Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte2b07
         (811 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0259 - 18851809-18852561,18852659-18852895                       30   1.9  
05_01_0450 + 3577928-3579526,3579695-3579832                           30   1.9  
08_01_0180 - 1524302-1524877,1525998-1527056                           29   4.4  
09_01_0040 + 744733-745269                                             29   5.8  
06_03_1006 + 26844161-26844198,26844304-26844372,26844526-268445...    29   5.8  
06_03_0933 + 26067109-26067232,26067334-26067486,26068929-260692...    28   7.6  

>06_03_0259 - 18851809-18852561,18852659-18852895
          Length = 329

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 16/44 (36%), Positives = 25/44 (56%)
 Frame = -3

Query: 371 SGLALPLALLKSMGDGNHSPSGGPYPCLPTRAIKKYWKGLCPSV 240
           + L+L LA+L S G+G+H P   P   +      KY++  CP+V
Sbjct: 10  ASLSLLLAVLASTGEGSHQPVVMP---VAMELSAKYYRKTCPNV 50


>05_01_0450 + 3577928-3579526,3579695-3579832
          Length = 578

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 17/53 (32%), Positives = 23/53 (43%), Gaps = 1/53 (1%)
 Frame = -3

Query: 332 GDGNHSPSGGPYPCLPTR-AIKKYWKGLCPSVADDNDSDEGSTYRVIHISCFM 177
           G G     GG   CL T   IK  WK +     D     +G+ YR +H++  M
Sbjct: 334 GGGGGDGDGGDRACLRTHEVIKAMWKDVPARTKDYITRPKGNGYRSLHVAVDM 386


>08_01_0180 - 1524302-1524877,1525998-1527056
          Length = 544

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
 Frame = +2

Query: 272 LLPL*ADKDT--AHLMVSGYRRPWTSAMPRAEPGRCLPLNTTEHDS*FLSSSLES 430
           LL L AD  T  A+  V      W +A+P A P   + L+   HD+ FLS  + +
Sbjct: 14  LLALIADGLTIKAYTRVRAVCTAWRAAIPAASPSLLVRLDWNRHDAWFLSPRIST 68


>09_01_0040 + 744733-745269
          Length = 178

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 17/47 (36%), Positives = 23/47 (48%)
 Frame = +1

Query: 247 GHRPFQYFFIALVGRQGYGPPDGEWLPSPMDFSNAKGRARPLPTVKH 387
           GHR F  F + L+   G+ PP+  W P        +GRARP    +H
Sbjct: 41  GHRLFAPFVLGLIVLCGHAPPN-NWCP-----WGREGRARPSSGPRH 81


>06_03_1006 +
           26844161-26844198,26844304-26844372,26844526-26844591,
           26844831-26844902,26844982-26845053,26846179-26846244,
           26846409-26846881,26846966-26847324,26847429-26847697,
           26847780-26847918,26848323-26848462,26848612-26848768,
           26848925-26848978,26849457-26849539,26851085-26851136
          Length = 702

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 20/58 (34%), Positives = 29/58 (50%)
 Frame = +2

Query: 326 RRPWTSAMPRAEPGRCLPLNTTEHDS*FLSSSLESRPA*IVTPPSLRASCSTLANSRF 499
           R+P+ S++PRAE       N+  HD   LS  ++         PS++  CS  A SRF
Sbjct: 583 RKPYDSSLPRAEQHLVRWANSQLHDIESLSRMVD---------PSIQGQCSEKALSRF 631


>06_03_0933 +
           26067109-26067232,26067334-26067486,26068929-26069279,
           26069375-26069451,26069665-26070982,26071948-26072009,
           26072253-26072309
          Length = 713

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 13/52 (25%), Positives = 22/52 (42%)
 Frame = -3

Query: 356 PLALLKSMGDGNHSPSGGPYPCLPTRAIKKYWKGLCPSVADDNDSDEGSTYR 201
           PL  +      + S  G  Y         KYW+   PS+  D   ++G+++R
Sbjct: 488 PLVQMNQSSTNHFSTIGNDYQFPDLANCSKYWQPTAPSMFPDLGHNDGTSFR 539


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,114,354
Number of Sequences: 37544
Number of extensions: 491118
Number of successful extensions: 1113
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1075
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1111
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2209429392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)