Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte2b07
         (811 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC613.09 |sen54||tRNA-splicing endonuclease subunit Sen54 |Sch...    27   3.2  
SPBP23A10.06 |||manganese ion transporter |Schizosaccharomyces p...    27   4.2  
SPBC31F10.06c |sar1||ADP-ribosylation factor Sar1|Schizosaccharo...    26   5.5  
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom...    26   5.5  
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom...    26   5.5  

>SPCC613.09 |sen54||tRNA-splicing endonuclease subunit Sen54
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 384

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = -3

Query: 116 QRLIKHLKIVYANLIF*ISEY*LVSYVPTSD 24
           Q + + LK  Y N+I  I +Y ++SY+  SD
Sbjct: 325 QHMFQRLKEGYRNIIIAIVDYGVISYIRLSD 355


>SPBP23A10.06 |||manganese ion transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 335

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 6/45 (13%)
 Frame = -3

Query: 356 PLALLKSMGDGNHSPS--GGP----YPCLPTRAIKKYWKGLCPSV 240
           P++  K +G G  +P   GGP    Y       ++  W+GL PS+
Sbjct: 65  PISSAKILGKGRPAPKPLGGPVSGLYQIARHEGVRSLWRGLVPSL 109


>SPBC31F10.06c |sar1||ADP-ribosylation factor
           Sar1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 190

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +1

Query: 229 LSSATDGHRPFQYFFIALVGRQGYG 303
           +S    G RP + F  ++V RQGYG
Sbjct: 156 VSKPVPGIRPIEVFMCSVVLRQGYG 180


>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
           pombe|chr 1||Partial|Manual
          Length = 1887

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 14/42 (33%), Positives = 26/42 (61%), Gaps = 2/42 (4%)
 Frame = -3

Query: 425 QGWMIKIKNRV-QLCLTVGSGLALPLALLKSMGDG-NHSPSG 306
           +G   K+++ + +LC  +     LP++LL+S+GD  N+S  G
Sbjct: 728 EGMFAKVQDLLKELCFDMNVEKLLPISLLRSIGDDINNSKLG 769


>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase
           Tlh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1919

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 14/42 (33%), Positives = 26/42 (61%), Gaps = 2/42 (4%)
 Frame = -3

Query: 425 QGWMIKIKNRV-QLCLTVGSGLALPLALLKSMGDG-NHSPSG 306
           +G   K+++ + +LC  +     LP++LL+S+GD  N+S  G
Sbjct: 728 EGMFAKVQDLLKELCFDMNVEKLLPISLLRSIGDDINNSKLG 769


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,306,176
Number of Sequences: 5004
Number of extensions: 72600
Number of successful extensions: 150
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 150
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 394431430
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)