Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte2b02
(741 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4F8.07c |hxk2||hexokinase 2 |Schizosaccharomyces pombe|chr 1... 28 1.2
SPBC23E6.05 |arx1||ribosomal export complex Arx1 |Schizosaccharo... 28 1.6
SPAC2C4.11c |rbp28||RNA-binding protein Rbp28|Schizosaccharomyce... 28 1.6
SPCC11E10.04 |||mitochondrial ATPase expression protein homolog|... 27 2.1
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi... 27 2.8
SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|ch... 27 3.7
SPCC417.06c |ppk35|mug27|serine/threonine protein kinase Ppk35|S... 27 3.7
SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces ... 26 6.5
SPCC1322.09 |||conserved fungal protein|Schizosaccharomyces pomb... 26 6.5
SPCC1739.13 |ssa2||heat shock protein Ssa2|Schizosaccharomyces p... 26 6.5
SPBC354.15 |fap1||L-pipecolate oxidase|Schizosaccharomyces pombe... 26 6.5
SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces pomb... 25 8.6
SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-gluca... 25 8.6
SPAC19B12.07c |||human ZNF277P homolog|Schizosaccharomyces pombe... 25 8.6
>SPAC4F8.07c |hxk2||hexokinase 2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 455
Score = 28.3 bits (60), Expect = 1.2
Identities = 14/43 (32%), Positives = 25/43 (58%)
Frame = +2
Query: 467 SITDEWALLPRTLTRSVLRQSCSSILNLKNLKWNGFRSRQKRL 595
SITD W+L L+R ++ +S ++ N+ + FRS ++ L
Sbjct: 316 SITDAWSLETSVLSRMMVERSAENVRNVLSTFKFRFRSDEEAL 358
>SPBC23E6.05 |arx1||ribosomal export complex Arx1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 417
Score = 27.9 bits (59), Expect = 1.6
Identities = 18/66 (27%), Positives = 32/66 (48%), Gaps = 1/66 (1%)
Frame = +1
Query: 178 EWTSPEDREAYLN-TSQYIPQNVLISGINFYGENLFLTMPRMLAGVPATLATIPIQQVNT 354
EW +PE+ + T+ P NVL + +N + MP+ + ++++ PI +
Sbjct: 227 EWPAPEEETRKADVTNSLDPANVLSTELNTWH-----VMPKEAWLIDISMSSQPISSLKE 281
Query: 355 APKLKP 372
P LKP
Sbjct: 282 HPDLKP 287
>SPAC2C4.11c |rbp28||RNA-binding protein Rbp28|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 258
Score = 27.9 bits (59), Expect = 1.6
Identities = 18/59 (30%), Positives = 27/59 (45%), Gaps = 2/59 (3%)
Frame = +1
Query: 430 NIEIDRN-GIMWILDNGRVGTLTQNPDPKCPPSIVLIDLK-SEKLEMERIPFPPETVNP 600
N+ ID G + D+ GT+ PK P+ + K K +M R+P PP + P
Sbjct: 35 NVMIDTTRGEIEFSDSAVNGTMDIEGAPKFAPAKTSAEKKRGAKPQMRRVPIPPHRMTP 93
>SPCC11E10.04 |||mitochondrial ATPase expression protein
homolog|Schizosaccharomyces pombe|chr 3|||Manual
Length = 443
Score = 27.5 bits (58), Expect = 2.1
Identities = 21/74 (28%), Positives = 36/74 (48%), Gaps = 1/74 (1%)
Frame = +1
Query: 448 NGIMWILDNGRVGTLTQNPDPKCPPSIVLIDLKSEKLEMERIPFPPETVNPNTTYLNDLV 627
N I+ ++ R +L++ P S V + + L+M + FP + PN+T + L+
Sbjct: 170 NAILGVIGGNR-WSLSKFQSPAFRGSPVTEPVSGKMLDMIEVDFPNYDLVPNSTTYDYLM 228
Query: 628 VD-NRDGDYAYITD 666
V +RDG I D
Sbjct: 229 VGLSRDGKIREIYD 242
>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 3071
Score = 27.1 bits (57), Expect = 2.8
Identities = 24/109 (22%), Positives = 46/109 (42%), Gaps = 1/109 (0%)
Frame = +1
Query: 184 TSPEDREAYLNTSQYIPQNVLISGINFYGENLFLTMPRMLAGVPATLATIPIQQVNTAPK 363
T+P+ + ++T Q P +V GI E LT+ + V + L +P+ +N P
Sbjct: 1657 TNPDFLQLSVDTGQ--PSSVF--GIRICKEEFLLTVDGIRLLVISQLHDLPLLNINIKPF 1712
Query: 364 LKPFPSWADNAIGNCNALQFVQNIEIDRNGIMWILDNGRVGT-LTQNPD 507
W+ N + F+ + L+ +VG +++NP+
Sbjct: 1713 QVDLNDWSSELNSNAHLELFMNFYNFSNSHWEPFLEPWKVGVHISRNPN 1761
>SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1822
