Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte2b02
         (741 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U67957-1|AAB07587.2|  324|Caenorhabditis elegans Hypothetical pr...    32   0.49 
Z99281-39|CAE45094.2|  665|Caenorhabditis elegans Hypothetical p...    31   0.86 
Z99281-38|CAE45095.2|  845|Caenorhabditis elegans Hypothetical p...    31   0.86 
Z99281-36|CAB16527.3|  862|Caenorhabditis elegans Hypothetical p...    31   0.86 
Z99281-34|CAJ44243.1|  917|Caenorhabditis elegans Hypothetical p...    31   0.86 
AY611484-1|AAT37523.1|  917|Caenorhabditis elegans epidermal gro...    31   0.86 
AL031632-2|CAA21005.2|  789|Caenorhabditis elegans Hypothetical ...    31   0.86 
Z32681-1|CAA83608.1|  761|Caenorhabditis elegans Hypothetical pr...    30   1.5  
Z83246-1|CAB05842.2|  312|Caenorhabditis elegans Hypothetical pr...    30   2.0  
AL032654-6|CAB54465.1|  467|Caenorhabditis elegans Hypothetical ...    29   3.5  
AC024137-2|AAK09075.1| 1603|Caenorhabditis elegans Vitellogenin ...    29   3.5  
AC024137-1|AAK09074.1| 1603|Caenorhabditis elegans Vitellogenin ...    29   3.5  
Z82089-5|CAD91717.1| 4541|Caenorhabditis elegans Hypothetical pr...    28   6.0  
Z82089-4|CAB54513.2| 4648|Caenorhabditis elegans Hypothetical pr...    28   6.0  
Z82089-2|CAB05003.2| 4530|Caenorhabditis elegans Hypothetical pr...    28   6.0  
Z81499-7|CAD91628.1| 4541|Caenorhabditis elegans Hypothetical pr...    28   6.0  
Z81499-6|CAB54224.2| 4648|Caenorhabditis elegans Hypothetical pr...    28   6.0  
Z81499-4|CAB04090.2| 4530|Caenorhabditis elegans Hypothetical pr...    28   6.0  
Z68161-7|CAD36488.1| 1130|Caenorhabditis elegans Hypothetical pr...    28   8.0  
Z68161-6|CAA92295.2|  782|Caenorhabditis elegans Hypothetical pr...    28   8.0  
X03044-1|CAA26849.1| 1603|Caenorhabditis elegans put. vitellogen...    28   8.0  
U42835-3|AAA83587.1| 1603|Caenorhabditis elegans Vitellogenin st...    28   8.0  
AF149286-1|AAF99085.1|  782|Caenorhabditis elegans KRP95 protein.      28   8.0  
AF125447-2|AAD12808.1|  250|Caenorhabditis elegans Hypothetical ...    28   8.0  

>U67957-1|AAB07587.2|  324|Caenorhabditis elegans Hypothetical
           protein K02H8.1 protein.
          Length = 324

 Score = 31.9 bits (69), Expect = 0.49
 Identities = 23/86 (26%), Positives = 37/86 (43%)
 Frame = +1

Query: 115 PKTDVNPRQFRVVYEWNAIDFEWTSPEDREAYLNTSQYIPQNVLISGINFYGENLFLTMP 294
           P  +V+ +Q RV   +++I    T    +  YL+  Q+I   +LI+G N       L+  
Sbjct: 64  PPPNVDVQQGRVTACYDSIKGRCTRENPKCKYLHPPQHIKDQLLINGRNHLALKNLLSAQ 123

Query: 295 RMLAGVPATLATIPIQQVNTAPKLKP 372
               G P     + +QQ   A  L P
Sbjct: 124 LNQTGTPMVNPMMALQQQAAAVNLIP 149


>Z99281-39|CAE45094.2|  665|Caenorhabditis elegans Hypothetical
           protein Y57G11C.24e protein.
          Length = 665

 Score = 31.1 bits (67), Expect = 0.86
 Identities = 18/69 (26%), Positives = 30/69 (43%), Gaps = 5/69 (7%)
 Frame = +3

Query: 132 PPTVSRCLRMERNRFRMDVSRRSRGLPQYEPIYTPKRP-----NIWHKLLRRKLVPDYAE 296
           PP V      E  R +    ++ R  P  EP+Y P+        IW +    +L+ +  E
Sbjct: 479 PPPVRTPTMEELLRMQQQQQQKQRKPPVEEPVYQPQPAQRAGLEIWRRNQNPQLIQEVTE 538

