Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte2a15
         (673 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0032 - 247971-248107,248369-248468,248861-248959,249617-24...    32   0.36 
11_04_0260 - 15509658-15509780,15510092-15510161,15510265-155104...    29   3.4  
01_01_1084 - 8521796-8522389,8522503-8522983,8523084-8523190           29   3.4  
10_07_0032 + 12096290-12097042,12097056-12098066,12110194-12110454     29   4.5  
03_02_0532 + 9255634-9257034,9257234-9257347,9257975-9258239,925...    29   4.5  
11_04_0140 - 13945911-13946195,13946290-13946772                       28   5.9  
10_02_0200 - 6672743-6673717,6676257-6676634,6677017-6677301,667...    28   5.9  
03_05_0357 - 23424234-23424567,23424796-23424923,23425024-234252...    28   5.9  

>01_01_0032 -
           247971-248107,248369-248468,248861-248959,249617-249781,
           249860-249940,250316-250384,250695-250790,252232-252282,
           253361-253419,254255-254324,254325-254553,254674-255098,
           255361-255441
          Length = 553

 Score = 32.3 bits (70), Expect = 0.36
 Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
 Frame = -1

Query: 301 HLFISRQKSPHPREFNKHTTNIEILN-IYHL*NKTNKTIYEFVKKM 167
           H   + Q S H    + H+ N+  L+ +  + NK N T  +FVKKM
Sbjct: 403 HFHTNPQNSSHGNFISSHSNNVHALDQLRTIKNKANSTSQQFVKKM 448


>11_04_0260 -
           15509658-15509780,15510092-15510161,15510265-15510438,
           15511098-15511528
          Length = 265

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 14/40 (35%), Positives = 22/40 (55%)
 Frame = -1

Query: 343 DDQSGDGE*AHHGRHLFISRQKSPHPREFNKHTTNIEILN 224
           DD+SG G  + +G ++ +SR    HP+  N  T    +LN
Sbjct: 129 DDRSGYGAASRYGNNIAVSRPAGRHPQGLNSLTCE-RVLN 167


>01_01_1084 - 8521796-8522389,8522503-8522983,8523084-8523190
          Length = 393

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 15/39 (38%), Positives = 20/39 (51%)
 Frame = -1

Query: 448 QPECGKNFRIVVDILRLFIISSRMATFATFSCHYNDDQS 332
           QP  G   R+  DI  L  + SR+AT  T SC  + D +
Sbjct: 212 QPSPGTRCRVCSDIASLDGLYSRLATLCTISCWAHADHA 250


>10_07_0032 + 12096290-12097042,12097056-12098066,12110194-12110454
          Length = 674

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 25/94 (26%), Positives = 41/94 (43%), Gaps = 2/94 (2%)
 Frame = -1

Query: 490 VTIAYRRHESIVGWQPECGKNFRIVVDILRLFIISSRMATFATFSCHYNDDQSGDGE*AH 311
           +T   ++ E  V W P+C K FR + + L    +     T   F  + +  + G G    
Sbjct: 11  MTQLLKKEEKFV-WSPQCEKAFRTLKEKLVASPVLILPDTRKDFIVYCDASRQGLGCVLM 69

Query: 310 HGRHL--FISRQKSPHPREFNKHTTNIEILNIYH 215
              H+  + SRQ  PH  E N  T ++E+  + H
Sbjct: 70  QDGHVVAYASRQLRPH--EGNYPTHDLELAAVVH 101


>03_02_0532 +
           9255634-9257034,9257234-9257347,9257975-9258239,
           9258346-9258461
          Length = 631

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 14/48 (29%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
 Frame = +2

Query: 452 TNDRFMASIGNGHVAANVFSDTVYMNGLYNGNKGESHRARI-PNWANI 592
           T+ RF  + G+   A++ FSD  +M+G+ +     S  AR+ P+++++
Sbjct: 124 TSGRFSEASGSASTASDRFSDHPFMDGMLDRASSASSTARLMPSFSHL 171


>11_04_0140 - 13945911-13946195,13946290-13946772
          Length = 255

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = -1

Query: 475 RRHESIVGWQPECGKNFRIVVDILRLFIISSRMATFAT 362
           R HE + G +  C +NFR+ VDI    +   R   + T
Sbjct: 46  RVHEILTGHERLCKRNFRMEVDIFHALVNKLREKEYIT 83


>10_02_0200 -
           6672743-6673717,6676257-6676634,6677017-6677301,
           6677420-6677570,6677696-6677930,6678689-6678764
          Length = 699

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +1

Query: 439 IQVANQR*IHGVYRQWSRSSERIQRYGL 522
           + ++ QR IH V  +WSR S+   RY L
Sbjct: 144 VDLSGQRFIHSVRNKWSRMSKITSRYPL 171


>03_05_0357 -
           23424234-23424567,23424796-23424923,23425024-23425205,
           23425255-23425504
          Length = 297

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = -1

Query: 475 RRHESIVGWQPECGKNFRIVVDILRLFIISSRMATFAT 362
           R HE + G +  C +NFR+ VDI    +   R   + T
Sbjct: 46  RVHEILTGHERLCKRNFRMEVDIFHALVNKLREKEYLT 83


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,712,332
Number of Sequences: 37544
Number of extensions: 310827
Number of successful extensions: 677
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 665
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 677
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1703141568
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)