Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte2a05
         (272 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024808-1|AAK29927.1|  309|Caenorhabditis elegans Hypothetical ...    25   5.5  
AY152852-1|AAN62580.1|  770|Caenorhabditis elegans suppressor of...    25   7.3  
AL032636-3|CAA21604.1|  770|Caenorhabditis elegans Hypothetical ...    25   7.3  
Z71262-4|CAA95814.1|  775|Caenorhabditis elegans Hypothetical pr...    25   9.7  

>AC024808-1|AAK29927.1|  309|Caenorhabditis elegans Hypothetical
           protein Y53G8AM.4 protein.
          Length = 309

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = +2

Query: 2   IS*NFNKINLYLDNYKIIK*ALNFVSLFFQ 91
           I+ NFN I+ Y+ N  I   A+ F  LFF+
Sbjct: 163 INLNFNVISFYMVNSLIFYLAITFSLLFFK 192


>AY152852-1|AAN62580.1|  770|Caenorhabditis elegans suppressor of
           presenilin 5 protein.
          Length = 770

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = +2

Query: 11  NFNKINLYLDNYKIIK*ALNF 73
           N  KI+L+LD+YK    ALN+
Sbjct: 227 NEEKIHLFLDHYKSAHGALNY 247


>AL032636-3|CAA21604.1|  770|Caenorhabditis elegans Hypothetical
           protein Y40B1B.6 protein.
          Length = 770

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = +2

Query: 11  NFNKINLYLDNYKIIK*ALNF 73
           N  KI+L+LD+YK    ALN+
Sbjct: 227 NEEKIHLFLDHYKSAHGALNY 247


>Z71262-4|CAA95814.1|  775|Caenorhabditis elegans Hypothetical
           protein F22D6.5 protein.
          Length = 775

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 8/13 (61%), Positives = 11/13 (84%)
 Frame = -1

Query: 233 LKIIKTFKFHNHL 195
           L++ +TFK HNHL
Sbjct: 518 LRLFRTFKHHNHL 530


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,980,704
Number of Sequences: 27780
Number of extensions: 45116
Number of successful extensions: 84
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 84
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 84
length of database: 12,740,198
effective HSP length: 69
effective length of database: 10,823,378
effective search space used: 227290938
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)