Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte2b07
         (811 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_12391| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.84 
SB_57295| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.9  

>SB_12391| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 695

 Score = 31.5 bits (68), Expect = 0.84
 Identities = 28/97 (28%), Positives = 40/97 (41%)
 Frame = -2

Query: 546 LSGEPIIVGVTVFLCGNREFANVEQDALKLGGVTIYAGRLSRLDDKNQESCSVVFNGRQR 367
           L GEP IV V + L    + +++  DAL   G  +    +SR     Q   SV F  R R
Sbjct: 508 LIGEPAIVKVLIPLANRLQVSSLRLDALDRFGNVLEMSMVSRATATFQRPPSVPFKLRLR 567

Query: 366 PGSALGIAEVHGRR*PLTIRWAVSLSAYKGNKKILER 256
             +  G +     R  +T + A+    Y  N   L R
Sbjct: 568 GTTVGGFSFERISRKIITAKSAIIRMVYNKNYYTLPR 604


>SB_57295| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1320

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 15/32 (46%), Positives = 21/32 (65%), Gaps = 3/32 (9%)
 Frame = -3

Query: 437  QGGSQGWMIKIKNRVQ---LCLTVGSGLALPL 351
            Q G+Q W +  K+ V+   LCLT+GSG A+ L
Sbjct: 1224 QAGNQEWALTKKSTVRHLDLCLTLGSGGAVTL 1255


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,504,930
Number of Sequences: 59808
Number of extensions: 570187
Number of successful extensions: 1165
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1046
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1158
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2251677692
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)