Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte2b07
         (811 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    27   0.21 
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    25   0.83 
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    23   2.5  
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    23   3.3  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    23   3.3  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    22   5.8  
AF205594-1|AAQ13840.1|  156|Apis mellifera acid phosphatase prec...    22   7.7  

>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 27.1 bits (57), Expect = 0.21
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = -2

Query: 579 SVSWSRNRPPILSGEPIIVGVTVFLCGNREFANVEQD 469
           SVS+ +   P   G P+ VGVT+++      + V+ D
Sbjct: 20  SVSYDKRVRPNYGGPPVEVGVTMYVLSISSLSEVKMD 56


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 25.0 bits (52), Expect = 0.83
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = -2

Query: 579 SVSWSRNRPPILSGEPIIVGVTVFLCGNREFANVEQD 469
           SVS+ +   P   G P+ VGVT+++      + V  D
Sbjct: 20  SVSYDKRVRPNYGGPPVEVGVTMYVLSISSVSEVLMD 56


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 23.4 bits (48), Expect = 2.5
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +1

Query: 304 PPDGEWLPSPMDFSNAKG 357
           PPD  W P  + F+NA G
Sbjct: 104 PPDKVWKPDIVLFNNADG 121


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 23.0 bits (47), Expect = 3.3
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -2

Query: 528 IVGVTVFLCGNREFANVEQD 469
           IV  TV LCG+   AN+ ++
Sbjct: 441 IVSTTVILCGSPPSANIAKE 460


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 23.0 bits (47), Expect = 3.3
 Identities = 10/31 (32%), Positives = 15/31 (48%)
 Frame = +1

Query: 241 TDGHRPFQYFFIALVGRQGYGPPDGEWLPSP 333
           TDG   ++ +   L+   GY  PDG  +  P
Sbjct: 177 TDGKHDYRVWNHQLISYAGYKNPDGTIIGDP 207


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 22.2 bits (45), Expect = 5.8
 Identities = 12/40 (30%), Positives = 20/40 (50%)
 Frame = +2

Query: 299 TAHLMVSGYRRPWTSAMPRAEPGRCLPLNTTEHDS*FLSS 418
           + H M    R+ + + MPR    R  P +T E+D  ++ S
Sbjct: 342 STHNMSPWVRQVFLNWMPRLLMMRRTPYSTPEYDDTYMDS 381


>AF205594-1|AAQ13840.1|  156|Apis mellifera acid phosphatase
           precursor protein.
          Length = 156

 Score = 21.8 bits (44), Expect = 7.7
 Identities = 8/26 (30%), Positives = 15/26 (57%)
 Frame = +3

Query: 558 YCDSSLLIFTKVNYKIFK*RNINIMY 635
           Y  +S +IF  + +K F   N N+++
Sbjct: 128 YGGNSTIIFLLIRFKSFSLLNFNLLF 153


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 224,937
Number of Sequences: 438
Number of extensions: 5063
Number of successful extensions: 15
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25731924
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)