SPASST 173


>AY055845-1|AAL23670.2|  230|Tribolium castaneum cephalothorax
           protein.
          Length = 230

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 17/66 (25%), Positives = 27/66 (40%)
 Frame = +2

Query: 317 SGYRRPWTSAMPRAEPGRCLPLNTTEHDS*FLSSSLESRPA*IVTPPSLRASCSTLANSR 496
           +G   P   +   A P    PL+T  + +   SS L S  +   +PP   A+ +   N  
Sbjct: 108 TGVASPQDLSTNGAPPRSTPPLSTPSNSNATKSSGLTSPLSVSTSPPGKPATSTASQNLS 167

Query: 497 FPHKNT 514
            P  +T
Sbjct: 168 SPASST 173


>AF426396-1|AAL27023.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 17/66 (25%), Positives = 27/66 (40%)
 Frame = +2

Query: 317 SGYRRPWTSAMPRAEPGRCLPLNTTEHDS*FLSSSLESRPA*IVTPPSLRASCSTLANSR 496
           +G   P   +   A P    PL+T  + +   SS L S  +   +PP   A+ +   N  
Sbjct: 108 TGVASPQDLSTNGAPPRSTPPLSTPSNSNATKSSGLTSPLSVSTSPPGKPATSTASQNLS 167

Query: 497 FPHKNT 514
            P  +T
Sbjct: 168 SPASST 173


>AF426395-1|AAL27022.2|  297|Tribolium castaneum cephalothorax
           protein.
          Length = 297

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 17/66 (25%), Positives = 27/66 (40%)
 Frame = +2

Query: 317 SGYRRPWTSAMPRAEPGRCLPLNTTEHDS*FLSSSLESRPA*IVTPPSLRASCSTLANSR 496
           +G   P   +   A P    PL+T  + +   SS L S  +   +PP   A+ +   N  
Sbjct: 108 TGVASPQDLSTNGAPPRSTPPLSTPSNSNATKSSGLTSPLSVSTSPPGKPATSTASQNLS 167

Query: 497 FPHKNT 514
            P  +T
Sbjct: 168 SPASST 173


>AF416773-1|AAL09697.1|  268|Tribolium castaneum cephalothorax
           protein.
          Length = 268

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 17/66 (25%), Positives = 27/66 (40%)
 Frame = +2

Query: 317 SGYRRPWTSAMPRAEPGRCLPLNTTEHDS*FLSSSLESRPA*IVTPPSLRASCSTLANSR 496
           +G   P   +   A P    PL+T  + +   SS L S  +   +PP   A+ +   N  
Sbjct: 64  TGVASPQDLSTNGAPPRSTPPLSTPSNSNATKSSGLTSPLSVSTSPPGKPATSTASQNLS 123

Query: 497 FPHKNT 514
            P  +T
Sbjct: 124 SPASST 129


>AF321227-2|AAK16422.1|  312|Tribolium castaneum Scr protein.
          Length = 312

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 17/66 (25%), Positives = 27/66 (40%)
 Frame = +2

Query: 317 SGYRRPWTSAMPRAEPGRCLPLNTTEHDS*FLSSSLESRPA*IVTPPSLRASCSTLANSR 496
           +G   P   +   A P    PL+T  + +   SS L S  +   +PP   A+ +   N  
Sbjct: 108 TGVASPQDLSTNGAPPRSTPPLSTPSNSNATKSSGLTSPLSVSTSPPGKPATSTASQNLS 167

Query: 497 FPHKNT 514
            P  +T
Sbjct: 168 SPASST 173


>AF227628-1|AAF42868.1|  312|Tribolium castaneum sex combs reduced
           Scr protein.
          Length = 312

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 17/66 (25%), Positives = 27/66 (40%)
 Frame = +2

Query: 317 SGYRRPWTSAMPRAEPGRCLPLNTTEHDS*FLSSSLESRPA*IVTPPSLRASCSTLANSR 496
           +G   P   +   A P    PL+T  + +   SS L S  +   +PP   A+ +   N  
Sbjct: 108 TGVASPQDLSTNGAPPRSTPPLSTPSNSNATKSSGLTSPLSVSTSPPGKPATSTASQNLS 167

Query: 497 FPHKNT 514
            P  +T
Sbjct: 168 SPASST 173


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = -3

Query: 332 GDGNHSPSGGP 300
           G GN+ P GGP
Sbjct: 530 GSGNNQPPGGP 540


>DQ659253-1|ABG47451.1|  439|Tribolium castaneum imaginal disc
           growth factor 2 protein.
          Length = 439

 Score = 21.4 bits (43), Expect = 8.8
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = +3

Query: 732 PMALSPSLYFLVYE 773
           P ALSP+L F+V E
Sbjct: 231 PRALSPNLEFVVLE 244


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 191,315
Number of Sequences: 336
Number of extensions: 4705
Number of successful extensions: 18
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 22102797
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)