Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte2a15
         (673 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1840.03 |sal3|pse1|karyopherin Sal3|Schizosaccharomyces pomb...    27   2.5  
SPAC637.04 |||Cargo-transport protein Ypp1 |Schizosaccharomyces ...    25   7.5  
SPCC1223.06 |tea1|alp8|cell end marker Tea1|Schizosaccharomyces ...    25   7.5  
SPAC23D3.06c |nup146||nucleoporin Nup146|Schizosaccharomyces pom...    25   9.9  

>SPCC1840.03 |sal3|pse1|karyopherin Sal3|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1095

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 3/40 (7%)
 Frame = -1

Query: 640 RVNWTVRDVR*GRIQSDVGP---VRYPSTMTLAFVPVIQS 530
           RV W   +   G++ +D  P   V+YPS +  A VPV++S
Sbjct: 427 RVRWAACNAV-GQMSTDFAPDMQVKYPSRILEALVPVLES 465


>SPAC637.04 |||Cargo-transport protein Ypp1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 862

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 12/50 (24%), Positives = 24/50 (48%)
 Frame = -1

Query: 601 IQSDVGPVRYPSTMTLAFVPVIQSVHVDRIAEYVRCYVTIAYRRHESIVG 452
           +  D  P   P T T   + ++Q+  +  +A+Y +    +AY+   S +G
Sbjct: 128 VDLDWSPQGIPWTETSTGICILQATVLSSLAQYAQANDEVAYQYVRSAIG 177


>SPCC1223.06 |tea1|alp8|cell end marker Tea1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1147

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 10/35 (28%), Positives = 19/35 (54%)
 Frame = +2

Query: 524 MNGLYNGNKGESHRARIPNWANIRLNSTLSHIPYS 628
           M+ L+  NKG +H+   PN++      + S + +S
Sbjct: 1   MSFLFKRNKGSAHKPTKPNFSKTSTTPSTSQLKHS 35


>SPAC23D3.06c |nup146||nucleoporin Nup146|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1325

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = +2

Query: 389 NDEEPEDINNDPKVFSTFRLPTNDRFMASIGNGHVA 496
           ND E  + +N+ K F+T     ND+   S G   VA
Sbjct: 781 NDNEKAEESNETKGFNTTIAKQNDKSSKSEGKASVA 816


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,601,990
Number of Sequences: 5004
Number of extensions: 50709
Number of successful extensions: 125
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 125
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 307866294
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)