Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte2a03
(661 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0543 - 18649894-18650233,18651446-18651981 39 3e-08
02_05_0089 - 25715637-25716333,25716481-25717238 38 1e-06
03_02_0079 + 5485090-5485238,5486066-5486137,5486764-5486840,548... 47 1e-05
03_02_0826 + 11569961-11570301,11572220-11572454 39 1e-05
02_05_1047 + 33745656-33745964 39 0.004
10_08_0544 - 18655186-18655567,18656835-18657151 38 0.009
05_07_0337 - 29368823-29368863,29369011-29369104,29369231-293693... 34 0.12
01_05_0334 - 21068575-21068642,21068723-21068813,21068955-210690... 28 5.7
>10_08_0543 - 18649894-18650233,18651446-18651981
Length = 291
Score = 38.7 bits (86), Expect(2) = 3e-08
Identities = 19/54 (35%), Positives = 28/54 (51%)
Frame = +1
Query: 481 YSGKDGSRGLITGDFRDETKEKDHVLDLKCSDLSALLHWKQTFKQKYTEIGLLK 642
++GKD SR L F + D + L +LSAL W+ F KY ++G +K
Sbjct: 191 FAGKDASRALAKMSFEPQDLTDD-ISGLSLLELSALQDWEYKFSSKYVKVGTIK 243
Score = 36.7 bits (81), Expect(2) = 3e-08
Identities = 18/46 (39%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Frame = +1
Query: 271 TYDELARYNGIENAK-LYLAVLGTIYDVTKGEKHYAKGATYHYFVG 405
T +EL +Y+G + K L +A+ G IYDV++ Y G Y F G
Sbjct: 148 TAEELLQYDGSDPEKPLLMAIKGQIYDVSQSRLFYGPGGPYALFAG 193
>02_05_0089 - 25715637-25716333,25716481-25717238
Length = 484
Score = 37.9 bits (84), Expect(2) = 1e-06
Identities = 19/46 (41%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Frame = +1
Query: 271 TYDELARYNGIE-NAKLYLAVLGTIYDVTKGEKHYAKGATYHYFVG 405
T +EL Y+G + N L +A+ G IYDVT+ Y G Y F G
Sbjct: 222 TEEELRVYDGSDPNKPLLMAIKGQIYDVTQSRMFYGPGGPYALFAG 267
Score = 32.3 bits (70), Expect(2) = 1e-06
Identities = 18/54 (33%), Positives = 27/54 (50%)
Frame = +1
Query: 481 YSGKDGSRGLITGDFRDETKEKDHVLDLKCSDLSALLHWKQTFKQKYTEIGLLK 642
++G+D SR L F + D V L +L AL W+ F KY ++G +K
Sbjct: 265 FAGRDASRALAKMSFELDDLTGD-VSGLGPIELEALHEWEGKFMSKYVKVGTIK 317
>03_02_0079 +
5485090-5485238,5486066-5486137,5486764-5486840,
5486946-5486989,5487583-5487639,5487640-5487686,
5488010-5488184,5489501-5489662,5489845-5489883
Length = 273
Score = 47.2 bits (107), Expect = 1e-05
Identities = 27/112 (24%), Positives = 56/112 (50%), Gaps = 3/112 (2%)
Frame = +1
Query: 331 LGTIYDVTKGEKHYAKGATYHYFVGLY*AITHHAYNT*F-FVGNL*SEVENYSG-KDGSR 504
L +++DVTKG+ +Y G YH+F G + + +G+ + + G D +
Sbjct: 49 LSSVFDVTKGKSNYGPGGGYHHFAGSSWKLAKFQFLPEIDVIGSASTSFPSSDGLTDSLQ 108
Query: 505 GLITGDFRDETKEKDHVLDLKCS-DLSALLHWKQTFKQKYTEIGLLKGRYYD 657
GL + ++ K ++ S +++++ W++ + ++Y G + GRYYD
Sbjct: 109 GLSSMEYYACVFSKKGIIGFVTSFQVNSIVDWRKFYFERYIFAGKIVGRYYD 160
>03_02_0826 + 11569961-11570301,11572220-11572454
Length = 191
Score = 39.1 bits (87), Expect(2) = 1e-05
Identities = 18/46 (39%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Frame = +1
Query: 271 TYDELARYNGIENAK-LYLAVLGTIYDVTKGEKHYAKGATYHYFVG 405
T ++LA Y+G + AK + +A+ G +YDVT+G Y Y F G
Sbjct: 83 TLEQLAAYDGKDPAKPILIAIRGQVYDVTRGRLFYGPQGPYSLFAG 128
Score = 27.5 bits (58), Expect(2) = 1e-05
Identities = 15/53 (28%), Positives = 25/53 (47%)
Frame = +1
Query: 481 YSGKDGSRGLITGDFRDETKEKDHVLDLKCSDLSALLHWKQTFKQKYTEIGLL 639
++G+D +R L F D + L +L L W+ FK++Y +G L
Sbjct: 126 FAGRDATRALALMSF-DPIDLTGDLDGLGPDELEVLQDWEDKFKERYPTVGHL 177
>02_05_1047 + 33745656-33745964
Length = 102
Score = 38.7 bits (86), Expect = 0.004
Identities = 18/46 (39%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Frame = +1
Query: 271 TYDELARYNGIENAK-LYLAVLGTIYDVTKGEKHYAKGATYHYFVG 405
T +L Y+G + +K +Y++V G +YDVT G Y G Y F G
Sbjct: 6 TAAQLRAYDGSDPSKPIYVSVRGKVYDVTSGRGFYGPGGAYAVFAG 51
>10_08_0544 - 18655186-18655567,18656835-18657151
Length = 232
Score = 37.5 bits (83), Expect = 0.009
Identities = 18/44 (40%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Frame = +1
Query: 277 DELARYNGIENAK-LYLAVLGTIYDVTKGEKHYAKGATYHYFVG 405
+EL +Y+G + K L +A+ G IYDVT+ Y G Y F G
Sbjct: 77 EELRQYDGSDPKKPLLMAIKGQIYDVTQSRMFYGPGGPYALFAG 120
>05_07_0337 -
29368823-29368863,29369011-29369104,29369231-29369347,
29369751-29369804,29369910-29370026,29370170-29370310,
29370402-29370820,29370906-29370934,29371287-29371354,
29371833-29371907
Length = 384
Score = 33.9 bits (74), Expect = 0.12
Identities = 13/30 (43%), Positives = 20/30 (66%)
Frame = +1
Query: 292 YNGIENAKLYLAVLGTIYDVTKGEKHYAKG 381
+N +E L+LA+L T + + +GE HY KG
Sbjct: 320 FNLLETGSLFLAILVTAFTLQEGESHYLKG 349
>01_05_0334 -
21068575-21068642,21068723-21068813,21068955-21069071,
21069166-21069219,21069334-21070004,21070445-21070473,
21070576-21070643,21072382-21072621
Length = 445
Score = 28.3 bits (60), Expect = 5.7
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +1
Query: 301 IENAKLYLAVLGTIYDVTKGEKHYAKG 381
+E L++AVL T + + G HY KG
Sbjct: 376 LETGSLFMAVLVTAFTLQDGTSHYLKG 402
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,368,614
Number of Sequences: 37544
Number of extensions: 254885
Number of successful extensions: 485
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 473
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 484
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1655832080
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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