Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte2a03
         (661 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41552-5|AAP82646.1|  183|Caenorhabditis elegans Vema (mammalian...    44   7e-05
U41552-4|AAD31555.1|  198|Caenorhabditis elegans Vema (mammalian...    44   7e-05
AL024499-6|CAA19709.1|  326|Caenorhabditis elegans Hypothetical ...    44   7e-05
Z68749-7|CAA92962.2|  728|Caenorhabditis elegans Hypothetical pr...    28   6.8  
Z68749-6|CAC35818.1|  689|Caenorhabditis elegans Hypothetical pr...    28   6.8  
Z68219-9|CAA92483.2|  728|Caenorhabditis elegans Hypothetical pr...    28   6.8  
Z68219-7|CAC35827.1|  689|Caenorhabditis elegans Hypothetical pr...    28   6.8  
AY851363-1|AAW34127.1|  728|Caenorhabditis elegans fibulin-1D sp...    28   6.8  
AF070477-1|AAC24035.1|  589|Caenorhabditis elegans fibulin-1D pr...    28   6.8  
AF051403-1|AAC28324.1|  689|Caenorhabditis elegans fibulin-1 iso...    28   6.8  
AF051401-1|AAC28321.1|  689|Caenorhabditis elegans fibulin-1 iso...    28   6.8  

>U41552-5|AAP82646.1|  183|Caenorhabditis elegans Vema (mammalian
           ventral midlineantigen) related protein 1, isoform b
           protein.
          Length = 183

 Score = 44.4 bits (100), Expect = 7e-05
 Identities = 18/45 (40%), Positives = 27/45 (60%)
 Frame = +1

Query: 271 TYDELARYNGIENAKLYLAVLGTIYDVTKGEKHYAKGATYHYFVG 405
           T +EL +Y+G++N  +   + GTIYDVT+G+  Y  G  Y    G
Sbjct: 51  TVEELRKYDGVKNEHILFGLNGTIYDVTRGKGFYGPGKAYGTLAG 95


>U41552-4|AAD31555.1|  198|Caenorhabditis elegans Vema (mammalian
           ventral midlineantigen) related protein 1, isoform a
           protein.
          Length = 198

 Score = 44.4 bits (100), Expect = 7e-05
 Identities = 18/45 (40%), Positives = 27/45 (60%)
 Frame = +1

Query: 271 TYDELARYNGIENAKLYLAVLGTIYDVTKGEKHYAKGATYHYFVG 405
           T +EL +Y+G++N  +   + GTIYDVT+G+  Y  G  Y    G
Sbjct: 66  TVEELRKYDGVKNEHILFGLNGTIYDVTRGKGFYGPGKAYGTLAG 110


>AL024499-6|CAA19709.1|  326|Caenorhabditis elegans Hypothetical
           protein H38K22.3 protein.
          Length = 326

 Score = 44.4 bits (100), Expect = 7e-05
 Identities = 18/47 (38%), Positives = 33/47 (70%), Gaps = 1/47 (2%)
 Frame = +1

Query: 268 FTYDELARYNGIENAK-LYLAVLGTIYDVTKGEKHYAKGATYHYFVG 405
           FT ++L  ++G  ++K +YLA+LG +Y+V   +++Y  G +YH+F G
Sbjct: 101 FTPEQLHFFDGTRDSKPIYLAILGRVYNVDGKKEYYGPGKSYHHFAG 147


>Z68749-7|CAA92962.2|  728|Caenorhabditis elegans Hypothetical
           protein F56H11.1c protein.
          Length = 728

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 15/43 (34%), Positives = 23/43 (53%)
 Frame = -3

Query: 620 YFCLKVCFQCNSADKSLHFRSRTWSFSLVSSLKSPVIKPLDPS 492
           Y C+KVC   ++     H R   + F  V SLK+ +I P++ S
Sbjct: 608 YSCIKVCSTEDTECLGNHTREVLYQFRAVPSLKT-IISPIEVS 649


