Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte2b07
         (811 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY578799-1|AAT07304.1|  679|Anopheles gambiae brinker protein.         25   0.42 
AY705405-1|AAU12514.1|  519|Anopheles gambiae nicotinic acetylch...    23   8.4  

>AY578799-1|AAT07304.1|  679|Anopheles gambiae brinker protein.
          Length = 679

 Score = 24.6 bits (51), Expect(2) = 0.42
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = +2

Query: 182 NRKCVLRDKLILHHYHYHQ 238
           NR+  ++  L+ HH H+HQ
Sbjct: 106 NREAGMKINLLNHHQHHHQ 124



 Score = 21.4 bits (43), Expect(2) = 0.42
 Identities = 7/22 (31%), Positives = 12/22 (54%)
 Frame = +2

Query: 215 LHHYHYHQPLMDIGLSNIFLLP 280
           +HH+H+H      GL+ +   P
Sbjct: 156 MHHHHHHPHHHHPGLTGLMQAP 177


>AY705405-1|AAU12514.1|  519|Anopheles gambiae nicotinic
           acetylcholine receptor subunitbeta 1 protein.
          Length = 519

 Score = 23.4 bits (48), Expect = 8.4
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +1

Query: 304 PPDGEWLPSPMDFSNAKG 357
           PPD  W P  + F+NA G
Sbjct: 104 PPDKVWKPDIVLFNNADG 121


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 829,209
Number of Sequences: 2352
Number of extensions: 18363
Number of successful extensions: 60
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 59
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 60
length of database: 563,979
effective HSP length: 63
effective length of database: 415,803
effective search space used: 85655418
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)