Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte2a05
         (272 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0998 - 29996117-29996242,29996345-29996486,29996613-299968...    28   1.2  
02_02_0065 + 6490490-6491552,6491754-6493601,6493857-6494236           26   4.7  
07_01_1120 - 10338265-10338624,10338739-10338873,10339411-10340451     25   8.3  

>04_04_0998 -
           29996117-29996242,29996345-29996486,29996613-29996812,
           29997112-29997497,29997769-29998318,29998949-29999296
          Length = 583

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = -2

Query: 265 FMEDSHNCLLCSKL*KHLNFITIYQSYIF 179
           F+ED H C++C    K  NFI +   ++F
Sbjct: 284 FLEDLHMCMICLSQSKGSNFIRLPCQHLF 312


>02_02_0065 + 6490490-6491552,6491754-6493601,6493857-6494236
          Length = 1096

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = -1

Query: 113 IKTSMCCSERTKKRNLKLIL 54
           +K  +C +  TKKR+LKLI+
Sbjct: 709 LKLPLCSTHSTKKRSLKLIV 728


>07_01_1120 - 10338265-10338624,10338739-10338873,10339411-10340451
          Length = 511

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +2

Query: 29  LYLDNYKIIK*ALNFVSLFFQSNT 100
           L LDNY+ +K  +NF + F ++ T
Sbjct: 420 LVLDNYRGLKSQINFATFFIRNAT 443


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,812,905
Number of Sequences: 37544
Number of extensions: 34811
Number of successful extensions: 42
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 42
length of database: 14,793,348
effective HSP length: 69
effective length of database: 12,202,812
effective search space used: 256259052
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)