Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte2b05
         (732 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z32680-2|CAA83597.1| 1218|Caenorhabditis elegans Hypothetical pr...    30   1.9  
Z32680-1|CAA83599.1| 1223|Caenorhabditis elegans Hypothetical pr...    30   1.9  
Z81550-5|CAB04479.1|  881|Caenorhabditis elegans Hypothetical pr...    28   7.8  
U41105-3|AAX88810.1|  514|Caenorhabditis elegans Lysyl (k) trna ...    28   7.8  
U41105-2|AAK68395.1|  596|Caenorhabditis elegans Lysyl (k) trna ...    28   7.8  
U41105-1|AAA82396.1|  572|Caenorhabditis elegans Lysyl (k) trna ...    28   7.8  

>Z32680-2|CAA83597.1| 1218|Caenorhabditis elegans Hypothetical
           protein C28A5.2 protein.
          Length = 1218

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 15/30 (50%), Positives = 19/30 (63%)
 Frame = +3

Query: 162 ISTSSSTEFTHDQTTSRANTLFDDADDIQK 251
           I T S  E THDQ +SRA+T+   A D+ K
Sbjct: 669 IITESFYESTHDQASSRASTVDRLASDVDK 698


>Z32680-1|CAA83599.1| 1223|Caenorhabditis elegans Hypothetical
           protein C28A5.1 protein.
          Length = 1223

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 15/30 (50%), Positives = 19/30 (63%)
 Frame = +3

Query: 162 ISTSSSTEFTHDQTTSRANTLFDDADDIQK 251
           I T S  E THDQ +SRA+T+   A D+ K
Sbjct: 669 IITESFYESTHDQASSRASTVDRLASDVDK 698


>Z81550-5|CAB04479.1|  881|Caenorhabditis elegans Hypothetical
           protein F55F3.4 protein.
          Length = 881

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 16/65 (24%), Positives = 31/65 (47%)
 Frame = -1

Query: 471 TSSTNCFVLHIPNRT*HPR*TSLAEL*RQVSINN*SLVVESQRVLREISAVNETPILLWD 292
           T  TN  + H+ N+  H     L  L R +SI   ++   + ++   + +    PILLW+
Sbjct: 685 TMKTNGGLYHVENQQIHFVAIPLGNLDRPISIRLTNMGTTTVQLYASLCSPQAAPILLWN 744

Query: 291 FRIQI 277
            ++ +
Sbjct: 745 KKLTV 749


>U41105-3|AAX88810.1|  514|Caenorhabditis elegans Lysyl (k) trna
           synthetase protein1, isoform c protein.
          Length = 514

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 19/48 (39%), Positives = 25/48 (52%), Gaps = 3/48 (6%)
 Frame = +3

Query: 291 SPKAIWVFHLP---PKFPEGHAVTRQLSSNYLSKPDAITQRAMFNADA 425
           SP A W   +P    +F E  AVTR++++ Y    D ITQR  F   A
Sbjct: 392 SPLAKWHRSIPGLTERF-ELFAVTREIANAYTELNDPITQRQRFEQQA 438


>U41105-2|AAK68395.1|  596|Caenorhabditis elegans Lysyl (k) trna
           synthetase protein1, isoform b protein.
          Length = 596

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 19/48 (39%), Positives = 25/48 (52%), Gaps = 3/48 (6%)
 Frame = +3

Query: 291 SPKAIWVFHLP---PKFPEGHAVTRQLSSNYLSKPDAITQRAMFNADA 425
           SP A W   +P    +F E  AVTR++++ Y    D ITQR  F   A
Sbjct: 474 SPLAKWHRSIPGLTERF-ELFAVTREIANAYTELNDPITQRQRFEQQA 520


>U41105-1|AAA82396.1|  572|Caenorhabditis elegans Lysyl (k) trna
           synthetase protein1, isoform a protein.
          Length = 572

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 19/48 (39%), Positives = 25/48 (52%), Gaps = 3/48 (6%)
 Frame = +3

Query: 291 SPKAIWVFHLP---PKFPEGHAVTRQLSSNYLSKPDAITQRAMFNADA 425
           SP A W   +P    +F E  AVTR++++ Y    D ITQR  F   A
Sbjct: 450 SPLAKWHRSIPGLTERF-ELFAVTREIANAYTELNDPITQRQRFEQQA 496


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,977,971
Number of Sequences: 27780
Number of extensions: 354811
Number of successful extensions: 950
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 868
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 950
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1714401074
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)