Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte2a18
         (751 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC577.06c |||phosphatidylinositol kinase |Schizosaccharomyces ...    29   0.71 
SPAC6G9.01c |||conserved protein|Schizosaccharomyces pombe|chr 1...    28   1.2  
SPCC1259.11c |gyp2||GTPase activating protein Gyp2 |Schizosaccha...    27   2.9  
SPAPJ691.02 |||yippee-like protein|Schizosaccharomyces pombe|chr...    27   3.8  
SPBC19C7.10 |||transcription factor |Schizosaccharomyces pombe|c...    26   6.6  
SPAC22H10.09 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    25   8.7  

>SPBC577.06c |||phosphatidylinositol kinase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1877

 Score = 29.1 bits (62), Expect = 0.71
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = +3

Query: 645 WTLLECIPLKSRELYCELCDVHITSKSHADSHYAG 749
           W +  C  +   +L C+L D+H  S  H  ++YAG
Sbjct: 201 WAMEVCNTILVSDLPCKLIDLHNDSFLHHSNYYAG 235


>SPAC6G9.01c |||conserved protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 95

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = -3

Query: 416 SSEGVLVDDQTVQDLGRQTNIPHCNFQMHCC 324
           + EG LV D+   ++G+    P C F   CC
Sbjct: 64  TEEGFLVYDEEELNIGQGGGTPDCPFDCQCC 94


>SPCC1259.11c |gyp2||GTPase activating protein Gyp2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 720

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 14/39 (35%), Positives = 23/39 (58%)
 Frame = -1

Query: 670 SGIHSKRVQFKSTNTTVLRLYFVQYFSRNVFQTVLCKST 554
           S + +KR +FKS+    LR +  +   R+V+QT L  +T
Sbjct: 482 SFVSAKRKEFKSSVLYSLRCFTKRSHLRSVYQTTLLSNT 520


>SPAPJ691.02 |||yippee-like protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 131

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 13/30 (43%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
 Frame = +3

Query: 663 IPLKSRELYCELCDVHITSKSHADSH-YAG 749
           + LKSR   C  C  H+  K H  SH Y G
Sbjct: 7   VHLKSRCYVCAKCKTHLAFKGHLLSHDYRG 36


>SPBC19C7.10 |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 432

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = +2

Query: 203 SIMSIPFYKMNSREEYEMNED 265
           SI S P  K  SRE++E NED
Sbjct: 366 SIRSSPKSKKRSREDFEENED 386


>SPAC22H10.09 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 646

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 9/29 (31%), Positives = 18/29 (62%)
 Frame = -1

Query: 181 MNCFNLYNVITDFFQY*MSTLQFRSLNKN 95
           +NC++L NV+ ++       L F+ +N+N
Sbjct: 415 LNCYSLLNVLANYVVVFKDRLIFQEINQN 443


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,202,120
Number of Sequences: 5004
Number of extensions: 67970
Number of successful extensions: 174
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 166
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 174
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)