Score = 26.6 bits (56), Expect = 3.7
Identities = 16/49 (32%), Positives = 26/49 (53%)
Frame = -1
Query: 738 SVTEFPRSLVTSAEDNYTWIHGTVIGYVRVITVSIVYDEIIEVSRVGIN 592
++ E RSLVT + +H + GY+ + + I D I +SR+G N
Sbjct: 1483 TLVEALRSLVTLLTRRFDKLHNLLKGYLWLFSNCICRDN-ITLSRIGTN 1530
>SPCC417.06c |ppk35|mug27|serine/threonine protein kinase
Ppk35|Schizosaccharomyces pombe|chr 3|||Manual
Length = 624
Score = 26.6 bits (56), Expect = 3.7
Identities = 17/44 (38%), Positives = 22/44 (50%), Gaps = 5/44 (11%)
Frame = +2
Query: 467 SITDE-WALLPRTLTRSVLR-QSCSSILN---LKNLKWNGFRSR 583
S++DE W+ + + LT R QS I K L WNG R R
Sbjct: 433 SVSDEAWSFITKCLTEPTSRFQSTIEIQKHPFFKRLHWNGLRKR 476
>SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 644
Score = 25.8 bits (54), Expect = 6.5
Identities = 9/19 (47%), Positives = 14/19 (73%)
Frame = -1
Query: 504 RVLGKSAHSSVIENPHNTV 448
R++G +A + V NPHNT+
Sbjct: 47 RLIGDAAKNQVAMNPHNTI 65
>SPCC1322.09 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 455
Score = 25.8 bits (54), Expect = 6.5
Identities = 12/31 (38%), Positives = 15/31 (48%)
Frame = +1
Query: 286 TMPRMLAGVPATLATIPIQQVNTAPKLKPFP 378
T RM G P+ A +P + VNT P P
Sbjct: 417 TSKRMALGDPSLFAGLPEEDVNTGSSETPVP 447
>SPCC1739.13 |ssa2||heat shock protein Ssa2|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 647
Score = 25.8 bits (54), Expect = 6.5
Identities = 9/19 (47%), Positives = 14/19 (73%)
Frame = -1
Query: 504 RVLGKSAHSSVIENPHNTV 448
R++G +A + V NPHNT+
Sbjct: 47 RLIGDAAKNQVAMNPHNTI 65
>SPBC354.15 |fap1||L-pipecolate oxidase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 412
Score = 25.8 bits (54), Expect = 6.5
Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 5/64 (7%)
Frame = +3
Query: 132 PPTVSRCLRMERNRF---RMD--VSRRSRGLPQYEPIYTPKRPNIWHKLLRRKLVPDYAE 296
PPT L+ R+ + RM S + +P +P+ +P P LRR L Y E
Sbjct: 257 PPTPDGYLKFARHGYGFTRMQNLKSGKVESVPPKKPLVSPILPKEAELDLRRNLQRTYGE 316
Query: 297 DVSR 308
++S+
Sbjct: 317 EISQ 320
>SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1334
Score = 25.4 bits (53), Expect = 8.6
Identities = 17/37 (45%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Frame = -1
Query: 141 LSGVNIRLRECCLVLRGRGGDGGEEHYSYHHR-ERCQ 34
+SG NIRL RG+ GDGGE Y+ R E C+
Sbjct: 1278 ISGRNIRLLADG---RGKLGDGGEIFYACDQRGENCE 1311
>SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-glucan
synthase Ags1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 2410
Score = 25.4 bits (53), Expect = 8.6
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = +3
Query: 201 RGLPQYEPIYTPKRPNIWHKLLRRKLV 281
+GLP+Y + P + LLRRKLV
Sbjct: 2172 KGLPEYYRQLSGSIPAFYKSLLRRKLV 2198
>SPAC19B12.07c |||human ZNF277P homolog|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 319
Score = 25.4 bits (53), Expect = 8.6
Identities = 16/54 (29%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Frame = +3
Query: 216 YEPIYTPKRPNIWHKLLRRKLVPDYAEDVSRSAGDVSDNTDTASKH-GAETEAF 374
YEP++ + I H +K+ DY+ DV + ++ + T K AET++F
Sbjct: 237 YEPVFCFEHCKIVHDWDIKKIQKDYSLDVYGAIRVINYSRKTKKKSIPAETDSF 290
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,934,233
Number of Sequences: 5004
Number of extensions: 63642
Number of successful extensions: 205
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 197
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 203
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 351258950
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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