Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte2b07
         (811 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC103567-9|AAL35735.1|  204|Caenorhabditis elegans Hypothetical ...    41   0.001
U58735-1|AAC48148.1|  891|Caenorhabditis elegans Hypothetical pr...    39   0.005
AF054983-1|AAC72298.1| 1066|Caenorhabditis elegans reverse trans...    39   0.005
AF025462-7|AAB71003.1|  805|Caenorhabditis elegans Hypothetical ...    39   0.005
AC087794-3|AAG53700.1|  417|Caenorhabditis elegans Hypothetical ...    39   0.005
Z83217-3|CAB05682.3|  610|Caenorhabditis elegans Hypothetical pr...    30   1.7  
U88178-6|ABA03112.1|  312|Caenorhabditis elegans Hypothetical pr...    28   6.9  

>AC103567-9|AAL35735.1|  204|Caenorhabditis elegans Hypothetical
           protein Y51F10.8 protein.
          Length = 204

 Score = 41.1 bits (92), Expect = 0.001
 Identities = 20/49 (40%), Positives = 26/49 (53%)
 Frame = -1

Query: 586 VKISKLESQ*ATHIIRRTDNCWGNRVLVWKPRICQR*TGRPQARWSDDL 440
           + I K +   A H+ RRTD  W   +  W PR  +R  GRP  RW+D L
Sbjct: 116 IHIKKRKLGWAGHVARRTDGRWTTLMNDWCPRDEKRPVGRPPMRWNDSL 164


>U58735-1|AAC48148.1|  891|Caenorhabditis elegans Hypothetical
           protein F20B4.7 protein.
          Length = 891

 Score = 38.7 bits (86), Expect = 0.005
 Identities = 16/39 (41%), Positives = 21/39 (53%)
 Frame = -1

Query: 556 ATHIIRRTDNCWGNRVLVWKPRICQR*TGRPQARWSDDL 440
           A H+ RR D  W   +  W+P   +R  GRP  RW+D L
Sbjct: 815 AGHVARRKDGRWTTLMTEWRPYGWKRPVGRPPMRWTDSL 853


>AF054983-1|AAC72298.1| 1066|Caenorhabditis elegans reverse
            transcriptase protein.
          Length = 1066

 Score = 38.7 bits (86), Expect = 0.005
 Identities = 16/39 (41%), Positives = 21/39 (53%)
 Frame = -1

Query: 556  ATHIIRRTDNCWGNRVLVWKPRICQR*TGRPQARWSDDL 440
            A H+ RR D  W   +  W+P   +R  GRP  RW+D L
Sbjct: 990  AGHVARRKDGRWTTLMTEWRPYGWKRPVGRPPMRWTDSL 1028


>AF025462-7|AAB71003.1|  805|Caenorhabditis elegans Hypothetical
           protein K10F12.5 protein.
          Length = 805

 Score = 38.7 bits (86), Expect = 0.005
 Identities = 16/39 (41%), Positives = 21/39 (53%)
 Frame = -1

Query: 556 ATHIIRRTDNCWGNRVLVWKPRICQR*TGRPQARWSDDL 440
           A H+ RR D  W   +  W+P   +R  GRP  RW+D L
Sbjct: 729 AGHVARRKDGRWTTLMTEWRPYGWKRPVGRPPMRWTDSL 767


>AC087794-3|AAG53700.1|  417|Caenorhabditis elegans Hypothetical
           protein Y32G9A.9 protein.
          Length = 417

 Score = 38.7 bits (86), Expect = 0.005
 Identities = 16/39 (41%), Positives = 21/39 (53%)
 Frame = -1

Query: 556 ATHIIRRTDNCWGNRVLVWKPRICQR*TGRPQARWSDDL 440
           A H+ RR D  W   +  W+P   +R  GRP  RW+D L
Sbjct: 341 AGHVARRKDGRWTTLMTEWRPYGWKRPVGRPPMRWTDSL 379


>Z83217-3|CAB05682.3|  610|Caenorhabditis elegans Hypothetical
           protein C10C6.5 protein.
          Length = 610

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
 Frame = -2

Query: 402 ESCSVVFNGRQRPGSALGIAEVHGRR*PLTIRW-AVSLSAYKGNKKILERPMSIS 241
           E+CS++  G+   G+A  +        P+T+ W  +S+ A K  K+ILE    I+
Sbjct: 4   ETCSLLSVGQSEYGAAASMISALEAVDPVTLTWHNISIHAEKSGKQILENVSGIA 58


>U88178-6|ABA03112.1|  312|Caenorhabditis elegans Hypothetical
           protein W09C3.8 protein.
          Length = 312

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 3/46 (6%)
 Frame = -1

Query: 568 ESQ*ATHIIRRTDNCWGNRVLVWKP---RICQR*TGRPQARWSDDL 440
           +S+ A HI+RR  N W      W P   +  +R  G  + RW+ D+
Sbjct: 213 QSRFAGHILRRDPNRWTKICTEWDPSHNKNWKRAVGGQKKRWAKDI 258


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,143,960
Number of Sequences: 27780
Number of extensions: 413467
Number of successful extensions: 848
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 795
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 848
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1987863822
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)