Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte2a18
         (751 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL110478-11|CAB54347.2| 1435|Caenorhabditis elegans Hypothetical...    31   0.87 
U21321-6|AAG00046.1|  206|Caenorhabditis elegans Hypothetical pr...    30   2.0  
U21322-3|AAA62541.1| 1425|Caenorhabditis elegans Hypothetical pr...    29   2.7  
U10438-13|ABB88243.1|  235|Caenorhabditis elegans Hypothetical p...    29   2.7  

>AL110478-11|CAB54347.2| 1435|Caenorhabditis elegans Hypothetical
            protein Y26D4A.9 protein.
          Length = 1435

 Score = 31.1 bits (67), Expect = 0.87
 Identities = 20/54 (37%), Positives = 28/54 (51%)
 Frame = +2

Query: 503  AMRRPNRVERVKRYLMRCGLTKDSLKNIPREILHKIEPEYCGVCALELDSFGMY 664
            AM R +R     R+L +C   ++SLKN   EIL   E E   +  L LD+  +Y
Sbjct: 980  AMLRYSRANN--RHLKKCNTEEESLKNYEEEILKNYEEE--SIYLLYLDANNLY 1029


>U21321-6|AAG00046.1|  206|Caenorhabditis elegans Hypothetical
           protein ZK177.3 protein.
          Length = 206

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 15/32 (46%), Positives = 17/32 (53%)
 Frame = +3

Query: 654 LECIPLKSRELYCELCDVHITSKSHADSHYAG 749
           LEC   K +   CELCD   T K+   SHY G
Sbjct: 30  LEC---KHKYFRCELCDFKSTQKTGLTSHYHG 58


>U21322-3|AAA62541.1| 1425|Caenorhabditis elegans Hypothetical
           protein K10D2.3 protein.
          Length = 1425

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = +3

Query: 687 YCELCDVHITSKSHADSH 740
           YCE CD HI +  HA +H
Sbjct: 273 YCEKCDYHINTIGHAKAH 290


>U10438-13|ABB88243.1|  235|Caenorhabditis elegans Hypothetical
           protein B0280.17 protein.
          Length = 235

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 15/40 (37%), Positives = 20/40 (50%)
 Frame = +2

Query: 461 NQNPFGRGFGPDGPAMRRPNRVERVKRYLMRCGLTKDSLK 580
           N NP GR  GP G  +R+  +    K ++   G TKD  K
Sbjct: 127 NTNPVGRLIGPRGMTIRQLEKDLGCKLFIRGKGCTKDDAK 166


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,532,016
Number of Sequences: 27780
Number of extensions: 374409
Number of successful extensions: 1015
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 979
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1015
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1777507862
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)