Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte2a20
         (510 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19C2.04c |ubp11||ubiquitin C-terminal hydrolase Ubp11|Schizo...    27   2.2  
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ...    26   2.9  
SPAC4G9.06c |||histone chaperone Chz1 |Schizosaccharomyces pombe...    25   8.7  
SPAC22E12.04 |ccs1|pccs, pccs|metallochaperone Ccs1 |Schizosacch...    25   8.7  
SPBC16E9.11c |pub3||ubiquitin-protein ligase E3|Schizosaccharomy...    25   8.7  

>SPBC19C2.04c |ubp11||ubiquitin C-terminal hydrolase
           Ubp11|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 350

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 13/36 (36%), Positives = 22/36 (61%)
 Frame = +1

Query: 226 AFSFLQNVRQTMELRKHDCRSPTLLRKFPSESLFVG 333
           A  FLQ++ +T+EL+K      + +  FP +S F+G
Sbjct: 131 AQEFLQHLVETLELQKPHTYKWSKVLSFPVDSPFIG 166


>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 3655

 Score = 26.2 bits (55), Expect = 2.9
 Identities = 14/57 (24%), Positives = 24/57 (42%)
 Frame = +1

Query: 298 LRKFPSESLFVGGNTKINSATGSKDYHIIY*QSYFYE*MKVYKNYK*NELYLHLLHC 468
           LR   S  + +GG       T  K +  +  Q  F+E  K +  ++  ++YL    C
Sbjct: 512 LRTCKSRCIEIGGEQFSGFLTNIKPFEAVTFQKLFFEVGKGFSYFRPEQVYLETFFC 568


>SPAC4G9.06c |||histone chaperone Chz1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 113

 Score = 24.6 bits (51), Expect = 8.7
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -2

Query: 101 PDLVSEKVGADFQDLASQSE 42
           PD+  E+   DFQDL+S  E
Sbjct: 22  PDIDDEEDDVDFQDLSSSGE 41


>SPAC22E12.04 |ccs1|pccs, pccs|metallochaperone Ccs1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 297

 Score = 24.6 bits (51), Expect = 8.7
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = +2

Query: 278 TAEAPLCCENSQVKVCS 328
           T+E P CC N +  VC+
Sbjct: 281 TSEKPSCCSNGKSTVCA 297


>SPBC16E9.11c |pub3||ubiquitin-protein ligase E3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 786

 Score = 24.6 bits (51), Expect = 8.7
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = +1

Query: 16  ERQLLLXRISDCDARSWKS 72
           E +LL+  ISD D   WKS
Sbjct: 660 ELELLIGGISDVDVEDWKS 678


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,805,972
Number of Sequences: 5004
Number of extensions: 30775
Number of successful extensions: 80
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 79
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 80
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 204242806
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)