Query: 297 DVSRSAGDV 323
            V + +GD+
Sbjct: 539 TVGQHSGDI 547


>Z99281-38|CAE45095.2|  845|Caenorhabditis elegans Hypothetical
           protein Y57G11C.24d protein.
          Length = 845

 Score = 31.1 bits (67), Expect = 0.86
 Identities = 18/69 (26%), Positives = 30/69 (43%), Gaps = 5/69 (7%)
 Frame = +3

Query: 132 PPTVSRCLRMERNRFRMDVSRRSRGLPQYEPIYTPKRP-----NIWHKLLRRKLVPDYAE 296
           PP V      E  R +    ++ R  P  EP+Y P+        IW +    +L+ +  E
Sbjct: 659 PPPVRTPTMEELLRMQQQQQQKQRKPPVEEPVYQPQPAQRAGLEIWRRNQNPQLIQEVTE 718

Query: 297 DVSRSAGDV 323
            V + +GD+
Sbjct: 719 TVGQHSGDI 727


>Z99281-36|CAB16527.3|  862|Caenorhabditis elegans Hypothetical
           protein Y57G11C.24a protein.
          Length = 862

 Score = 31.1 bits (67), Expect = 0.86
 Identities = 18/69 (26%), Positives = 30/69 (43%), Gaps = 5/69 (7%)
 Frame = +3

Query: 132 PPTVSRCLRMERNRFRMDVSRRSRGLPQYEPIYTPKRP-----NIWHKLLRRKLVPDYAE 296
           PP V      E  R +    ++ R  P  EP+Y P+        IW +    +L+ +  E
Sbjct: 676 PPPVRTPTMEELLRMQQQQQQKQRKPPVEEPVYQPQPAQRAGLEIWRRNQNPQLIQEVTE 735

Query: 297 DVSRSAGDV 323
            V + +GD+
Sbjct: 736 TVGQHSGDI 744


>Z99281-34|CAJ44243.1|  917|Caenorhabditis elegans Hypothetical
           protein Y57G11C.24g protein.
          Length = 917

 Score = 31.1 bits (67), Expect = 0.86
 Identities = 18/69 (26%), Positives = 30/69 (43%), Gaps = 5/69 (7%)
 Frame = +3

Query: 132 PPTVSRCLRMERNRFRMDVSRRSRGLPQYEPIYTPKRP-----NIWHKLLRRKLVPDYAE 296
           PP V      E  R +    ++ R  P  EP+Y P+        IW +    +L+ +  E
Sbjct: 731 PPPVRTPTMEELLRMQQQQQQKQRKPPVEEPVYQPQPAQRAGLEIWRRNQNPQLIQEVTE 790

Query: 297 DVSRSAGDV 323
            V + +GD+
Sbjct: 791 TVGQHSGDI 799


>AY611484-1|AAT37523.1|  917|Caenorhabditis elegans epidermal growth
           factor receptorpathway substrate 8 splice variant A
           protein.
          Length = 917

 Score = 31.1 bits (67), Expect = 0.86
 Identities = 18/69 (26%), Positives = 30/69 (43%), Gaps = 5/69 (7%)
 Frame = +3

Query: 132 PPTVSRCLRMERNRFRMDVSRRSRGLPQYEPIYTPKRP-----NIWHKLLRRKLVPDYAE 296
           PP V      E  R +    ++ R  P  EP+Y P+        IW +    +L+ +  E
Sbjct: 731 PPPVRTPTMEELLRMQQQQQQKQRKPPVEEPVYQPQPAQRAGLEIWRRNQNPQLIQEVTE 790

Query: 297 DVSRSAGDV 323
            V + +GD+
Sbjct: 791 TVGQHSGDI 799


>AL031632-2|CAA21005.2|  789|Caenorhabditis elegans Hypothetical
           protein Y32B12B.2 protein.
          Length = 789

 Score = 31.1 bits (67), Expect = 0.86
 Identities = 15/39 (38%), Positives = 23/39 (58%)
 Frame = -1

Query: 606 RVGINRFWRERNPFHFKFFRFKIDEHD*RRTLRVRVLGK 490
           R+ I+RF+ E NPFH +FF F    H  +   ++R L +
Sbjct: 51  RLDIHRFFLESNPFHREFFGFAEKIHKKQLHDKIRELAR 89


>Z32681-1|CAA83608.1|  761|Caenorhabditis elegans Hypothetical
           protein F56F3.1 protein.
          Length = 761

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 10/51 (19%), Positives = 27/51 (52%)
 Frame = +1

