Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte2b02
(741 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_01_0371 - 2910771-2911226,2911804-2912067,2912185-2912226 31 0.73
06_01_0735 + 5431900-5432044,5432137-5432271,5432710-5432750,543... 29 2.9
11_06_0198 - 21158350-21159528 29 3.9
06_03_0897 + 25762154-25763056,25764189-25764800 29 3.9
02_01_0361 - 2600398-2602780,2602815-2603479,2603553-2603981 29 3.9
08_02_1483 - 27451391-27451794,27451883-27452387 29 5.1
01_06_0785 - 31985455-31988463 29 5.1
02_01_0353 + 2545982-2549833 28 6.8
01_07_0113 + 41158666-41159615,41159695-41160076 28 9.0
>05_01_0371 - 2910771-2911226,2911804-2912067,2912185-2912226
Length = 253
Score = 31.5 bits (68), Expect = 0.73
Identities = 20/57 (35%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Frame = +3
Query: 195 RSRGL-PQYEPIYTPKRPNIWHKLLRRKLVPDYAEDVSRSAGDVSDNTDTASKHGAE 362
R+R L +YEP+ K W L R LVP V +A +S +TA GA+
Sbjct: 155 RARDLYTRYEPVAERKAAEAWAALNRLPLVPSVTRAVLPAAASLSARYNTAVADGAK 211
>06_01_0735 +
5431900-5432044,5432137-5432271,5432710-5432750,
5433463-5433579,5433779-5433898,5433982-5434076,
5434149-5434242,5434592-5434723,5435191-5435303,
5435443-5435566,5435884-5436000,5436083-5436177,
5436269-5436362,5436655-5436780,5436854-5436966,
5437067-5437256,5437395-5437508,5437551-5437598
Length = 670
Score = 29.5 bits (63), Expect = 2.9
Identities = 12/28 (42%), Positives = 19/28 (67%)
Frame = -1
Query: 675 GTVIGYVRVITVSIVYDEIIEVSRVGIN 592
GT++G R++T YDE +E+S+ G N
Sbjct: 429 GTILGLARLLTGCSSYDEFLELSQRGNN 456
>11_06_0198 - 21158350-21159528
Length = 392
Score = 29.1 bits (62), Expect = 3.9
Identities = 14/34 (41%), Positives = 17/34 (50%), Gaps = 7/34 (20%)
Frame = -1
Query: 93 GRGGDGGEE-------HYSYHHRERCQRVAHEAR 13
G GG GG+ H +H R+RC R HE R
Sbjct: 344 GGGGHGGDHCRRQCQHHREWHERQRCMRDCHERR 377
>06_03_0897 + 25762154-25763056,25764189-25764800
Length = 504
Score = 29.1 bits (62), Expect = 3.9
Identities = 19/58 (32%), Positives = 28/58 (48%), Gaps = 5/58 (8%)
Frame = +1
Query: 181 WTSPEDREAYLNTSQYIPQNVLISGINFYGENLFLTMP-----RMLAGVPATLATIPI 339
W D + + ++IP+ +GINF G N F MP RM G+ LAT+ +
Sbjct: 401 WAINRDPKYWSQAEEFIPERFENAGINFKGTN-FEYMPFGAGRRMCPGMAFGLATLEL 457
>02_01_0361 - 2600398-2602780,2602815-2603479,2603553-2603981
Length = 1158
Score = 29.1 bits (62), Expect = 3.9
Identities = 20/77 (25%), Positives = 35/77 (45%)
Frame = +3
Query: 159 MERNRFRMDVSRRSRGLPQYEPIYTPKRPNIWHKLLRRKLVPDYAEDVSRSAGDVSDNTD 338
+ R + + ++ + +P+ +P+ PKR N W D ++D SA S
Sbjct: 144 LRRKKEEEEKAKEKKAVPEQQPVAAPKRRNRW----------DQSQDGDASAAVGSKKAK 193
Query: 339 TASKHGAETEAFPELGR 389
T+S A +A P +GR
Sbjct: 194 TSSDWDA-PDATPGIGR 209
>08_02_1483 - 27451391-27451794,27451883-27452387
Length = 302
Score = 28.7 bits (61), Expect = 5.1
Identities = 14/34 (41%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Frame = -3
Query: 730 GVSTISCHFCGRQLYLDPRHC-YRLCTRNHRLDC 632
G TISC CG Q D H R C ++ DC
Sbjct: 88 GGGTISCQDCGNQAKKDCTHLRCRTCCKSRGFDC 121
>01_06_0785 - 31985455-31988463
Length = 1002
Score = 28.7 bits (61), Expect = 5.1
Identities = 18/52 (34%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
Frame = -1
Query: 192 WRRPFEIDCVPFVDNAKLSGVNIRLRECCLVLRGR-GGDGGEEHYSYHHRER 40
WR E + PF NA G L E L+L G GDG E++ ++R
Sbjct: 348 WRGRVEKEEFPFPRNADFVGRKKELSELELILFGDVSGDGEREYFEIKTKQR 399
>02_01_0353 + 2545982-2549833
Length = 1283
Score = 28.3 bits (60), Expect = 6.8
Identities = 19/76 (25%), Positives = 35/76 (46%)
Frame = +3
Query: 162 ERNRFRMDVSRRSRGLPQYEPIYTPKRPNIWHKLLRRKLVPDYAEDVSRSAGDVSDNTDT 341
++ + + ++ + +P+ +P+ PKR N W D ++D SA S T
Sbjct: 169 QKKKEEEEKAKEKKAVPEQQPVAAPKRRNRW----------DQSQDGDASAAAGSKKAKT 218
Query: 342 ASKHGAETEAFPELGR 389
+S A +A P +GR
Sbjct: 219 SSDWDA-PDATPGIGR 233
>01_07_0113 + 41158666-41159615,41159695-41160076
Length = 443
Score = 27.9 bits (59), Expect = 9.0
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = -2
Query: 401 PMALSAQLGKGFSFGAVFTCCIGIVANVAGTP 306
P++L +QL FG+ F C+ + A TP
Sbjct: 187 PLSLPSQLAAQRRFGSTFALCLPVFATFGDTP 218
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,764,326
Number of Sequences: 37544
Number of extensions: 453488
Number of successful extensions: 1551
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1488
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1549
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1957111448
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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