Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte2a04
(736 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0646 + 5474234-5476189 34 0.13
03_03_0277 + 16116017-16117424,16117461-16117660,16117739-161178... 31 1.3
05_04_0077 - 17712043-17712246,17712487-17712522,17712746-177129... 30 1.7
05_03_0071 - 8044217-8045142,8045303-8045411,8045634-8046854 30 1.7
11_08_0085 + 28264399-28266186 29 3.8
09_03_0042 + 11842263-11842698,11842799-11842896,11843082-118432... 28 6.7
05_06_0191 - 26265460-26267016,26267858-26268356,26268789-262688... 28 6.7
11_03_0148 + 10762150-10762264,10762347-10762776,10764653-107647... 28 8.8
08_01_0469 - 4127950-4127988,4127989-4128264,4128845-4130861,413... 28 8.8
03_02_0855 + 11809135-11809348,11809425-11809501,11809625-118096... 28 8.8
>12_01_0646 + 5474234-5476189
Length = 651
Score = 33.9 bits (74), Expect = 0.13
Identities = 16/63 (25%), Positives = 33/63 (52%)
Frame = +1
Query: 502 QKERAEDAWKQYINELKCKHGYNSRADDFRVPEGKADDYPDICDLYNTRFSWNQSRQCQN 681
+ ERA+DA ++Y++ L K + + +FR + +Y + DL + +W S +C
Sbjct: 493 EAERAQDAAEEYLDLLNRKSFFELKLRNFRFGRNECHEYFVMHDLMHDLATWVSSGECAR 552
Query: 682 LLE 690
+ +
Sbjct: 553 IAD 555
>03_03_0277 +
16116017-16117424,16117461-16117660,16117739-16117816,
16118381-16118533,16118969-16119280,16119390-16119563,
16120411-16120498,16120598-16120611
Length = 808
Score = 30.7 bits (66), Expect = 1.3
Identities = 21/79 (26%), Positives = 37/79 (46%), Gaps = 1/79 (1%)
Frame = +1
Query: 112 NSNINNCKKRKHDHR-IFEHNSNCKLIDLNTNAKRVIEVHDSNGINNKIKTREITDEINV 288
+SN NN H H ++E K+ L+ +++ + S+ K+KT +E
Sbjct: 344 SSNSNNNSLTMHIHLPVYE-----KVASLSGGSEKTVNQPTSHDNKMKLKTYSTQEEAVS 398
Query: 289 HNTEACSTETYKQLVDVPT 345
H+ TE +K+ +D PT
Sbjct: 399 HSASHNKTEMHKRSLDFPT 417
>05_04_0077 - 17712043-17712246,17712487-17712522,17712746-17712900,
17713431-17713591,17713950-17714110,17714188-17715657,
17715704-17715998,17716461-17717737,17717826-17718137,
17718223-17718356,17718449-17718521,17719994-17720059,
17720748-17720936
Length = 1510
Score = 30.3 bits (65), Expect = 1.7
Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 3/55 (5%)
Frame = +1
Query: 100 LDKYNSNINNCKKR---KHDHRIFEHNSNCKLIDLNTNAKRVIEVHDSNGINNKI 255
L +YNSN ++ K KH ++ N + IDL TN V G+NNK+
Sbjct: 1169 LPQYNSNQSDQAKLSSGKHPTQVRPDKGNVEYIDLKTNPSTVAGSKLLPGLNNKV 1223
>05_03_0071 - 8044217-8045142,8045303-8045411,8045634-8046854
Length = 751
Score = 30.3 bits (65), Expect = 1.7
Identities = 24/85 (28%), Positives = 39/85 (45%), Gaps = 4/85 (4%)
Frame = +1
Query: 322 KQLVDVPTELNEYLIDIGKCAEKSTYCRPAIDYYSQAFVFKTMSRNARLQRLLKNIVV-- 495
+++ +P +LN Y+ D+GK E T R D +SR + RLLK ++V
Sbjct: 629 EEMNQLPFQLNRYISDVGK-DENFTNLRSLADLSMMLVKTNKVSRYDLVYRLLKLVLVLP 687
Query: 496 --SRQKERAEDAWKQYINELKCKHG 564
+ ER + N+L+ K G
Sbjct: 688 VATAGVERVFSSMNYIKNKLRSKMG 712
>11_08_0085 + 28264399-28266186
Length = 595
Score = 29.1 bits (62), Expect = 3.8
Identities = 14/54 (25%), Positives = 26/54 (48%)
Frame = +1