>Z68749-6|CAC35818.1|  689|Caenorhabditis elegans Hypothetical
           protein F56H11.1b protein.
          Length = 689

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 15/43 (34%), Positives = 23/43 (53%)
 Frame = -3

Query: 620 YFCLKVCFQCNSADKSLHFRSRTWSFSLVSSLKSPVIKPLDPS 492
           Y C+KVC   ++     H R   + F  V SLK+ +I P++ S
Sbjct: 569 YSCIKVCSTEDTECLGNHTREVLYQFRAVPSLKT-IISPIEVS 610


>Z68219-9|CAA92483.2|  728|Caenorhabditis elegans Hypothetical
           protein F56H11.1c protein.
          Length = 728

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 15/43 (34%), Positives = 23/43 (53%)
 Frame = -3

Query: 620 YFCLKVCFQCNSADKSLHFRSRTWSFSLVSSLKSPVIKPLDPS 492
           Y C+KVC   ++     H R   + F  V SLK+ +I P++ S
Sbjct: 608 YSCIKVCSTEDTECLGNHTREVLYQFRAVPSLKT-IISPIEVS 649


>Z68219-7|CAC35827.1|  689|Caenorhabditis elegans Hypothetical
           protein F56H11.1b protein.
          Length = 689

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 15/43 (34%), Positives = 23/43 (53%)
 Frame = -3

Query: 620 YFCLKVCFQCNSADKSLHFRSRTWSFSLVSSLKSPVIKPLDPS 492
           Y C+KVC   ++     H R   + F  V SLK+ +I P++ S
Sbjct: 569 YSCIKVCSTEDTECLGNHTREVLYQFRAVPSLKT-IISPIEVS 610


>AY851363-1|AAW34127.1|  728|Caenorhabditis elegans fibulin-1D
           splice variant protein.
          Length = 728

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 15/43 (34%), Positives = 23/43 (53%)
 Frame = -3

Query: 620 YFCLKVCFQCNSADKSLHFRSRTWSFSLVSSLKSPVIKPLDPS 492
           Y C+KVC   ++     H R   + F  V SLK+ +I P++ S
Sbjct: 608 YSCIKVCSTEDTECLGNHTREVLYQFRAVPSLKT-IISPIEVS 649


>AF070477-1|AAC24035.1|  589|Caenorhabditis elegans fibulin-1D
           precursor protein.
          Length = 589

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 15/43 (34%), Positives = 23/43 (53%)
 Frame = -3

Query: 620 YFCLKVCFQCNSADKSLHFRSRTWSFSLVSSLKSPVIKPLDPS 492
           Y C+KVC   ++     H R   + F  V SLK+ +I P++ S
Sbjct: 469 YSCIKVCSTEDTECLGNHTREVLYQFRAVPSLKT-IISPIEVS 510


>AF051403-1|AAC28324.1|  689|Caenorhabditis elegans fibulin-1
           isoform D precursor protein.
          Length = 689

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 15/43 (34%), Positives = 23/43 (53%)
 Frame = -3

Query: 620 YFCLKVCFQCNSADKSLHFRSRTWSFSLVSSLKSPVIKPLDPS 492
           Y C+KVC   ++     H R   + F  V SLK+ +I P++ S
Sbjct: 569 YSCIKVCSTEDTECLGNHTREVLYQFRAVPSLKT-IISPIEVS 610


>AF051401-1|AAC28321.1|  689|Caenorhabditis elegans fibulin-1
           isoform D precursor protein.
          Length = 689

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 15/43 (34%), Positives = 23/43 (53%)
 Frame = -3

Query: 620 YFCLKVCFQCNSADKSLHFRSRTWSFSLVSSLKSPVIKPLDPS 492
           Y C+KVC   ++     H R   + F  V SLK+ +I P++ S
Sbjct: 569 YSCIKVCSTEDTECLGNHTREVLYQFRAVPSLKT-IISPIEVS 610


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,884,765
Number of Sequences: 27780
Number of extensions: 269736
Number of successful extensions: 606
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 596
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 606
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1476380920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)