Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte2b02
         (741 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_24680| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.0  
SB_39408| Best HMM Match : Cadherin (HMM E-Value=0)                    29   4.0  
SB_23967| Best HMM Match : SRCR (HMM E-Value=5.4e-11)                  29   5.2  
SB_14471| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.2  
SB_49821| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.1  
SB_14606| Best HMM Match : efhand (HMM E-Value=0.00036)                28   9.1  
SB_11734| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.1  
SB_48221| Best HMM Match : Caudal_act (HMM E-Value=5)                  28   9.1  
SB_41694| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.1  

>SB_24680| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 616

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 18/50 (36%), Positives = 25/50 (50%)
 Frame = +1

Query: 517 PPSIVLIDLKSEKLEMERIPFPPETVNPNTTYLNDLVVDNRDGDYAYITD 666
           PPS    D +S++ E + I  P   V   TT+  +L V N  G Y Y+ D
Sbjct: 355 PPSSE--DSQSDEDEAKSIEIPLSPVTKLTTFSANLNVQNLPGTYKYLAD 402


>SB_39408| Best HMM Match : Cadherin (HMM E-Value=0)
          Length = 2389

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 20/74 (27%), Positives = 32/74 (43%), Gaps = 1/74 (1%)
 Frame = +1

Query: 199  REAYLNTSQYIPQNVLISGINFYGENLFLTMPRMLAGVPATLATIPIQQVNTAPKLKPFP 378
            ++  L   Q+ P    ISG N+Y       M  +  G P  + T+PI Q++   K     
Sbjct: 1324 KDPKLPHDQFEPPLSSISGANYYDRRTQTMMVVLRGGEPVDIRTMPIIQLSIGIKAVRID 1383

Query: 379  SWAD-NAIGNCNAL 417
             + + N + N  AL
Sbjct: 1384 EFFEKNFVANLAAL 1397


>SB_23967| Best HMM Match : SRCR (HMM E-Value=5.4e-11)
          Length = 3369

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 18/54 (33%), Positives = 23/54 (42%)
 Frame = -1

Query: 741  FSVTEFPRSLVTSAEDNYTWIHGTVIGYVRVITVSIVYDEIIEVSRVGINRFWR 580
            FSV E   S V  +  N  WI      +VR++  SI       V   G NR+ R
Sbjct: 1051 FSVAEIVNSTVNGSRANGIWIETGDRKFVRILNSSITKSGERAVKLDGSNRYMR 1104


>SB_14471| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 327

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 8/36 (22%), Positives = 22/36 (61%)
 Frame = -1

Query: 648 ITVSIVYDEIIEVSRVGINRFWRERNPFHFKFFRFK 541
           +T+S++++ +  +S + ++R+     P H++ F  K
Sbjct: 102 VTISLMFNSVSNLSAISLDRYLAIETPLHYRAFTTK 137


>SB_49821| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 819

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 14/51 (27%), Positives = 25/51 (49%)
 Frame = +1

Query: 427 QNIEIDRNGIMWILDNGRVGTLTQNPDPKCPPSIVLIDLKSEKLEMERIPF 579
           Q +  D +  +   D+  +  L  NP  K PP I  I +K + L+ +++ F
Sbjct: 560 QPVHFDHHTSILATDHKPLLPLLNNPRAKLPPRIERIVMKMQNLDSQQLAF 610


>SB_14606| Best HMM Match : efhand (HMM E-Value=0.00036)
          Length = 633

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 15/27 (55%), Positives = 19/27 (70%)
 Frame = -3

Query: 703 CGRQLYLDPRHCYRLCTRNHRLDCLRR 623
           CG Q+ L+P  C RLCTR +  DCL+R
Sbjct: 508 CGNQI-LNP--C-RLCTRVYHSDCLKR 530


>SB_11734| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 445

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +1

Query: 604 TTYLNDLVVDNRDGDYAYITDNSAVDPGI 690
           + YLN+++ D RD    + T +  VDP I
Sbjct: 242 SNYLNEMIKDKRDSLSRWSTHSQTVDPSI 270


>SB_48221| Best HMM Match : Caudal_act (HMM E-Value=5)
          Length = 317

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = +1

Query: 298 MLAGVPATLATIPIQQVNTAPK 363
           M+ GVP  +  IPIQ   T PK
Sbjct: 279 MINGVPCFIVAIPIQSATTVPK 300


>SB_41694| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 141

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 4/56 (7%)
 Frame = +1

Query: 424 VQNIEIDR-NGIMWILDNGRVG---TLTQNPDPKCPPSIVLIDLKSEKLEMERIPF 579
           + N+ +D+  G +W     RV    T + N D +CP  +V + L  E  E +  PF
Sbjct: 42  LDNVNVDKLTGDLWFSVFPRVLDFLTFSTNLDFQCPSKVVSVKLGKEHAEGDPFPF 97


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,351,731
Number of Sequences: 59808
Number of extensions: 495377
Number of successful extensions: 1647
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1464
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1639
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1998111622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)