Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte2b05
         (732 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3G6.11 |||ATP-dependent DNA helicase Chl1|Schizosaccharomyce...    30   0.39 
SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces ...    27   3.6  
SPCC736.03c |||phenylalanyl-tRNA synthetase|Schizosaccharomyces ...    27   3.6  
SPBC1A4.10c |pmc1|SPBP23A10.01c, med14|mediator complex subunit ...    27   3.6  
SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual    25   8.4  
SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch...    25   8.4  
SPBC3B9.15c |scp1||sterol regulatory element binding protein Scp...    25   8.4  

>SPAC3G6.11 |||ATP-dependent DNA helicase Chl1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 844

 Score = 29.9 bits (64), Expect = 0.39
 Identities = 16/39 (41%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
 Frame = +3

Query: 486 GRSQSPVDIPVKGLIKARRGRPLLF-CNYDVPPENMTLI 599
           G + SP+D  +  L    + R L F C++ VPPEN+T I
Sbjct: 566 GGTMSPIDDFITLLFSDEQSRILPFSCDHIVPPENITTI 604


>SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1427

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 11/31 (35%), Positives = 20/31 (64%)
 Frame = -2

Query: 134 APDSVAHLSISIRSSYNTRQKHIKKQNFQTH 42
           +PDS+  L  S   S NT++ +I+++N + H
Sbjct: 789 SPDSIQELVPSTFFSSNTKKDNIEEENLEPH 819


>SPCC736.03c |||phenylalanyl-tRNA synthetase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 429

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = +1

Query: 253 NWKLRLKTDLYTEVPKQYGCFIYRRNFPKD 342
           NWK +++TD ++ VP+     I R  F K+
Sbjct: 19  NWKRKVQTDSWSNVPEHIHSKIGRNLFQKE 48


>SPBC1A4.10c |pmc1|SPBP23A10.01c, med14|mediator complex subunit
           Pmc1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 879

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 20/59 (33%), Positives = 25/59 (42%), Gaps = 4/59 (6%)
 Frame = -2

Query: 647 CFRIPESREGHSPLVFN*CH----IFWWHIIVAKEQRPASTRLY*SFNWYVDWRLGSTT 483
           C  +P S E   P+VF   H    IF   I   K + P  +      N Y+DWR G  T
Sbjct: 608 CIMMPSSNEDMLPVVFVRAHDGQLIFDSRI---KGKLPYQSETETEKNCYIDWRTGRIT 663


>SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1828

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = -2

Query: 659  NNGRCFRIPESREGHSPLVF 600
            N+G    I + R+GHSPL+F
Sbjct: 1383 NSGEDLFISKIRKGHSPLIF 1402


>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
            homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2609

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 14/40 (35%), Positives = 19/40 (47%)
 Frame = +3

Query: 174  SSTEFTHDQTTSRANTLFDDADDIQKQLEIEAKNRFVYGS 293
            S  E  HD   S +N   +D +D   + + E KNR V  S
Sbjct: 1694 SQEETLHDAARSDSNNSMEDEEDDVDEEDKEDKNRTVMRS 1733


>SPBC3B9.15c |scp1||sterol regulatory element binding protein
           Scp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1086

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 11/36 (30%), Positives = 18/36 (50%)
 Frame = +3

Query: 120 DGIGSLCWLMYVAYISTSSSTEFTHDQTTSRANTLF 227
           D +G++ + MYV Y+   SST+       +  N  F
Sbjct: 431 DNLGTVSFHMYVIYLQLQSSTDINGSWRLASPNIRF 466


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,065,972
Number of Sequences: 5004
Number of extensions: 62730
Number of successful extensions: 199
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 190
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 199
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 345237368
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)