Query: 421 FVQNIEIDRNGIMWILDNGRVGTLTQNPDPKCPPSIVLIDLKSEKLEMERI 573
           +   ++   +G+ W   NG V    Q+P  + PP++ ++  + ++ +M+ +
Sbjct: 608 YANMVQAMNSGVGWARGNGVVNGQQQHPQQQLPPNVQMLMAQHQQAQMQHL 658


>Z83246-1|CAB05842.2|  312|Caenorhabditis elegans Hypothetical
           protein ZK795.1 protein.
          Length = 312

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 5/57 (8%)
 Frame = +1

Query: 544 KSEKLEMERIPFPPET-----VNPNTTYLNDLVVDNRDGDYAYITDNSAVDPGIIVF 699
           K EK+E ERI +PP+      +     + +D  V+ RD D+    D + V+ G+  F
Sbjct: 149 KPEKIEKERIKYPPQAKMGMRILGYRIHRSDNQVEVRDKDWGKSFDETTVETGLREF 205


>AL032654-6|CAB54465.1|  467|Caenorhabditis elegans Hypothetical
           protein Y52B11A.4 protein.
          Length = 467

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 16/35 (45%), Positives = 20/35 (57%)
 Frame = +3

Query: 267 RRKLVPDYAEDVSRSAGDVSDNTDTASKHGAETEA 371
           RRK  P Y  D S S   VS +TD+A    +E+EA
Sbjct: 177 RRKRTPTYKSDKSPSPFPVSVSTDSARGSRSESEA 211


>AC024137-2|AAK09075.1| 1603|Caenorhabditis elegans Vitellogenin
            structural genes (yolk protein genes) protein 3 protein.
          Length = 1603

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 14/49 (28%), Positives = 25/49 (51%)
 Frame = +3

Query: 162  ERNRFRMDVSRRSRGLPQYEPIYTPKRPNIWHKLLRRKLVPDYAEDVSR 308
            E+ +F  ++ R  +G+P+YE +    R N  + +   KL P+     SR
Sbjct: 1178 EQKKFLRNIEREYKGIPEYELLIKAARLNQVNVVSEYKLTPESEYTFSR 1226


>AC024137-1|AAK09074.1| 1603|Caenorhabditis elegans Vitellogenin
            structural genes (yolk protein genes) protein 4 protein.
          Length = 1603

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 14/49 (28%), Positives = 25/49 (51%)
 Frame = +3

Query: 162  ERNRFRMDVSRRSRGLPQYEPIYTPKRPNIWHKLLRRKLVPDYAEDVSR 308
            E+ +F  ++ R  +G+P+YE +    R N  + +   KL P+     SR
Sbjct: 1178 EQKKFLRNIEREYKGIPEYELLIKAARLNQVNVVSEYKLTPESEYTFSR 1226


>Z82089-5|CAD91717.1| 4541|Caenorhabditis elegans Hypothetical
           protein ZK270.2e protein.
          Length = 4541

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
 Frame = +2

Query: 104 RQHSR-RRMLTPDSFALSTNGTQSISNGRLQKIARPTSI 217
           RQ  R RR LTP S+  S     ++S     K +RP+++
Sbjct: 395 RQFERYRRALTPKSYTSSRQDDDAVSTATFAKYSRPSTL 433


>Z82089-4|CAB54513.2| 4648|Caenorhabditis elegans Hypothetical
           protein ZK270.2d protein.
          Length = 4648

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
 Frame = +2

Query: 104 RQHSR-RRMLTPDSFALSTNGTQSISNGRLQKIARPTSI 217
           RQ  R RR LTP S+  S     ++S     K +RP+++
Sbjct: 384 RQFERYRRALTPKSYTSSRQDDDAVSTATFAKYSRPSTL 422


>Z82089-2|CAB05003.2| 4530|Caenorhabditis elegans Hypothetical
           protein ZK270.2a protein.
          Length = 4530

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
 Frame = +2

Query: 104 RQHSR-RRMLTPDSFALSTNGTQSISNGRLQKIARPTSI 217
           RQ  R RR LTP S+  S     ++S     K +RP+++
Sbjct: 384 RQFERYRRALTPKSYTSSRQDDDAVSTATFAKYSRPSTL 422


>Z81499-7|CAD91628.1| 4541|Caenorhabditis elegans Hypothetical
           protein ZK270.2e protein.
          Length = 4541

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
 Frame = +2

Query: 104 RQHSR-RRMLTPDSFALSTNGTQSISNGRLQKIARPTSI 217
           RQ  R RR LTP S+  S     ++S     K +RP+++
Sbjct: 395 RQFERYRRALTPKSYTSSRQDDDAVSTATFAKYSRPSTL 433


