Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte2a03
         (661 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC25B8.01 |dap1|SPAC26H5.15|cytochrome P450 regulator Dap1|Sch...    47   5e-12
SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase Rqh1|...    28   1.4  
SPBC776.08c |||Nrap|Schizosaccharomyces pombe|chr 2|||Manual           26   4.2  
SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces pombe...    26   5.5  
SPBC12C2.02c |ste20|ste16|sterility protein Ste20|Schizosaccharo...    25   7.3  

>SPAC25B8.01 |dap1|SPAC26H5.15|cytochrome P450 regulator
           Dap1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 166

 Score = 46.8 bits (106), Expect(2) = 5e-12
 Identities = 20/46 (43%), Positives = 28/46 (60%)
 Frame = +1

Query: 268 FTYDELARYNGIENAKLYLAVLGTIYDVTKGEKHYAKGATYHYFVG 405
           +T  EL  YNG +N+ ++LA+ GT+Y+VT G K Y     Y  F G
Sbjct: 43  YTPAELKEYNGSKNSLVFLAIKGTVYNVTMGSKFYGPQGPYSAFAG 88



 Score = 39.1 bits (87), Expect(2) = 5e-12
 Identities = 23/59 (38%), Positives = 28/59 (47%), Gaps = 6/59 (10%)
 Frame = +1

Query: 481 YSGKDGSRGLITGDFRDE------TKEKDHVLDLKCSDLSALLHWKQTFKQKYTEIGLL 639
           ++G D SRGL    F DE       +E D   DL   +  AL  WK  F QKY  +G L
Sbjct: 86  FAGHDASRGLAKNSFDDEFIPDSDAEELDDCSDLNDEERQALNDWKAFFDQKYQAVGRL 144


>SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase
           Rqh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1328

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +1

Query: 592 HWKQTFKQKYTEIGLLKGRY 651
           HW   F+  Y ++GLL+ RY
Sbjct: 658 HWGHDFRPDYKQLGLLRDRY 677


>SPBC776.08c |||Nrap|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1097

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 17/54 (31%), Positives = 29/54 (53%), Gaps = 4/54 (7%)
 Frame = +3

Query: 39  TMFFFILS*SANLERINSSQ*ECNGSLSNVSNET----LLKIYFSNSYSFRRRL 188
           T   F+L  +  LE +++ +   +  L N  N T     L++ FSN+++FR RL
Sbjct: 713 TKIAFLLKIAELLEALDNVE-RASVGLENTDNPTHNCCFLQVLFSNNFTFRYRL 765


>SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces
           pombe|chr mitochondrial|||Manual
          Length = 537

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 10/27 (37%), Positives = 18/27 (66%)
 Frame = -1

Query: 643 LSTNQFLYIFV*KFVSSAIVQTNHYIL 563
           LS   F+Y+   +F S+ +V+TN Y++
Sbjct: 469 LSLFLFMYVMYDQFTSNRVVKTNPYLI 495


>SPBC12C2.02c |ste20|ste16|sterility protein
           Ste20|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1309

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 12/32 (37%), Positives = 20/32 (62%), Gaps = 3/32 (9%)
 Frame = +1

Query: 490 KDGSRGLIT---GDFRDETKEKDHVLDLKCSD 576
           +DG+  L+     +F+ ETKE+  +L  KC+D
Sbjct: 54  RDGAETLLQVFDTNFKKETKERKEMLKKKCTD 85


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,538,836
Number of Sequences: 5004
Number of extensions: 48932
Number of successful extensions: 93
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 91
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 93
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 299817502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)