Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte2a08
         (756 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC28F2.08c |||HRD ubiquitin ligase complex subunit |Schizosacc...    27   2.2  
SPAC1A6.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    27   3.8  
SPAC19G12.02c |pms1||MutL family mismatch-repair protein Pms1|Sc...    26   6.7  
SPAC23C11.15 |pst2||Clr6 histone deacetylase complex subunit Pst...    26   6.7  
SPCC11E10.07c |||translation initiation factor eIF2B alpha subun...    26   6.7  
SPAC4F10.07c |atg13|apg13, mug78|autophagy associated protein At...    25   8.8  
SPAP8A3.14c |||mitochondrial inner membrane protein |Schizosacch...    25   8.8  

>SPBC28F2.08c |||HRD ubiquitin ligase complex subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 713

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 16/53 (30%), Positives = 22/53 (41%)
 Frame = +3

Query: 594 DIYSDAGPGSSLDLDTNRPVFSEDTYRPDNEGPGPNLEEPIPARPSVSYDDLR 752
           DI S AGP S L  +           +PD +    +L  P       SY+D+R
Sbjct: 611 DILSPAGPDSQLPPEPPTLQVDRTPQQPDPQETSESLPSPNTEEMGESYNDIR 663


>SPAC1A6.07 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 636

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 12/41 (29%), Positives = 20/41 (48%)
 Frame = +3

Query: 564 TPSMYGATTNDIYSDAGPGSSLDLDTNRPVFSEDTYRPDNE 686
           TP+    T N+ Y+ A P  S   D    VFS+ ++  + +
Sbjct: 469 TPTASSTTANNAYASAEPHPSAFPDDMNSVFSDSSFERERD 509


>SPAC19G12.02c |pms1||MutL family mismatch-repair protein
           Pms1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 794

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
 Frame = +3

Query: 618 GSSLDLDTNRPVFSEDTYRPDNEGPGPNLEEP--IPARPSVSYDD 746
           G ++    ++ +FS  +  PD+ G   + E P  IPA  S + DD
Sbjct: 335 GHAISCSRSQSIFSYSSQIPDSSGDSTDQELPQSIPATESETSDD 379


>SPAC23C11.15 |pst2||Clr6 histone deacetylase complex subunit
           Pst2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1075

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 17/40 (42%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
 Frame = +3

Query: 486 LPGSYIGQILRDRKNGKIGGT--SMPVQTPSMYGATTNDI 599
           LP SY   +     N  +  T  S PV TPS Y AT ND+
Sbjct: 99  LPSSYKYLLSNSGANFTLQFTTPSGPVSTPSTYVATYNDL 138


>SPCC11E10.07c |||translation initiation factor eIF2B alpha
           subunit|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 341

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 14/45 (31%), Positives = 21/45 (46%)
 Frame = +3

Query: 615 PGSSLDLDTNRPVFSEDTYRPDNEGPGPNLEEPIPARPSVSYDDL 749
           P S  D+  +RP+   D   P+   P P   EPIP      +++L
Sbjct: 254 PLSQYDIPFSRPILEFDDPSPETVHPEP---EPIPTPSDAIHNEL 295


>SPAC4F10.07c |atg13|apg13, mug78|autophagy associated protein Atg13
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 758

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = +1

Query: 163 RKIVIVTRSLAPATHVLPSETSHTHCATTNSHKTKLK 273
           +K+V++ RSL   TH++P     +      +H T LK
Sbjct: 172 KKLVVLFRSLYTYTHLMPLWKLKSKIHKLRAHGTSLK 208


>SPAP8A3.14c |||mitochondrial inner membrane protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 677

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = +3

Query: 276 LEECDKESFYQRCLPFSALFASLTYAAVK 362
           L+E  ++SFY+  L  ++L  SLTY  ++
Sbjct: 481 LDETTRKSFYRIILSSNSLSTSLTYPLIE 509


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,359,907
Number of Sequences: 5004
Number of extensions: 74545
Number of successful extensions: 224
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 216
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 224
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 361294920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)