Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte2a18
         (751 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0162 + 1138420-1138640,1138788-1138830,1139449-1140971,114...    31   0.74 
10_08_0433 - 17889072-17889632,17890437-17890514,17892196-17892393     29   5.2  
05_04_0342 - 20425141-20425311,20425415-20425558,20426506-204266...    29   5.2  
04_04_1275 + 32321161-32321285,32321849-32322071,32322187-323223...    29   5.2  
09_04_0156 - 15190502-15190903,15191149-15191154,15191512-15192351     28   6.9  
01_06_1593 + 38502884-38502993,38503580-38503665,38504352-385044...    28   9.1  

>07_01_0162 +
           1138420-1138640,1138788-1138830,1139449-1140971,
           1141770-1142063,1142145-1142337,1142624-1142694,
           1142781-1144200
          Length = 1254

 Score = 31.5 bits (68), Expect = 0.74
 Identities = 18/52 (34%), Positives = 24/52 (46%), Gaps = 3/52 (5%)
 Frame = -1

Query: 535 NSLHSV--RSSHSRAIRTKSSSEWVLIG*RPKHWSWS-WSKHEVRRGSWWMI 389
           +S H V  RS H  A     +    + G RP HW  S   +   RRG WW++
Sbjct: 520 SSAHEVFWRSCHGVAYLCMENVVTEMAGCRPTHWPRSALVRQRRRRGGWWLV 571


>10_08_0433 - 17889072-17889632,17890437-17890514,17892196-17892393
          Length = 278

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +3

Query: 678 RELYCELCDVHITSKSHADSHYAG 749
           + + C+LCDV + S+ +   HYAG
Sbjct: 226 KNVRCQLCDVLLASELNVAQHYAG 249


>05_04_0342 -
           20425141-20425311,20425415-20425558,20426506-20426622,
           20426719-20426835,20427533-20427678,20428208-20428293,
           20428780-20428889
          Length = 296

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = +2

Query: 461 NQNPFGRGFGPDGPAMRRPNRVERVKRYLMRCGLTKDSLK 580
           N N  GR  GP G +++R     + + Y+   G  KDS+K
Sbjct: 153 NYNFVGRLLGPRGNSLKRVEATTQCRVYIRGRGSVKDSVK 192


>04_04_1275 +
           32321161-32321285,32321849-32322071,32322187-32322309,
           32322391-32322519,32322939-32323024,32323233-32323356,
           32323531-32323579,32323808-32323890,32323975-32324042,
           32324187-32324264,32324460-32324547,32324640-32324756,
           32324844-32325176
          Length = 541

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 15/49 (30%), Positives = 22/49 (44%), Gaps = 1/49 (2%)
 Frame = -3

Query: 281 LQSSHNLHSFHILHGCSFCRTE-YS*C*NRYWNVYELFQSIQRYYRFFS 138
           L+  H+LH+FH + G      E Y      +WN + +    Q  Y F S
Sbjct: 250 LELPHSLHAFHRVSGSDSLNMEGYHTYRGGFWNYFSMGMDAQVSYEFHS 298


>09_04_0156 - 15190502-15190903,15191149-15191154,15191512-15192351
          Length = 415

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = +3

Query: 672 KSRELYCELCDVHITSKSHADSHYAG 749
           ++R  YC++C+V  +S+    SH AG
Sbjct: 378 QNRMYYCDICEVRCSSEKMMASHLAG 403


>01_06_1593 +
           38502884-38502993,38503580-38503665,38504352-38504497,
           38504817-38504933,38505028-38505144,38505858-38506001,
           38506099-38506251
          Length = 290

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = +2

Query: 461 NQNPFGRGFGPDGPAMRRPNRVERVKRYLMRCGLTKDSLK 580
           N N  GR  GP G +++R     + + Y+   G  KDS+K
Sbjct: 153 NYNFVGRLLGPRGNSLKRVEASTQCRVYIRGRGSVKDSVK 192


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,561,305
Number of Sequences: 37544
Number of extensions: 401139
Number of successful extensions: 984
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 952
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 982
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1992480932
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)