Query: 232 SNGINNKIKTREITDEINVHNTEACSTETYKQLVDVPTELNEYLIDIGKCAEKS 393
+N + RE+ DE+ +H+ E C + K +D+ E ++ + GK S
Sbjct: 157 TNAGTEEAGARELLDELMLHSHETCIKDMEKLRIDMDNEADKTIKKKGKKGSSS 210
>09_03_0042 +
11842263-11842698,11842799-11842896,11843082-11843217,
11843349-11843509,11843603-11843753,11843855-11843952,
11844142-11844277,11844404-11844532,11844622-11844720,
11844814-11844909,11845002-11845100,11845201-11845296,
11846394-11846628,11846752-11846873,11846993-11847114,
11847275-11847345,11847940-11848027,11848374-11848439,
11848676-11848795
Length = 852
Score = 28.3 bits (60), Expect = 6.7
Identities = 18/75 (24%), Positives = 30/75 (40%)
Frame = +1
Query: 493 VSRQKERAEDAWKQYINELKCKHGYNSRADDFRVPEGKADDYPDICDLYNTRFSWNQSRQ 672
VS KE+++ + + + E P GK + +C LYN SW ++
Sbjct: 677 VSNAKEQSQGSTRNHQTESSKDSAPAMCTTSSDPPSGKGETADQVCILYN--LSWKKTAV 734
Query: 673 CQNLLEDFYGSYERQ 717
C+ L Y E +
Sbjct: 735 CEFKLSSDYRVVEEK 749
>05_06_0191 -
26265460-26267016,26267858-26268356,26268789-26268859,
26269079-26269515,26269626-26269681,26269682-26270479,
26270918-26270973
Length = 1157
Score = 28.3 bits (60), Expect = 6.7
Identities = 16/40 (40%), Positives = 24/40 (60%)
Frame = +1
Query: 457 NARLQRLLKNIVVSRQKERAEDAWKQYINELKCKHGYNSR 576
NA +RLL I +SR + E+ W+ Y +EL+ HG + R
Sbjct: 271 NAFHKRLLLVIELSRYAD--EEKWRLYSSELRMPHGTHLR 308
>11_03_0148 +
10762150-10762264,10762347-10762776,10764653-10764735,
10764980-10765068,10765178-10765251,10765333-10765383,
10765687-10765763,10766237-10767012
Length = 564
Score = 27.9 bits (59), Expect = 8.8
Identities = 15/56 (26%), Positives = 25/56 (44%)
Frame = +1
Query: 82 YDEQFFLDKYNSNINNCKKRKHDHRIFEHNSNCKLIDLNTNAKRVIEVHDSNGINN 249
YD + ++ N I R+ +H N I++NT V+ H +NG+ N
Sbjct: 337 YDVKSIIESSNLPIGTGTTRRLKDSS-DHTDNVMDINVNTEPNNVVSSHFTNGVGN 391
>08_01_0469 -
4127950-4127988,4127989-4128264,4128845-4130861,
4131134-4131987
Length = 1061
Score = 27.9 bits (59), Expect = 8.8
Identities = 10/35 (28%), Positives = 17/35 (48%)
Frame = +1
Query: 487 IVVSRQKERAEDAWKQYINELKCKHGYNSRADDFR 591
I+ S + + W + N + +HGYN D+ R
Sbjct: 382 IIASLLANKPREYWSEVYNSIGLEHGYNDDVDNTR 416
>03_02_0855 +
11809135-11809348,11809425-11809501,11809625-11809682,
11809753-11809840,11809910-11809979,11810171-11810728
Length = 354
Score = 27.9 bits (59), Expect = 8.8
Identities = 17/54 (31%), Positives = 24/54 (44%)
Frame = +1
Query: 43 ISVISYKMNNKTYYDEQFFLDKYNSNINNCKKRKHDHRIFEHNSNCKLIDLNTN 204
I +S+ M+ K E FLDK N +N +R F + +DLN N
Sbjct: 281 IGCMSFDMHVKERGSEDLFLDKLNRRPSNHPERCERRGGFSMSCQTANLDLNMN 334
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,014,180
Number of Sequences: 37544
Number of extensions: 327699
Number of successful extensions: 843
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 827
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 843
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1933531792
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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