>Z81499-6|CAB54224.2| 4648|Caenorhabditis elegans Hypothetical
           protein ZK270.2d protein.
          Length = 4648

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
 Frame = +2

Query: 104 RQHSR-RRMLTPDSFALSTNGTQSISNGRLQKIARPTSI 217
           RQ  R RR LTP S+  S     ++S     K +RP+++
Sbjct: 384 RQFERYRRALTPKSYTSSRQDDDAVSTATFAKYSRPSTL 422


>Z81499-4|CAB04090.2| 4530|Caenorhabditis elegans Hypothetical
           protein ZK270.2a protein.
          Length = 4530

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
 Frame = +2

Query: 104 RQHSR-RRMLTPDSFALSTNGTQSISNGRLQKIARPTSI 217
           RQ  R RR LTP S+  S     ++S     K +RP+++
Sbjct: 384 RQFERYRRALTPKSYTSSRQDDDAVSTATFAKYSRPSTL 422


>Z68161-7|CAD36488.1| 1130|Caenorhabditis elegans Hypothetical
           protein F20C5.2b protein.
          Length = 1130

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 12/24 (50%), Positives = 17/24 (70%)
 Frame = -2

Query: 599 GLTVSGGNGIRSISSFSDLRSMST 528
           G++VSGGNG  + S F D R ++T
Sbjct: 612 GVSVSGGNGTPATSQFLDKRLVAT 635


>Z68161-6|CAA92295.2|  782|Caenorhabditis elegans Hypothetical
           protein F20C5.2a protein.
          Length = 782

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 12/24 (50%), Positives = 17/24 (70%)
 Frame = -2

Query: 599 GLTVSGGNGIRSISSFSDLRSMST 528
           G++VSGGNG  + S F D R ++T
Sbjct: 626 GVSVSGGNGTPATSQFLDKRLVAT 649


>X03044-1|CAA26849.1| 1603|Caenorhabditis elegans put. vitellogenin
            protein.
          Length = 1603

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 14/49 (28%), Positives = 24/49 (48%)
 Frame = +3

Query: 162  ERNRFRMDVSRRSRGLPQYEPIYTPKRPNIWHKLLRRKLVPDYAEDVSR 308
            E+ +F  ++ R  +G+P+YE +    R N  + +   KL P      SR
Sbjct: 1178 EQKKFIRNIEREYKGIPEYELLIKAARLNQVNVVSEYKLTPQSEYTFSR 1226


>U42835-3|AAA83587.1| 1603|Caenorhabditis elegans Vitellogenin
            structural genes (yolk protein genes) protein 5 protein.
          Length = 1603

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 14/49 (28%), Positives = 24/49 (48%)
 Frame = +3

Query: 162  ERNRFRMDVSRRSRGLPQYEPIYTPKRPNIWHKLLRRKLVPDYAEDVSR 308
            E+ +F  ++ R  +G+P+YE +    R N  + +   KL P      SR
Sbjct: 1178 EQKKFIRNIEREYKGIPEYELLIKAARLNQVNVVSEYKLTPQSEYTFSR 1226


>AF149286-1|AAF99085.1|  782|Caenorhabditis elegans KRP95 protein.
          Length = 782

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 12/24 (50%), Positives = 17/24 (70%)
 Frame = -2

Query: 599 GLTVSGGNGIRSISSFSDLRSMST 528
           G++VSGGNG  + S F D R ++T
Sbjct: 626 GVSVSGGNGTPATSQFLDKRLVAT 649


>AF125447-2|AAD12808.1|  250|Caenorhabditis elegans Hypothetical
           protein Y14H12B.1a protein.
          Length = 250

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 27/100 (27%), Positives = 39/100 (39%), Gaps = 3/100 (3%)
 Frame = +1

Query: 298 MLAGVPATLATIPIQQVNTAPKLKPFPSWADNAIGNCNALQFVQNIEID-RNGIMWILDN 474
           M A   A  A+ P  Q    PK K F    D     C+   F  +  +     +   LDN
Sbjct: 1   MSAKSRAKAASKPRHQSTPFPKTKQFKCTWDG----CDHRVFYTSRGLQWHTSVAHKLDN 56

Query: 475 GRV-GTLTQNPDPKCPPSIVLIDLKSEKLEMERIPFP-PE 588
             +  T  Q  D + PPS   ++L +  +    +P P PE
Sbjct: 57  SEIPSTRLQLSDDEAPPSSPSLNLSTRSMRKRSVPIPLPE 96


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,338,044
Number of Sequences: 27780
Number of extensions: 363873
Number of successful extensions: 1288
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 1214
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1283
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1745954468
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)