Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte2b03
         (489 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_7305| Best HMM Match : Extensin_2 (HMM E-Value=0.043)               28   3.6  
SB_11891| Best HMM Match : F5_F8_type_C (HMM E-Value=4.7e-35)          27   6.3  

>SB_7305| Best HMM Match : Extensin_2 (HMM E-Value=0.043)
          Length = 908

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = +3

Query: 351 PDSLDDLNDAPELNAADQSS 410
           PDSL+DLN AP+ +   +SS
Sbjct: 249 PDSLEDLNSAPKFSLRSESS 268


>SB_11891| Best HMM Match : F5_F8_type_C (HMM E-Value=4.7e-35)
          Length = 1171

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 10/15 (66%), Positives = 12/15 (80%)
 Frame = -3

Query: 196  PRGARFIYCWPIEFS 152
            PR AR++  WPIEFS
Sbjct: 980  PRTARYVRFWPIEFS 994


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,075,158
Number of Sequences: 59808
Number of extensions: 136941
Number of successful extensions: 313
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 282
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 311
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1038380485
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)